Wall clock time and date at job start Tue Mar 31 2020 05:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30681 * 1 3 3 Si 1.86804 * 119.99934 * 2 1 4 4 H 1.48497 * 109.47066 * 272.54037 * 3 2 1 5 5 H 1.48494 * 109.46977 * 32.53828 * 3 2 1 6 6 H 1.48495 * 109.47022 * 152.54061 * 3 2 1 7 7 C 1.40181 * 120.00264 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99336 * 347.23721 * 7 2 1 9 9 C 1.40930 * 120.00161 * 167.24376 * 7 2 1 10 10 C 1.41115 * 121.10762 * 329.39974 * 9 7 2 11 11 C 1.36484 * 119.10640 * 180.02562 * 10 9 7 12 12 N 1.32207 * 121.50917 * 0.02562 * 11 10 9 13 13 C 1.31678 * 122.49640 * 359.72238 * 12 11 10 14 14 C 1.39300 * 120.66546 * 0.54726 * 13 12 11 15 15 C 1.47850 * 120.78114 * 179.75312 * 14 13 12 16 16 C 1.39714 * 120.12593 * 129.69532 * 15 14 13 17 17 C 1.37925 * 119.96221 * 180.02562 * 16 15 14 18 18 C 1.38331 * 120.20743 * 359.74439 * 17 16 15 19 19 C 1.38874 * 120.24649 * 0.51343 * 18 17 16 20 20 O 1.35909 * 119.98034 * 179.76722 * 19 18 17 21 21 C 1.42901 * 116.99827 * 174.43276 * 20 19 18 22 22 C 1.53002 * 117.49495 * 225.52620 * 21 20 19 23 23 C 1.53001 * 117.49785 * 156.87059 * 21 20 19 24 24 C 1.38440 * 120.03983 * 359.48708 * 19 18 17 25 25 H 0.96998 * 120.00071 * 0.02562 * 1 2 3 26 26 H 1.08006 * 120.44491 * 0.02562 * 10 9 7 27 27 H 1.08007 * 119.24445 * 179.97438 * 11 10 9 28 28 H 1.08000 * 119.66434 * 180.27381 * 13 12 11 29 29 H 1.08000 * 120.01705 * 359.97438 * 16 15 14 30 30 H 1.08005 * 119.89623 * 180.02562 * 17 16 15 31 31 H 1.08006 * 119.87881 * 180.25929 * 18 17 16 32 32 H 1.08995 * 115.54987 * 11.19565 * 21 20 19 33 33 H 1.08997 * 117.49787 * 0.02562 * 22 21 20 34 34 H 1.09002 * 117.49879 * 145.01767 * 22 21 20 35 35 H 1.09000 * 117.49661 * 214.97683 * 23 21 20 36 36 H 1.09001 * 117.50096 * 359.97438 * 23 21 20 37 37 H 1.08001 * 120.10291 * 180.23277 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.4346 2.0775 -1.3987 5 1 1.4661 2.6365 0.7530 6 1 3.5642 1.4253 0.6456 7 6 2.0078 -1.2140 -0.0005 8 1 1.4877 -2.1378 0.2057 9 6 3.3910 -1.2289 -0.2700 10 6 3.9778 -0.2706 -1.1237 11 6 5.3216 -0.3235 -1.3568 12 7 6.0831 -1.2509 -0.8019 13 6 5.6011 -2.1710 0.0074 14 6 4.2415 -2.2112 0.3080 15 6 3.6968 -3.2464 1.2120 16 6 2.8754 -2.8816 2.2817 17 6 2.3695 -3.8501 3.1233 18 6 2.6683 -5.1836 2.9089 19 6 3.4881 -5.5556 1.8515 20 8 3.7820 -6.8669 1.6487 21 6 4.5289 -7.1902 0.4741 22 6 4.0502 -8.3785 -0.3625 23 6 5.3230 -8.4979 0.4795 24 6 4.0015 -4.5919 1.0004 25 1 -0.4850 0.8400 -0.0004 26 1 3.3717 0.4943 -1.5864 27 1 5.7730 0.4086 -2.0101 28 1 6.2660 -2.9046 0.4390 29 1 2.6375 -1.8416 2.4500 30 1 1.7343 -3.5669 3.9497 31 1 2.2658 -5.9380 3.5688 32 1 4.9600 -6.3417 -0.0572 33 1 3.1655 -8.9133 -0.0171 34 1 4.1669 -8.3119 -1.4443 35 1 6.2764 -8.5099 -0.0486 36 1 5.2761 -9.1115 1.3791 37 1 4.6362 -4.8804 0.1755 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242806857.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:44 Heat of formation + Delta-G solvation = 30.809011 kcal Electronic energy + Delta-G solvation = -20950.689923 eV Core-core repulsion = 17851.260429 eV Total energy + Delta-G solvation = -3099.429495 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.24442 -40.38559 -38.63728 -36.26233 -35.93099 -33.76457 -32.92525 -30.85924 -29.91035 -27.86914 -25.18066 -24.07423 -23.59223 -23.35834 -22.01267 -21.71363 -19.70668 -19.25356 -17.68089 -17.25157 -16.85669 -16.41910 -16.32844 -16.05523 -15.82285 -15.57018 -15.01377 -14.87513 -14.62551 -14.39726 -14.26524 -13.44066 -13.31048 -13.15507 -12.83450 -12.69130 -12.55653 -12.45674 -12.34686 -11.97721 -11.70211 -11.40258 -11.20321 -10.97658 -10.38325 -9.98952 -9.92807 -9.36992 -9.01056 -8.89178 -6.68642 0.11040 0.55724 0.71717 0.89632 1.24137 1.38796 1.44606 2.04901 2.09324 2.61100 2.75854 2.97709 3.46138 3.64638 3.78692 3.92758 3.97345 4.03925 4.11934 4.23438 4.35488 4.38907 4.50981 4.59347 4.65122 4.70497 4.76552 4.87105 4.96229 5.03166 5.08173 5.17672 5.23371 5.28836 5.43628 5.59813 5.63372 5.88870 5.91934 6.04712 6.21604 6.49261 6.54059 6.64104 7.50468 8.05209 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.019266 B = 0.005383 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.023042 B = 5200.136856 C = 6007.998744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.055 3.945 3 Si 0.963 3.037 4 H -0.252 1.252 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.441 4.441 8 H 0.067 0.933 9 C 0.106 3.894 10 C -0.296 4.296 11 C 0.113 3.887 12 N -0.580 5.580 13 C 0.133 3.867 14 C -0.224 4.224 15 C 0.029 3.971 16 C -0.147 4.147 17 C -0.081 4.081 18 C -0.169 4.169 19 C 0.121 3.879 20 O -0.296 6.296 21 C -0.033 4.033 22 C -0.181 4.181 23 C -0.152 4.152 24 C -0.214 4.214 25 H 0.299 0.701 26 H 0.114 0.886 27 H 0.159 0.841 28 H 0.152 0.848 29 H 0.109 0.891 30 H 0.149 0.851 31 H 0.146 0.854 32 H 0.123 0.877 33 H 0.100 0.900 34 H 0.118 0.882 35 H 0.127 0.873 36 H 0.106 0.894 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.792 -8.926 2.152 10.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.164 4.164 3 Si 0.787 3.213 4 H -0.177 1.177 5 H -0.203 1.203 6 H -0.182 1.182 7 C -0.471 4.471 8 H 0.086 0.914 9 C 0.098 3.902 10 C -0.318 4.318 11 C -0.037 4.037 12 N -0.294 5.294 13 C -0.022 4.022 14 C -0.229 4.229 15 C 0.029 3.971 16 C -0.165 4.165 17 C -0.099 4.099 18 C -0.188 4.188 19 C 0.076 3.924 20 O -0.210 6.210 21 C -0.089 4.089 22 C -0.218 4.218 23 C -0.189 4.189 24 C -0.233 4.233 25 H 0.110 0.890 26 H 0.131 0.869 27 H 0.176 0.824 28 H 0.170 0.830 29 H 0.127 0.873 30 H 0.167 0.833 31 H 0.163 0.837 32 H 0.141 0.859 33 H 0.119 0.881 34 H 0.136 0.864 35 H 0.145 0.855 36 H 0.124 0.876 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.356 -8.996 2.069 11.207 hybrid contribution -1.147 0.926 -0.090 1.477 sum 5.209 -8.070 1.978 9.806 Atomic orbital electron populations 1.69598 1.09078 1.32029 1.34227 1.26825 0.95355 1.03957 0.90247 0.85533 0.79201 0.76586 0.79966 1.17716 1.20269 1.18246 1.19362 0.91684 0.95268 1.40757 0.91446 1.18070 0.93105 0.90384 0.88605 1.21800 0.97394 1.05692 1.06936 1.22183 0.90321 0.95299 0.95929 1.67510 1.39722 1.07217 1.14961 1.22606 0.91870 0.95063 0.92682 1.19816 0.94471 1.02714 1.05865 1.18460 0.94346 0.91548 0.92790 1.21275 0.99537 0.99837 0.95861 1.21079 0.98298 0.91502 0.99044 1.20586 1.02010 0.96805 0.99387 1.18893 0.95598 0.82443 0.95426 1.85933 1.70211 1.22178 1.42653 1.23345 1.01315 0.94539 0.89694 1.23549 0.99185 0.99871 0.99181 1.23464 0.96673 0.96236 1.02493 1.21359 1.06890 0.92133 1.02886 0.88976 0.86869 0.82381 0.83042 0.87315 0.83315 0.83665 0.85935 0.88120 0.86390 0.85509 0.87550 0.84859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.04 13.92 21.86 0.30 -41.74 16 2 C 0.05 2.73 5.48 85.34 0.47 3.20 16 3 Si 0.96 40.23 24.43 68.60 1.68 41.91 16 4 H -0.25 -9.84 6.66 99.48 0.66 -9.18 16 5 H -0.28 -10.84 7.11 99.48 0.71 -10.14 16 6 H -0.26 -11.31 6.68 99.48 0.66 -10.65 16 7 C -0.44 -23.10 7.69 23.40 0.18 -22.92 16 8 H 0.07 3.88 7.15 -2.91 -0.02 3.86 16 9 C 0.11 5.24 5.16 -20.93 -0.11 5.13 16 10 C -0.30 -13.53 7.07 22.57 0.16 -13.37 16 11 C 0.11 4.73 11.09 84.23 0.93 5.67 16 12 N -0.58 -24.88 10.32 -196.20 -2.02 -26.90 16 13 C 0.13 5.58 10.71 84.97 0.91 6.49 16 14 C -0.22 -10.18 5.54 -19.49 -0.11 -10.29 16 15 C 0.03 1.24 5.01 -20.06 -0.10 1.14 16 16 C -0.15 -6.01 8.19 22.55 0.18 -5.82 16 17 C -0.08 -2.77 10.03 22.22 0.22 -2.55 16 18 C -0.17 -5.49 9.98 22.44 0.22 -5.26 16 19 C 0.12 4.16 6.67 22.47 0.15 4.31 16 20 O -0.30 -9.19 10.39 -92.52 -0.96 -10.15 16 21 C -0.03 -0.83 6.20 30.60 0.19 -0.64 16 22 C -0.18 -3.59 10.48 30.62 0.32 -3.27 16 23 C -0.15 -2.73 10.48 30.62 0.32 -2.41 16 24 C -0.21 -7.93 8.69 22.64 0.20 -7.73 16 25 H 0.30 13.64 8.29 -92.71 -0.77 12.87 16 26 H 0.11 4.99 4.46 -2.91 -0.01 4.98 16 27 H 0.16 5.41 8.06 -2.91 -0.02 5.39 16 28 H 0.15 5.48 8.05 -2.91 -0.02 5.45 16 29 H 0.11 4.80 7.36 -2.91 -0.02 4.78 16 30 H 0.15 4.14 8.06 -2.91 -0.02 4.11 16 31 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 32 H 0.12 3.13 5.34 -2.39 -0.01 3.11 16 33 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.13 4.53 5.51 -2.91 -0.02 4.51 16 Total: -1.00 -58.92 310.89 4.15 -54.77 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: 1.01 Total: 30.42 kcal Atomic # 6 Polarization: -52.45 SS G_CDS: 4.14 Total: -48.31 kcal Atomic # 7 Polarization: -66.92 SS G_CDS: -1.72 Total: -68.64 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -0.96 Total: -10.15 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 1.68 Total: 41.91 kcal Total: -58.92 4.15 -54.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242806857.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.582 kcal (2) G-P(sol) polarization free energy of solvation -58.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds