Wall clock time and date at job start Tue Mar 31 2020 05:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30690 * 1 3 3 Si 1.86795 * 120.00407 * 2 1 4 4 H 1.48502 * 109.46999 * 270.00097 * 3 2 1 5 5 H 1.48508 * 109.47107 * 29.99566 * 3 2 1 6 6 H 1.48492 * 109.47320 * 149.99576 * 3 2 1 7 7 C 1.40159 * 119.99527 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99455 * 179.97438 * 7 2 1 9 9 C 1.40812 * 120.00347 * 0.02562 * 7 2 1 10 10 N 1.33703 * 119.93682 * 359.97438 * 9 7 2 11 11 C 1.31284 * 121.63721 * 180.02562 * 10 9 7 12 12 C 1.39058 * 121.33609 * 0.02562 * 11 10 9 13 13 C 1.38402 * 119.72578 * 359.97438 * 12 11 10 14 14 C 1.39670 * 118.46993 * 0.25169 * 13 12 11 15 15 C 1.47833 * 120.64289 * 179.72260 * 14 13 12 16 16 C 1.39740 * 120.12269 * 130.00121 * 15 14 13 17 17 C 1.37917 * 119.95410 * 179.97438 * 16 15 14 18 18 C 1.38336 * 120.21575 * 359.97438 * 17 16 15 19 19 C 1.38882 * 120.24836 * 0.02562 * 18 17 16 20 20 O 1.35906 * 119.98193 * 179.97438 * 19 18 17 21 21 C 1.42893 * 117.00045 * 174.55492 * 20 19 18 22 22 C 1.53007 * 117.49658 * 225.08329 * 21 20 19 23 23 C 1.53004 * 117.49788 * 156.42607 * 21 20 19 24 24 C 1.38437 * 120.03813 * 359.74400 * 19 18 17 25 25 H 0.97003 * 119.99955 * 0.02562 * 1 2 3 26 26 H 1.07996 * 119.33309 * 180.02562 * 11 10 9 27 27 H 1.07996 * 120.13672 * 179.97438 * 12 11 10 28 28 H 1.08001 * 120.76140 * 179.97438 * 13 12 11 29 29 H 1.08002 * 120.02132 * 359.95710 * 16 15 14 30 30 H 1.08005 * 119.89460 * 180.02562 * 17 16 15 31 31 H 1.07995 * 119.87683 * 180.02562 * 18 17 16 32 32 H 1.08995 * 115.55352 * 10.75081 * 21 20 19 33 33 H 1.09000 * 117.49589 * 0.02562 * 22 21 20 34 34 H 1.08996 * 117.49503 * 145.01904 * 22 21 20 35 35 H 1.08994 * 117.50186 * 214.97613 * 23 21 20 36 36 H 1.08999 * 117.49586 * 359.97438 * 23 21 20 37 37 H 1.08007 * 120.10399 * 180.27514 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6176 0.0000 4 1 2.4885 2.0463 -1.4001 5 1 1.4384 2.6527 0.7000 6 1 3.5384 1.4401 0.7001 7 6 2.0076 -1.2139 0.0005 8 1 3.0876 -1.2139 0.0001 9 6 1.3035 -2.4333 0.0005 10 7 -0.0335 -2.4318 0.0005 11 6 -0.7234 -3.5488 0.0010 12 6 -0.0929 -4.7882 0.0021 13 6 1.2895 -4.8549 0.0022 14 6 2.0137 -3.6607 0.0065 15 6 3.4920 -3.6759 0.0129 16 6 4.2052 -2.9053 -0.9092 17 6 5.5843 -2.9218 -0.8998 18 6 6.2650 -3.6987 0.0204 19 6 5.5648 -4.4679 0.9407 20 8 6.2391 -5.2296 1.8420 21 6 5.4611 -5.9013 2.8346 22 6 5.9596 -5.8454 4.2801 23 6 6.0669 -7.1478 3.4829 24 6 4.1805 -4.4555 0.9436 25 1 -0.4850 0.8401 -0.0004 26 1 -1.8025 -3.5042 0.0006 27 1 -0.6795 -5.6950 0.0029 28 1 1.7965 -5.8086 0.0034 29 1 3.6769 -2.2976 -1.6288 30 1 6.1346 -2.3255 -1.6126 31 1 7.3449 -3.7071 0.0232 32 1 4.3831 -5.8913 2.6733 33 1 6.8808 -5.2959 4.4738 34 1 5.2096 -5.7990 5.0696 35 1 5.3875 -7.9577 3.7484 36 1 7.0587 -7.4556 3.1519 37 1 3.6350 -5.0499 1.6618 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242806780.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:36 Heat of formation + Delta-G solvation = 53.667940 kcal Electronic energy + Delta-G solvation = -20911.694360 eV Core-core repulsion = 17813.256103 eV Total energy + Delta-G solvation = -3098.438257 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.83494 -38.44205 -37.18233 -35.07305 -33.76556 -32.00309 -30.40544 -29.48591 -28.24906 -25.81427 -23.73145 -22.54955 -22.47906 -21.58668 -20.49589 -20.29713 -17.91079 -17.56880 -15.89165 -15.61620 -15.35921 -15.05161 -14.58219 -14.45823 -14.24563 -13.90597 -13.71387 -13.19620 -12.68610 -12.37985 -12.10739 -11.91149 -11.70231 -11.63491 -11.27458 -11.21918 -11.13776 -10.99463 -10.65978 -10.42567 -10.26821 -10.00987 -9.69821 -9.48258 -8.66729 -8.13935 -7.74266 -7.67946 -7.28323 -6.53138 -4.61539 1.79348 2.01304 2.69734 2.96806 3.03555 3.07420 3.16090 3.24146 3.73770 3.86585 4.42783 4.64956 4.68146 4.84614 5.03146 5.23502 5.45606 5.49654 5.55198 5.75061 5.75527 5.80799 5.98263 6.01800 6.02569 6.10320 6.13554 6.23029 6.46160 6.62937 6.75909 6.84088 6.99133 7.06550 7.19842 7.27604 7.34050 7.53314 7.68030 7.86905 7.94624 8.15931 8.52513 8.81763 9.98274 10.17278 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015304 B = 0.005646 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.139941 B = 4958.396256 C = 5891.337738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.706 5.706 2 C 0.068 3.932 3 Si 0.904 3.096 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.418 4.418 8 H 0.096 0.904 9 C 0.268 3.732 10 N -0.482 5.482 11 C 0.134 3.866 12 C -0.323 4.323 13 C -0.031 4.031 14 C -0.243 4.243 15 C 0.066 3.934 16 C -0.143 4.143 17 C -0.086 4.086 18 C -0.179 4.179 19 C 0.123 3.877 20 O -0.290 6.290 21 C 0.006 3.994 22 C -0.186 4.186 23 C -0.175 4.175 24 C -0.216 4.216 25 H 0.275 0.725 26 H 0.119 0.881 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.130 0.870 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.127 0.873 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.003 -6.253 3.049 10.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.327 5.327 2 C -0.159 4.159 3 Si 0.728 3.272 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.448 4.448 8 H 0.114 0.886 9 C 0.145 3.855 10 N -0.193 5.193 11 C -0.035 4.035 12 C -0.346 4.346 13 C -0.055 4.055 14 C -0.247 4.247 15 C 0.065 3.935 16 C -0.162 4.162 17 C -0.104 4.104 18 C -0.198 4.198 19 C 0.079 3.921 20 O -0.204 6.204 21 C -0.051 4.051 22 C -0.224 4.224 23 C -0.212 4.212 24 C -0.234 4.234 25 H 0.086 0.914 26 H 0.137 0.863 27 H 0.113 0.887 28 H 0.114 0.886 29 H 0.148 0.852 30 H 0.139 0.861 31 H 0.136 0.864 32 H 0.145 0.855 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.624 -5.279 3.067 9.767 hybrid contribution 0.496 -0.229 0.135 0.563 sum 8.120 -5.508 3.202 10.321 Atomic orbital electron populations 1.70114 1.07345 1.28155 1.27039 1.26174 0.94895 1.01347 0.93513 0.86354 0.80739 0.80603 0.79533 1.19101 1.19959 1.18192 1.19898 0.95163 0.89201 1.40504 0.88569 1.18508 0.87944 0.90922 0.88084 1.68782 1.07038 1.26566 1.16928 1.22623 0.98847 0.88862 0.93158 1.21220 0.94530 0.97893 1.20922 1.20878 0.93780 0.95647 0.95240 1.19350 0.90652 0.94569 1.20167 1.18520 0.92665 0.91271 0.91009 1.21371 0.93243 1.01153 1.00402 1.20794 0.94305 0.97717 0.97592 1.20190 0.99263 1.01578 0.98731 1.18786 0.90648 0.92360 0.90348 1.85938 1.34827 1.59945 1.39718 1.23018 0.95981 0.98401 0.87664 1.23438 1.04109 1.00515 0.94305 1.23331 1.03340 0.91700 1.02816 1.21299 0.92346 1.06364 1.03422 0.91359 0.86323 0.88661 0.88632 0.85237 0.86088 0.86423 0.85543 0.88059 0.87884 0.87785 0.88084 0.85993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.22 11.46 55.56 0.64 -17.58 16 2 C 0.07 1.67 5.50 -17.32 -0.10 1.57 16 3 Si 0.90 18.18 29.56 -169.99 -5.02 13.15 16 4 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 6 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.42 -10.76 7.96 -37.89 -0.30 -11.06 16 8 H 0.10 2.36 5.21 -52.48 -0.27 2.09 16 9 C 0.27 7.10 6.56 -84.72 -0.56 6.55 16 10 N -0.48 -12.95 7.85 -10.91 -0.09 -13.04 16 11 C 0.13 3.17 11.17 -17.48 -0.20 2.97 16 12 C -0.32 -7.05 10.10 -39.22 -0.40 -7.45 16 13 C -0.03 -0.69 9.67 -38.99 -0.38 -1.07 16 14 C -0.24 -5.78 5.53 -104.07 -0.58 -6.35 16 15 C 0.07 1.42 5.03 -104.91 -0.53 0.89 16 16 C -0.14 -2.86 7.55 -39.14 -0.30 -3.16 16 17 C -0.09 -1.47 10.02 -39.66 -0.40 -1.87 16 18 C -0.18 -3.04 9.98 -39.31 -0.39 -3.43 16 19 C 0.12 2.21 6.67 -39.27 -0.26 1.95 16 20 O -0.29 -4.82 10.39 -19.44 -0.20 -5.02 16 21 C 0.01 0.08 6.20 -26.73 -0.17 -0.08 16 22 C -0.19 -2.10 10.48 -26.69 -0.28 -2.38 16 23 C -0.17 -1.86 10.48 -26.69 -0.28 -2.14 16 24 C -0.22 -4.16 8.69 -39.01 -0.34 -4.50 16 25 H 0.28 6.41 8.29 -40.82 -0.34 6.08 16 26 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 27 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 28 H 0.10 1.87 8.06 -52.49 -0.42 1.44 16 29 H 0.13 2.65 7.21 -52.49 -0.38 2.27 16 30 H 0.12 1.70 8.06 -52.48 -0.42 1.27 16 31 H 0.12 1.74 8.06 -52.49 -0.42 1.31 16 32 H 0.13 1.75 5.33 -51.93 -0.28 1.48 16 33 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.12 2.21 5.50 -52.48 -0.29 1.92 16 LS Contribution 316.59 15.07 4.77 4.77 Total: -1.00 -28.69 316.59 -9.50 -38.19 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -4.16 Total: 9.08 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: -5.44 Total: -29.56 kcal Atomic # 7 Polarization: -31.17 SS G_CDS: 0.55 Total: -30.62 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -0.20 Total: -5.02 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.02 Total: 13.15 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.69 -9.50 -38.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242806780.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.857 kcal (2) G-P(sol) polarization free energy of solvation -28.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds