Wall clock time and date at job start Tue Mar 31 2020 05:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86794 * 120.00189 * 2 1 4 4 H 1.48494 * 109.47161 * 240.00091 * 3 2 1 5 5 H 1.48507 * 109.47132 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47187 * 119.99938 * 3 2 1 7 7 C 1.40032 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00201 * 180.02562 * 7 2 1 9 9 C 1.41429 * 119.99853 * 0.27244 * 7 2 1 10 10 C 1.40482 * 119.77662 * 179.45244 * 9 7 2 11 11 C 1.39306 * 118.83856 * 179.77652 * 10 9 7 12 12 C 1.48393 * 120.82412 * 180.24012 * 11 10 9 13 13 C 1.39375 * 120.09054 * 359.97438 * 12 11 10 14 14 C 1.38035 * 119.98554 * 179.71754 * 13 12 11 15 15 C 1.38247 * 120.17727 * 0.58511 * 14 13 12 16 16 C 1.38794 * 120.18988 * 359.66615 * 15 14 13 17 17 O 1.35909 * 119.99282 * 180.02562 * 16 15 14 18 18 C 1.42901 * 117.00234 * 354.50019 * 17 16 15 19 19 C 1.52998 * 117.49792 * 224.92466 * 18 17 16 20 20 C 1.53002 * 117.49805 * 156.26803 * 18 17 16 21 21 C 1.38539 * 120.00852 * 0.05302 * 16 15 14 22 22 C 1.40037 * 118.35173 * 0.49173 * 11 10 9 23 23 C 1.38507 * 119.42685 * 359.74597 * 22 11 10 24 24 N 1.31479 * 121.14248 * 0.02562 * 23 22 11 25 25 H 0.96996 * 119.99972 * 0.02562 * 1 2 3 26 26 H 1.08004 * 120.58094 * 0.02562 * 10 9 7 27 27 H 1.08002 * 120.01178 * 0.02562 * 13 12 11 28 28 H 1.07995 * 119.90779 * 180.25499 * 14 13 12 29 29 H 1.08000 * 119.90612 * 179.69850 * 15 14 13 30 30 H 1.09004 * 115.55032 * 10.60069 * 18 17 16 31 31 H 1.08998 * 117.50263 * 0.02562 * 19 18 17 32 32 H 1.09009 * 117.49373 * 145.02136 * 19 18 17 33 33 H 1.08998 * 117.49809 * 214.97943 * 20 18 17 34 34 H 1.08997 * 117.49624 * 359.97438 * 20 18 17 35 35 H 1.08000 * 120.08798 * 179.97438 * 21 16 15 36 36 H 1.08005 * 120.28675 * 179.73294 * 22 11 10 37 37 H 1.08000 * 119.42691 * 180.02562 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0951 1.6963 -1.2125 5 1 1.2764 2.7465 -0.0006 6 1 3.0952 1.6963 1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0876 -1.2128 -0.0001 9 6 1.3004 -2.4375 -0.0069 10 6 2.0074 -3.6513 -0.0191 11 6 1.2912 -4.8462 -0.0204 12 6 1.9933 -6.1535 -0.0277 13 6 3.3863 -6.1986 -0.0339 14 6 4.0372 -7.4158 -0.0348 15 6 3.3110 -8.5922 -0.0418 16 6 1.9235 -8.5559 -0.0410 17 8 1.2135 -9.7148 -0.0474 18 6 1.9553 -10.9293 -0.1768 19 6 1.4256 -11.9797 -1.1551 20 6 1.3098 -12.2112 0.3536 21 6 1.2622 -7.3385 -0.0342 22 6 -0.1077 -4.7830 -0.0201 23 6 -0.7331 -3.5471 -0.0131 24 7 -0.0360 -2.4324 -0.0073 25 1 -0.4850 0.8400 -0.0004 26 1 3.0875 -3.6581 -0.0232 27 1 3.9565 -5.2813 -0.0330 28 1 5.1166 -7.4493 -0.0355 29 1 3.8247 -9.5421 -0.0474 30 1 3.0366 -10.8326 -0.0788 31 1 0.5117 -11.7442 -1.7003 32 1 2.1586 -12.5742 -1.7006 33 1 1.9665 -12.9578 0.8000 34 1 0.3196 -12.1279 0.8015 35 1 0.1827 -7.3087 -0.0340 36 1 -0.6939 -5.6901 -0.0255 37 1 -1.8120 -3.4984 -0.0125 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242806727.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:39 Heat of formation + Delta-G solvation = 39.193288 kcal Electronic energy + Delta-G solvation = -20087.703813 eV Core-core repulsion = 16988.637888 eV Total energy + Delta-G solvation = -3099.065925 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.27173 -40.15106 -38.71674 -36.26806 -35.53434 -33.74410 -32.11972 -31.06249 -29.96945 -27.64955 -25.30368 -24.12697 -23.38316 -23.33901 -22.43873 -21.40766 -19.78947 -18.63009 -17.57431 -17.36532 -16.89344 -16.24969 -16.08438 -15.94893 -15.68351 -15.34629 -14.86429 -14.76007 -14.34866 -14.30763 -13.97091 -13.39109 -13.29221 -12.92467 -12.87477 -12.80932 -12.47357 -12.45862 -12.17681 -11.82836 -11.62599 -11.34152 -11.32775 -11.05539 -10.68157 -9.62982 -9.53827 -9.38221 -8.97624 -8.30648 -6.54028 -0.09720 0.45806 0.87692 1.37036 1.40833 1.53795 1.57365 2.03523 2.22978 2.70373 2.84702 3.01402 3.57941 3.83612 3.84681 3.93697 3.96286 4.00907 4.11104 4.24267 4.27908 4.33141 4.57813 4.62136 4.69998 4.72175 4.86102 4.93648 4.96855 5.06211 5.18420 5.19104 5.28777 5.38183 5.46162 5.50828 5.59784 5.77666 5.94882 6.11991 6.26015 6.47474 6.71046 6.92507 8.15614 8.44571 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.040076 B = 0.003210 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.498979 B = 8721.837777 C = 9337.142775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.022 3.978 3 Si 0.990 3.010 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.257 1.257 7 C -0.467 4.467 8 H 0.092 0.908 9 C 0.222 3.778 10 C -0.267 4.267 11 C -0.003 4.003 12 C -0.009 4.009 13 C -0.159 4.159 14 C -0.071 4.071 15 C -0.207 4.207 16 C 0.124 3.876 17 O -0.305 6.305 18 C -0.028 4.028 19 C -0.180 4.180 20 C -0.163 4.163 21 C -0.160 4.160 22 C -0.301 4.301 23 C 0.106 3.894 24 N -0.520 5.520 25 H 0.279 0.721 26 H 0.117 0.883 27 H 0.127 0.873 28 H 0.162 0.838 29 H 0.163 0.837 30 H 0.145 0.855 31 H 0.092 0.908 32 H 0.128 0.872 33 H 0.132 0.868 34 H 0.094 0.906 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.200 -18.548 -0.479 19.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.380 5.380 2 C -0.200 4.200 3 Si 0.809 3.191 4 H -0.181 1.181 5 H -0.193 1.193 6 H -0.181 1.181 7 C -0.499 4.499 8 H 0.110 0.890 9 C 0.097 3.903 10 C -0.289 4.289 11 C -0.009 4.009 12 C -0.010 4.010 13 C -0.177 4.177 14 C -0.089 4.089 15 C -0.225 4.225 16 C 0.079 3.921 17 O -0.219 6.219 18 C -0.083 4.083 19 C -0.217 4.217 20 C -0.200 4.200 21 C -0.179 4.179 22 C -0.324 4.324 23 C -0.058 4.058 24 N -0.234 5.234 25 H 0.090 0.910 26 H 0.135 0.865 27 H 0.145 0.855 28 H 0.179 0.821 29 H 0.181 0.819 30 H 0.162 0.838 31 H 0.110 0.890 32 H 0.146 0.854 33 H 0.150 0.850 34 H 0.113 0.887 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.372 -17.626 -0.460 18.748 hybrid contribution 0.219 0.107 -0.011 0.244 sum 6.591 -17.520 -0.471 18.724 Atomic orbital electron populations 1.70232 1.09007 1.29250 1.29477 1.27050 0.95756 1.04716 0.92442 0.85158 0.78571 0.75158 0.80181 1.18147 1.19323 1.18120 1.19988 0.94885 0.90279 1.44716 0.88980 1.19023 0.88815 0.93184 0.89284 1.22009 0.99396 0.92425 1.15084 1.18929 0.93414 0.91758 0.96837 1.18717 0.93762 0.90965 0.97509 1.21403 0.93019 0.99552 1.03749 1.21211 1.01332 0.90407 0.95950 1.21546 0.92001 1.00758 1.08202 1.18845 0.91219 0.85228 0.96798 1.85987 1.35863 1.12648 1.87368 1.23496 0.96895 0.79793 1.08136 1.23567 1.04251 1.00564 0.93288 1.23483 1.03384 0.96422 0.96729 1.20466 1.00415 0.89516 1.07516 1.21672 0.94068 0.98373 1.18271 1.22886 0.99889 0.88800 0.94196 1.68660 1.07923 1.28434 1.18353 0.90995 0.86482 0.85476 0.82061 0.81949 0.83827 0.88966 0.85355 0.84982 0.88705 0.85820 0.86021 0.84284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -41.94 11.46 21.84 0.25 -41.69 16 2 C 0.02 1.14 5.50 85.29 0.47 1.60 16 3 Si 0.99 38.49 29.56 68.60 2.03 40.52 16 4 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 5 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 6 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 7 C -0.47 -25.84 9.14 23.49 0.21 -25.63 16 8 H 0.09 4.68 7.85 -2.91 -0.02 4.66 16 9 C 0.22 12.70 6.55 40.20 0.26 12.96 16 10 C -0.27 -13.54 9.22 23.07 0.21 -13.32 16 11 C 0.00 -0.15 5.91 -19.88 -0.12 -0.27 16 12 C -0.01 -0.37 5.87 -20.06 -0.12 -0.48 16 13 C -0.16 -5.25 9.44 22.50 0.21 -5.04 16 14 C -0.07 -1.78 10.03 22.22 0.22 -1.56 16 15 C -0.21 -4.96 9.18 22.41 0.21 -4.75 16 16 C 0.12 3.70 6.67 22.47 0.15 3.85 16 17 O -0.30 -8.39 10.39 -92.52 -0.96 -9.36 16 18 C -0.03 -0.50 6.20 30.59 0.19 -0.31 16 19 C -0.18 -2.55 10.48 30.62 0.32 -2.23 16 20 C -0.16 -2.23 10.48 30.62 0.32 -1.91 16 21 C -0.16 -5.71 9.39 22.58 0.21 -5.50 16 22 C -0.30 -14.08 9.51 22.77 0.22 -13.86 16 23 C 0.11 5.39 11.17 84.81 0.95 6.34 16 24 N -0.52 -30.25 7.85 -189.36 -1.49 -31.74 16 25 H 0.28 13.96 8.29 -92.71 -0.77 13.20 16 26 H 0.12 5.40 6.33 -2.91 -0.02 5.38 16 27 H 0.13 4.15 6.29 -2.91 -0.02 4.13 16 28 H 0.16 2.76 8.06 -2.91 -0.02 2.73 16 29 H 0.16 2.59 5.50 -2.91 -0.02 2.58 16 30 H 0.14 1.94 5.32 -2.39 -0.01 1.93 16 31 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.13 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.12 4.45 6.28 -2.91 -0.02 4.43 16 36 H 0.12 4.98 6.32 -2.91 -0.02 4.96 16 37 H 0.14 6.24 8.06 -2.91 -0.02 6.22 16 Total: -1.00 -68.89 316.19 4.86 -64.03 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: 1.10 Total: 28.34 kcal Atomic # 6 Polarization: -54.02 SS G_CDS: 3.92 Total: -50.10 kcal Atomic # 7 Polarization: -72.19 SS G_CDS: -1.24 Total: -73.43 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -0.96 Total: -9.36 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.52 kcal Total: -68.89 4.86 -64.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242806727.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.225 kcal (2) G-P(sol) polarization free energy of solvation -68.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds