Wall clock time and date at job start Tue Mar 31 2020 05:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30681 * 1 3 3 Si 1.86804 * 119.99934 * 2 1 4 4 H 1.48497 * 109.47066 * 272.54037 * 3 2 1 5 5 H 1.48494 * 109.46977 * 32.53828 * 3 2 1 6 6 H 1.48495 * 109.47022 * 152.54061 * 3 2 1 7 7 C 1.40181 * 120.00264 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99336 * 347.23721 * 7 2 1 9 9 C 1.40930 * 120.00161 * 167.24376 * 7 2 1 10 10 C 1.41115 * 121.10762 * 329.39974 * 9 7 2 11 11 C 1.36484 * 119.10640 * 180.02562 * 10 9 7 12 12 N 1.32207 * 121.50917 * 0.02562 * 11 10 9 13 13 C 1.31678 * 122.49640 * 359.72238 * 12 11 10 14 14 C 1.39300 * 120.66546 * 0.54726 * 13 12 11 15 15 C 1.47850 * 120.78114 * 179.75312 * 14 13 12 16 16 C 1.39714 * 120.12593 * 129.69532 * 15 14 13 17 17 C 1.37925 * 119.96221 * 180.02562 * 16 15 14 18 18 C 1.38331 * 120.20743 * 359.74439 * 17 16 15 19 19 C 1.38874 * 120.24649 * 0.51343 * 18 17 16 20 20 O 1.35909 * 119.98034 * 179.76722 * 19 18 17 21 21 C 1.42901 * 116.99827 * 174.43276 * 20 19 18 22 22 C 1.53002 * 117.49495 * 225.52620 * 21 20 19 23 23 C 1.53001 * 117.49785 * 156.87059 * 21 20 19 24 24 C 1.38440 * 120.03983 * 359.48708 * 19 18 17 25 25 H 0.96998 * 120.00071 * 0.02562 * 1 2 3 26 26 H 1.08006 * 120.44491 * 0.02562 * 10 9 7 27 27 H 1.08007 * 119.24445 * 179.97438 * 11 10 9 28 28 H 1.08000 * 119.66434 * 180.27381 * 13 12 11 29 29 H 1.08000 * 120.01705 * 359.97438 * 16 15 14 30 30 H 1.08005 * 119.89623 * 180.02562 * 17 16 15 31 31 H 1.08006 * 119.87881 * 180.25929 * 18 17 16 32 32 H 1.08995 * 115.54987 * 11.19565 * 21 20 19 33 33 H 1.08997 * 117.49787 * 0.02562 * 22 21 20 34 34 H 1.09002 * 117.49879 * 145.01767 * 22 21 20 35 35 H 1.09000 * 117.49661 * 214.97683 * 23 21 20 36 36 H 1.09001 * 117.50096 * 359.97438 * 23 21 20 37 37 H 1.08001 * 120.10291 * 180.23277 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.4346 2.0775 -1.3987 5 1 1.4661 2.6365 0.7530 6 1 3.5642 1.4253 0.6456 7 6 2.0078 -1.2140 -0.0005 8 1 1.4877 -2.1378 0.2057 9 6 3.3910 -1.2289 -0.2700 10 6 3.9778 -0.2706 -1.1237 11 6 5.3216 -0.3235 -1.3568 12 7 6.0831 -1.2509 -0.8019 13 6 5.6011 -2.1710 0.0074 14 6 4.2415 -2.2112 0.3080 15 6 3.6968 -3.2464 1.2120 16 6 2.8754 -2.8816 2.2817 17 6 2.3695 -3.8501 3.1233 18 6 2.6683 -5.1836 2.9089 19 6 3.4881 -5.5556 1.8515 20 8 3.7820 -6.8669 1.6487 21 6 4.5289 -7.1902 0.4741 22 6 4.0502 -8.3785 -0.3625 23 6 5.3230 -8.4979 0.4795 24 6 4.0015 -4.5919 1.0004 25 1 -0.4850 0.8400 -0.0004 26 1 3.3717 0.4943 -1.5864 27 1 5.7730 0.4086 -2.0101 28 1 6.2660 -2.9046 0.4390 29 1 2.6375 -1.8416 2.4500 30 1 1.7343 -3.5669 3.9497 31 1 2.2658 -5.9380 3.5688 32 1 4.9600 -6.3417 -0.0572 33 1 3.1655 -8.9133 -0.0171 34 1 4.1669 -8.3119 -1.4443 35 1 6.2764 -8.5099 -0.0486 36 1 5.2761 -9.1115 1.3791 37 1 4.6362 -4.8804 0.1755 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242806857.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:44 Heat of formation + Delta-G solvation = 44.683658 kcal Electronic energy + Delta-G solvation = -20950.088274 eV Core-core repulsion = 17851.260429 eV Total energy + Delta-G solvation = -3098.827845 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.88000 -38.78846 -37.32222 -35.11129 -34.17517 -32.13647 -31.19882 -29.40423 -28.35515 -26.06981 -23.80145 -22.61897 -22.52035 -21.88380 -20.47755 -20.44038 -17.99307 -17.82050 -16.01109 -15.86080 -15.41120 -15.14882 -14.71958 -14.54156 -14.36378 -14.13598 -13.77015 -13.37566 -13.05946 -12.75813 -12.66607 -12.09160 -11.73431 -11.65895 -11.64441 -11.18005 -11.04564 -10.85366 -10.76486 -10.68159 -10.31705 -9.95609 -9.85477 -9.48259 -8.76124 -8.24680 -8.17900 -7.86031 -7.41167 -7.17645 -4.81448 1.66784 1.99555 2.50659 2.52758 2.97347 3.08099 3.16614 3.22682 3.73124 3.78555 4.36718 4.44042 4.66958 4.83900 5.01904 5.19009 5.24267 5.39446 5.49601 5.52397 5.54821 5.74099 5.75647 5.94106 5.98179 6.00530 6.09066 6.18866 6.32567 6.43872 6.54674 6.76687 6.82600 6.96517 6.99893 7.10800 7.28719 7.34513 7.54670 7.81344 7.84323 8.10424 8.32543 8.51150 9.25976 9.81747 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.019266 B = 0.005383 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.023042 B = 5200.136856 C = 6007.998744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.084 3.916 3 Si 0.914 3.086 4 H -0.267 1.267 5 H -0.289 1.289 6 H -0.244 1.244 7 C -0.420 4.420 8 H 0.101 0.899 9 C 0.123 3.877 10 C -0.283 4.283 11 C 0.115 3.885 12 N -0.578 5.578 13 C 0.138 3.862 14 C -0.221 4.221 15 C 0.055 3.945 16 C -0.126 4.126 17 C -0.086 4.086 18 C -0.172 4.172 19 C 0.121 3.879 20 O -0.290 6.290 21 C 0.006 3.994 22 C -0.187 4.187 23 C -0.174 4.174 24 C -0.212 4.212 25 H 0.290 0.710 26 H 0.109 0.891 27 H 0.124 0.876 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.127 0.873 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.361 -7.997 2.188 9.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.138 4.138 3 Si 0.741 3.259 4 H -0.193 1.193 5 H -0.216 1.216 6 H -0.167 1.167 7 C -0.449 4.449 8 H 0.119 0.881 9 C 0.115 3.885 10 C -0.305 4.305 11 C -0.035 4.035 12 N -0.292 5.292 13 C -0.018 4.018 14 C -0.226 4.226 15 C 0.054 3.946 16 C -0.145 4.145 17 C -0.104 4.104 18 C -0.190 4.190 19 C 0.077 3.923 20 O -0.204 6.204 21 C -0.051 4.051 22 C -0.224 4.224 23 C -0.211 4.211 24 C -0.231 4.231 25 H 0.101 0.899 26 H 0.127 0.873 27 H 0.142 0.858 28 H 0.144 0.856 29 H 0.147 0.853 30 H 0.140 0.860 31 H 0.137 0.863 32 H 0.144 0.856 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.927 -8.046 2.109 9.668 hybrid contribution -0.798 0.845 -0.120 1.168 sum 4.129 -7.201 1.990 8.536 Atomic orbital electron populations 1.69582 1.08160 1.30843 1.32572 1.26269 0.94845 1.01892 0.90804 0.86277 0.81005 0.79333 0.79314 1.19292 1.21595 1.16679 1.19550 0.91017 0.95943 1.38398 0.88140 1.17829 0.93190 0.89274 0.88233 1.21658 0.96526 1.05552 1.06758 1.21677 0.90745 0.95017 0.96040 1.67416 1.39569 1.07170 1.15082 1.22219 0.91885 0.94767 0.92916 1.19506 0.94018 1.02881 1.06239 1.18409 0.92920 0.90954 0.92295 1.21316 0.98407 1.00070 0.94682 1.20811 0.98816 0.91747 0.99049 1.20236 1.02854 0.96488 0.99468 1.18755 0.96073 0.81832 0.95682 1.85949 1.69803 1.23380 1.41240 1.23016 0.99213 0.93309 0.89535 1.23441 0.98667 1.01924 0.98376 1.23331 0.96053 0.99225 1.02514 1.21289 1.06682 0.92814 1.02281 0.89892 0.87322 0.85814 0.85562 0.85320 0.86007 0.86319 0.85556 0.88046 0.87894 0.87754 0.88066 0.85868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.53 13.92 55.56 0.77 -18.76 16 2 C 0.08 2.04 5.48 -17.31 -0.09 1.95 16 3 Si 0.91 19.50 24.43 -169.99 -4.15 15.35 16 4 H -0.27 -5.51 6.66 56.52 0.38 -5.13 16 5 H -0.29 -5.95 7.11 56.52 0.40 -5.54 16 6 H -0.24 -5.40 6.68 56.52 0.38 -5.03 16 7 C -0.42 -10.53 7.69 -37.83 -0.29 -10.83 16 8 H 0.10 2.71 7.15 -52.48 -0.38 2.33 16 9 C 0.12 2.96 5.16 -106.26 -0.55 2.41 16 10 C -0.28 -6.52 7.07 -39.12 -0.28 -6.80 16 11 C 0.12 2.50 11.09 -18.02 -0.20 2.30 16 12 N -0.58 -12.87 10.32 -13.37 -0.14 -13.00 16 13 C 0.14 2.95 10.71 -17.22 -0.18 2.77 16 14 C -0.22 -4.97 5.54 -104.04 -0.58 -5.54 16 15 C 0.06 1.14 5.01 -104.92 -0.53 0.61 16 16 C -0.13 -2.51 8.19 -39.14 -0.32 -2.83 16 17 C -0.09 -1.48 10.03 -39.66 -0.40 -1.88 16 18 C -0.17 -2.90 9.98 -39.31 -0.39 -3.29 16 19 C 0.12 2.13 6.67 -39.27 -0.26 1.86 16 20 O -0.29 -4.71 10.39 -19.45 -0.20 -4.91 16 21 C 0.01 0.08 6.20 -26.73 -0.17 -0.08 16 22 C -0.19 -2.06 10.48 -26.69 -0.28 -2.34 16 23 C -0.17 -1.81 10.48 -26.69 -0.28 -2.09 16 24 C -0.21 -3.93 8.69 -39.01 -0.34 -4.27 16 25 H 0.29 6.49 8.29 -40.82 -0.34 6.15 16 26 H 0.11 2.44 4.46 -52.48 -0.23 2.21 16 27 H 0.12 2.30 8.06 -52.48 -0.42 1.88 16 28 H 0.13 2.37 8.05 -52.49 -0.42 1.95 16 29 H 0.13 2.67 7.36 -52.49 -0.39 2.28 16 30 H 0.12 1.77 8.06 -52.48 -0.42 1.34 16 31 H 0.12 1.74 8.06 -52.48 -0.42 1.32 16 32 H 0.13 1.68 5.34 -51.93 -0.28 1.40 16 33 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.12 2.11 5.51 -52.49 -0.29 1.82 16 LS Contribution 310.89 15.07 4.68 4.68 Total: -1.00 -27.09 310.89 -8.30 -35.39 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -4.13 Total: 9.31 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: -5.13 Total: -28.06 kcal Atomic # 7 Polarization: -32.40 SS G_CDS: 0.64 Total: -31.76 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -0.20 Total: -4.91 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.15 Total: 15.35 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -27.09 -8.30 -35.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242806857.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.070 kcal (2) G-P(sol) polarization free energy of solvation -27.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds