Wall clock time and date at job start Tue Mar 31 2020 05:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30690 * 1 3 3 Si 1.86795 * 120.00407 * 2 1 4 4 H 1.48502 * 109.46999 * 270.00097 * 3 2 1 5 5 H 1.48508 * 109.47107 * 29.99566 * 3 2 1 6 6 H 1.48492 * 109.47320 * 149.99576 * 3 2 1 7 7 C 1.40159 * 119.99527 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99455 * 179.97438 * 7 2 1 9 9 C 1.40812 * 120.00347 * 0.02562 * 7 2 1 10 10 N 1.33703 * 119.93682 * 359.97438 * 9 7 2 11 11 C 1.31284 * 121.63721 * 180.02562 * 10 9 7 12 12 C 1.39058 * 121.33609 * 0.02562 * 11 10 9 13 13 C 1.38402 * 119.72578 * 359.97438 * 12 11 10 14 14 C 1.39670 * 118.46993 * 0.25169 * 13 12 11 15 15 C 1.47833 * 120.64289 * 179.72260 * 14 13 12 16 16 C 1.39740 * 120.12269 * 130.00121 * 15 14 13 17 17 C 1.37917 * 119.95410 * 179.97438 * 16 15 14 18 18 C 1.38336 * 120.21575 * 359.97438 * 17 16 15 19 19 C 1.38882 * 120.24836 * 0.02562 * 18 17 16 20 20 O 1.35906 * 119.98193 * 179.97438 * 19 18 17 21 21 C 1.42893 * 117.00045 * 174.55492 * 20 19 18 22 22 C 1.53007 * 117.49658 * 225.08329 * 21 20 19 23 23 C 1.53004 * 117.49788 * 156.42607 * 21 20 19 24 24 C 1.38437 * 120.03813 * 359.74400 * 19 18 17 25 25 H 0.97003 * 119.99955 * 0.02562 * 1 2 3 26 26 H 1.07996 * 119.33309 * 180.02562 * 11 10 9 27 27 H 1.07996 * 120.13672 * 179.97438 * 12 11 10 28 28 H 1.08001 * 120.76140 * 179.97438 * 13 12 11 29 29 H 1.08002 * 120.02132 * 359.95710 * 16 15 14 30 30 H 1.08005 * 119.89460 * 180.02562 * 17 16 15 31 31 H 1.07995 * 119.87683 * 180.02562 * 18 17 16 32 32 H 1.08995 * 115.55352 * 10.75081 * 21 20 19 33 33 H 1.09000 * 117.49589 * 0.02562 * 22 21 20 34 34 H 1.08996 * 117.49503 * 145.01904 * 22 21 20 35 35 H 1.08994 * 117.50186 * 214.97613 * 23 21 20 36 36 H 1.08999 * 117.49586 * 359.97438 * 23 21 20 37 37 H 1.08007 * 120.10399 * 180.27514 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6176 0.0000 4 1 2.4885 2.0463 -1.4001 5 1 1.4384 2.6527 0.7000 6 1 3.5384 1.4401 0.7001 7 6 2.0076 -1.2139 0.0005 8 1 3.0876 -1.2139 0.0001 9 6 1.3035 -2.4333 0.0005 10 7 -0.0335 -2.4318 0.0005 11 6 -0.7234 -3.5488 0.0010 12 6 -0.0929 -4.7882 0.0021 13 6 1.2895 -4.8549 0.0022 14 6 2.0137 -3.6607 0.0065 15 6 3.4920 -3.6759 0.0129 16 6 4.2052 -2.9053 -0.9092 17 6 5.5843 -2.9218 -0.8998 18 6 6.2650 -3.6987 0.0204 19 6 5.5648 -4.4679 0.9407 20 8 6.2391 -5.2296 1.8420 21 6 5.4611 -5.9013 2.8346 22 6 5.9596 -5.8454 4.2801 23 6 6.0669 -7.1478 3.4829 24 6 4.1805 -4.4555 0.9436 25 1 -0.4850 0.8401 -0.0004 26 1 -1.8025 -3.5042 0.0006 27 1 -0.6795 -5.6950 0.0029 28 1 1.7965 -5.8086 0.0034 29 1 3.6769 -2.2976 -1.6288 30 1 6.1346 -2.3255 -1.6126 31 1 7.3449 -3.7071 0.0232 32 1 4.3831 -5.8913 2.6733 33 1 6.8808 -5.2959 4.4738 34 1 5.2096 -5.7990 5.0696 35 1 5.3875 -7.9577 3.7484 36 1 7.0587 -7.4556 3.1519 37 1 3.6350 -5.0499 1.6618 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242806780.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:35 Heat of formation + Delta-G solvation = 39.743471 kcal Electronic energy + Delta-G solvation = -20912.298170 eV Core-core repulsion = 17813.256103 eV Total energy + Delta-G solvation = -3099.042067 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.17710 -40.08430 -38.55745 -36.19330 -35.58021 -33.61923 -32.21014 -30.96736 -29.82920 -27.63630 -25.09974 -24.00686 -23.37377 -23.34009 -21.99692 -21.65197 -19.45295 -19.18371 -17.49013 -17.07517 -16.75657 -16.32681 -16.12127 -16.01170 -15.77350 -15.31412 -14.95130 -14.61796 -14.31977 -14.05943 -13.73150 -13.32149 -13.17511 -12.91107 -12.84687 -12.77535 -12.51525 -12.46327 -12.10211 -11.92139 -11.60944 -11.33957 -11.25542 -10.93733 -10.32460 -9.86366 -9.53176 -9.30886 -8.84801 -8.33883 -6.49671 0.25578 0.57588 0.95385 1.23300 1.38618 1.50416 1.53925 2.09833 2.19910 2.76067 2.81977 3.01374 3.64749 3.87178 3.93118 3.96739 4.03294 4.13897 4.26822 4.30368 4.40423 4.46731 4.54679 4.69163 4.74358 4.77799 4.88984 4.93880 4.98999 5.12461 5.16554 5.20065 5.37676 5.48385 5.59031 5.63305 5.78306 5.95626 5.99393 6.15789 6.29477 6.53095 6.69078 6.95542 8.14475 8.39149 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015304 B = 0.005646 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.139941 B = 4958.396256 C = 5891.337738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.748 5.748 2 C 0.025 3.975 3 Si 0.977 3.023 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.448 4.448 8 H 0.099 0.901 9 C 0.237 3.763 10 N -0.520 5.520 11 C 0.111 3.889 12 C -0.313 4.313 13 C -0.042 4.042 14 C -0.248 4.248 15 C 0.038 3.962 16 C -0.160 4.160 17 C -0.076 4.076 18 C -0.174 4.174 19 C 0.122 3.878 20 O -0.296 6.296 21 C -0.034 4.034 22 C -0.179 4.179 23 C -0.152 4.152 24 C -0.221 4.221 25 H 0.280 0.720 26 H 0.139 0.861 27 H 0.128 0.872 28 H 0.121 0.879 29 H 0.114 0.886 30 H 0.156 0.844 31 H 0.147 0.853 32 H 0.120 0.880 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.126 0.874 36 H 0.107 0.893 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.143 -7.136 3.632 12.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.198 4.198 3 Si 0.797 3.203 4 H -0.182 1.182 5 H -0.192 1.192 6 H -0.181 1.181 7 C -0.478 4.478 8 H 0.117 0.883 9 C 0.113 3.887 10 N -0.232 5.232 11 C -0.056 4.056 12 C -0.336 4.336 13 C -0.066 4.066 14 C -0.253 4.253 15 C 0.037 3.963 16 C -0.179 4.179 17 C -0.094 4.094 18 C -0.193 4.193 19 C 0.078 3.922 20 O -0.210 6.210 21 C -0.090 4.090 22 C -0.216 4.216 23 C -0.189 4.189 24 C -0.239 4.239 25 H 0.091 0.909 26 H 0.156 0.844 27 H 0.146 0.854 28 H 0.139 0.861 29 H 0.132 0.868 30 H 0.173 0.827 31 H 0.164 0.836 32 H 0.137 0.863 33 H 0.121 0.879 34 H 0.136 0.864 35 H 0.144 0.856 36 H 0.125 0.875 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.750 -6.200 3.655 12.119 hybrid contribution -0.106 -0.164 0.005 0.195 sum 9.644 -6.364 3.660 12.120 Atomic orbital electron populations 1.70205 1.08901 1.29283 1.28534 1.27033 0.95641 1.04533 0.92574 0.85277 0.79160 0.76044 0.79840 1.18172 1.19178 1.18053 1.20142 0.95452 0.89995 1.42200 0.88316 1.18945 0.88346 0.92400 0.88980 1.68714 1.07746 1.28338 1.18442 1.23063 0.99932 0.89116 0.93466 1.21564 0.94842 0.98453 1.18752 1.21233 0.94131 0.96303 0.94924 1.19678 0.92358 0.94359 1.18883 1.18550 0.91663 0.93257 0.92811 1.21346 0.94627 1.01422 1.00484 1.21116 0.93115 0.97319 0.97815 1.20589 1.00733 1.00323 0.97650 1.18937 0.90210 0.92347 0.90737 1.85921 1.35243 1.59837 1.39957 1.23321 0.95854 1.01259 0.88550 1.23547 1.04299 1.00763 0.92967 1.23464 1.03722 0.91352 1.00389 1.21329 0.93207 1.06208 1.03182 0.90889 0.84351 0.85379 0.86084 0.86807 0.82671 0.83562 0.86279 0.87930 0.86450 0.85635 0.87462 0.85577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.04 11.46 21.86 0.25 -39.79 16 2 C 0.03 1.27 5.50 85.33 0.47 1.74 16 3 Si 0.98 37.95 29.56 68.60 2.03 39.98 16 4 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 5 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 6 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 7 C -0.45 -23.96 7.96 23.37 0.19 -23.78 16 8 H 0.10 5.03 5.21 -2.91 -0.02 5.01 16 9 C 0.24 13.04 6.56 40.37 0.26 13.31 16 10 N -0.52 -29.05 7.85 -188.44 -1.48 -30.53 16 11 C 0.11 5.34 11.17 84.97 0.95 6.29 16 12 C -0.31 -13.55 10.10 22.51 0.23 -13.32 16 13 C -0.04 -1.84 9.67 22.65 0.22 -1.62 16 14 C -0.25 -12.13 5.53 -19.51 -0.11 -12.23 16 15 C 0.04 1.65 5.03 -20.05 -0.10 1.55 16 16 C -0.16 -6.43 7.55 22.56 0.17 -6.26 16 17 C -0.08 -2.45 10.02 22.22 0.22 -2.23 16 18 C -0.17 -5.50 9.98 22.45 0.22 -5.28 16 19 C 0.12 4.24 6.67 22.47 0.15 4.39 16 20 O -0.30 -9.27 10.39 -92.49 -0.96 -10.23 16 21 C -0.03 -0.87 6.20 30.60 0.19 -0.68 16 22 C -0.18 -3.59 10.48 30.62 0.32 -3.27 16 23 C -0.15 -2.81 10.48 30.62 0.32 -2.48 16 24 C -0.22 -8.46 8.69 22.64 0.20 -8.27 16 25 H 0.28 13.54 8.29 -92.71 -0.77 12.77 16 26 H 0.14 5.85 8.06 -2.91 -0.02 5.82 16 27 H 0.13 4.60 8.06 -2.91 -0.02 4.57 16 28 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 29 H 0.11 4.84 7.21 -2.91 -0.02 4.82 16 30 H 0.16 3.87 8.06 -2.91 -0.02 3.85 16 31 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 32 H 0.12 3.21 5.33 -2.39 -0.01 3.20 16 33 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.13 4.59 5.50 -2.91 -0.02 4.57 16 Total: -1.00 -64.15 316.59 4.83 -59.32 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: 1.09 Total: 33.41 kcal Atomic # 6 Polarization: -56.07 SS G_CDS: 3.90 Total: -52.16 kcal Atomic # 7 Polarization: -69.09 SS G_CDS: -1.23 Total: -70.32 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -0.96 Total: -10.23 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.03 Total: 39.98 kcal Total: -64.15 4.83 -59.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242806780.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.064 kcal (2) G-P(sol) polarization free energy of solvation -64.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds