Wall clock time and date at job start Tue Mar 31 2020 05:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32556 * 1 3 3 C 1.50693 * 120.00047 * 2 1 4 4 C 1.47837 * 119.99672 * 180.02562 * 2 1 3 5 5 C 1.39617 * 120.49364 * 115.00005 * 4 2 1 6 6 N 1.31722 * 120.83958 * 179.97438 * 5 4 2 7 7 C 1.31776 * 122.01864 * 0.02562 * 6 5 4 8 8 C 1.39444 * 120.89642 * 0.02562 * 7 6 5 9 9 C 1.48309 * 120.47134 * 179.97438 * 8 7 6 10 10 C 1.39279 * 120.16015 * 129.99657 * 9 8 7 11 11 C 1.38011 * 119.94759 * 180.02562 * 10 9 8 12 12 C 1.38447 * 120.27228 * 359.97438 * 11 10 9 13 13 C 1.38116 * 120.31782 * 0.02562 * 12 11 10 14 14 C 1.38758 * 120.04682 * 359.68551 * 13 12 11 15 15 O 1.35673 * 120.13231 * 180.29789 * 14 13 12 16 16 C 1.34807 * 116.99906 * 354.39963 * 15 14 13 17 17 H 1.07999 * 120.00334 * 5.05682 * 16 15 14 18 18 C 1.38655 * 119.99551 * 185.06703 * 16 15 14 19 19 N 1.31549 * 120.00280 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99608 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47169 * 59.99662 * 20 18 16 22 22 H 1.48506 * 109.46901 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47170 * 299.99413 * 20 18 16 24 24 C 1.39580 * 119.05450 * 359.68260 * 8 7 6 25 25 H 1.08001 * 119.99979 * 179.97438 * 1 2 3 26 26 H 1.07995 * 120.00012 * 359.72260 * 1 2 3 27 27 H 1.09005 * 109.46945 * 90.00515 * 3 2 1 28 28 H 1.09003 * 109.47265 * 209.99758 * 3 2 1 29 29 H 1.08993 * 109.47220 * 330.00476 * 3 2 1 30 30 H 1.07995 * 119.58045 * 0.02562 * 5 4 2 31 31 H 1.08002 * 119.54979 * 179.97438 * 7 6 5 32 32 H 1.08004 * 120.03021 * 0.02610 * 10 9 8 33 33 H 1.08006 * 119.86900 * 179.97438 * 11 10 9 34 34 H 1.07996 * 119.84096 * 180.02562 * 12 11 10 35 35 H 1.08003 * 119.97454 * 179.97438 * 13 12 11 36 36 H 0.96996 * 120.00390 * 179.97438 * 19 18 16 37 37 H 1.08004 * 120.90700 * 180.30012 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0790 1.3050 0.0000 4 6 2.0647 -1.2803 -0.0006 5 6 2.8592 -1.6392 -1.0911 6 7 3.5210 -2.7781 -1.0986 7 6 3.4663 -3.6246 -0.0902 8 6 2.6960 -3.3454 1.0382 9 6 2.6408 -4.3051 2.1675 10 6 2.8594 -3.8654 3.4708 11 6 2.8075 -4.7624 4.5184 12 6 2.5383 -6.0994 4.2798 13 6 2.3199 -6.5475 2.9917 14 6 2.3630 -5.6560 1.9293 15 8 2.1427 -6.0932 0.6639 16 6 2.0023 -7.4228 0.4916 17 1 1.9852 -8.0797 1.3487 18 6 1.8802 -7.9471 -0.7862 19 7 1.9008 -7.1471 -1.8302 20 14 1.6865 -9.7897 -1.0250 21 1 0.4596 -10.2529 -0.3283 22 1 1.5760 -10.0920 -2.4748 23 1 2.8693 -10.4889 -0.4620 24 6 1.9826 -2.1469 1.0922 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 0.0045 27 1 2.2608 1.6196 1.0277 28 1 3.0315 1.1747 -0.5138 29 1 1.4900 2.0647 -0.5137 30 1 2.9327 -0.9743 -1.9389 31 1 4.0251 -4.5476 -0.1386 32 1 3.0693 -2.8233 3.6617 33 1 2.9776 -4.4202 5.5286 34 1 2.4989 -6.7952 5.1047 35 1 2.1107 -7.5917 2.8118 36 1 1.8158 -7.5139 -2.7241 37 1 1.3804 -1.8981 1.9536 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243585253.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:23 Heat of formation + Delta-G solvation = 43.402813 kcal Electronic energy + Delta-G solvation = -20843.923318 eV Core-core repulsion = 17745.039932 eV Total energy + Delta-G solvation = -3098.883386 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.88724 -38.78382 -36.44956 -35.46839 -32.78619 -32.29845 -30.31601 -29.27347 -28.27956 -27.18684 -25.43682 -23.41780 -23.34473 -21.37380 -20.94988 -18.72846 -18.03718 -16.97960 -16.43445 -15.83901 -15.38288 -14.80658 -14.58511 -14.39305 -13.96891 -13.68462 -13.61471 -13.18475 -12.97279 -12.87272 -12.59841 -12.55287 -12.16107 -11.74378 -11.73740 -11.41492 -11.27754 -10.93163 -10.84056 -10.70477 -10.49426 -9.51882 -9.48206 -9.31201 -8.88803 -8.76790 -8.46856 -7.90284 -7.21212 -6.49269 -4.09029 1.37211 1.63965 2.22812 2.29797 2.33824 3.10538 3.11749 3.14740 3.91583 4.28006 4.52208 4.74118 5.01448 5.03504 5.10952 5.14838 5.30531 5.39973 5.47805 5.53671 5.57921 5.61565 5.72451 5.82963 5.88832 5.94432 6.10995 6.15664 6.29545 6.47386 6.60161 6.60513 6.70798 6.78434 6.83364 7.01669 7.11266 7.24724 7.28483 7.36858 7.70875 7.92727 8.57024 8.94357 9.60775 10.66594 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015187 B = 0.005636 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.217479 B = 4966.858721 C = 6286.271796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.080 4.080 3 C -0.113 4.113 4 C -0.117 4.117 5 C 0.095 3.905 6 N -0.479 5.479 7 C 0.139 3.861 8 C -0.056 4.056 9 C -0.137 4.137 10 C -0.057 4.057 11 C -0.216 4.216 12 C -0.067 4.067 13 C -0.232 4.232 14 C 0.165 3.835 15 O -0.164 6.164 16 C -0.398 4.398 17 H 0.092 0.908 18 C 0.044 3.956 19 N -0.851 5.851 20 Si 0.940 3.060 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.269 1.269 24 C -0.066 4.066 25 H 0.100 0.900 26 H 0.102 0.898 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.147 0.853 31 H 0.157 0.843 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.130 0.870 36 H 0.272 0.728 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.037 10.158 5.979 11.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.081 4.081 3 C -0.170 4.170 4 C -0.119 4.119 5 C -0.062 4.062 6 N -0.186 5.186 7 C -0.018 4.018 8 C -0.058 4.058 9 C -0.139 4.139 10 C -0.076 4.076 11 C -0.235 4.235 12 C -0.085 4.085 13 C -0.251 4.251 14 C 0.110 3.890 15 O -0.066 6.066 16 C -0.474 4.474 17 H 0.110 0.890 18 C -0.162 4.162 19 N -0.484 5.484 20 Si 0.764 3.236 21 H -0.195 1.195 22 H -0.202 1.202 23 H -0.194 1.194 24 C -0.091 4.091 25 H 0.118 0.882 26 H 0.120 0.880 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.164 0.836 31 H 0.174 0.826 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.147 0.853 36 H 0.082 0.918 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.442 10.033 4.725 11.098 hybrid contribution -0.800 -0.919 0.693 1.402 sum -0.357 9.114 5.418 10.609 Atomic orbital electron populations 1.24128 0.94701 1.01996 1.01254 1.20370 0.94340 0.92889 1.00462 1.20831 1.00212 0.93809 1.02143 1.19758 1.00537 0.95378 0.96239 1.22738 0.93078 0.93784 0.96591 1.67580 1.20803 1.02981 1.27247 1.22956 0.94619 0.96975 0.87252 1.19551 0.97118 0.93660 0.95512 1.17675 1.13416 0.90552 0.92247 1.20688 0.97582 0.98409 0.90898 1.20519 1.11266 0.93795 0.97881 1.20838 0.96635 0.95255 0.95819 1.21123 1.10993 1.00640 0.92382 1.19297 0.91968 0.91653 0.86112 1.83971 1.75745 1.25786 1.21097 1.21290 1.52647 0.79476 0.93979 0.89038 1.25286 0.96406 1.00339 0.94183 1.70034 1.44383 1.35344 0.98646 0.85805 0.79210 0.80611 0.77970 1.19524 1.20231 1.19419 1.21668 0.97236 0.92731 0.97491 0.88178 0.88018 0.91392 0.91640 0.91716 0.83615 0.82553 0.86977 0.87402 0.87349 0.85267 0.91797 0.85416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.24 13.96 28.82 0.40 -1.83 16 2 C -0.08 -1.04 5.47 -102.61 -0.56 -1.60 16 3 C -0.11 -1.14 10.02 36.00 0.36 -0.78 16 4 C -0.12 -1.91 5.31 -104.91 -0.56 -2.47 16 5 C 0.10 1.68 10.87 -17.08 -0.19 1.49 16 6 N -0.48 -10.00 10.33 -12.64 -0.13 -10.13 16 7 C 0.14 3.04 9.96 -17.13 -0.17 2.87 16 8 C -0.06 -1.15 5.28 -104.80 -0.55 -1.70 16 9 C -0.14 -2.84 5.51 -104.72 -0.58 -3.42 16 10 C -0.06 -1.02 9.53 -39.28 -0.37 -1.39 16 11 C -0.22 -3.61 10.03 -39.59 -0.40 -4.00 16 12 C -0.07 -1.19 10.03 -39.55 -0.40 -1.58 16 13 C -0.23 -4.87 9.16 -39.43 -0.36 -5.23 16 14 C 0.16 3.85 6.56 -38.75 -0.25 3.60 16 15 O -0.16 -4.46 8.15 0.35 0.00 -4.45 16 16 C -0.40 -10.74 9.49 30.89 0.29 -10.45 16 17 H 0.09 2.28 5.21 -52.49 -0.27 2.01 16 18 C 0.04 1.17 5.49 -17.52 -0.10 1.08 16 19 N -0.85 -24.48 13.67 55.48 0.76 -23.72 16 20 Si 0.94 20.15 29.55 -169.99 -5.02 15.13 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 24 C -0.07 -1.16 9.36 -38.53 -0.36 -1.52 16 25 H 0.10 1.34 8.05 -52.49 -0.42 0.92 16 26 H 0.10 0.98 8.05 -52.49 -0.42 0.56 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.65 8.05 -51.93 -0.42 0.23 16 29 H 0.06 0.54 8.07 -51.93 -0.42 0.12 16 30 H 0.15 2.13 8.06 -52.49 -0.42 1.71 16 31 H 0.16 3.66 7.71 -52.49 -0.40 3.26 16 32 H 0.11 1.69 8.04 -52.48 -0.42 1.27 16 33 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 34 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.13 2.69 5.64 -52.48 -0.30 2.40 16 36 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.13 2.01 8.06 -52.48 -0.42 1.59 16 LS Contribution 326.56 15.07 4.92 4.92 Total: -1.00 -30.04 326.56 -7.59 -37.62 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -4.33 Total: 7.57 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: -3.79 Total: -26.94 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: 0.63 Total: -33.85 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: 0.00 Total: -4.45 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.04 -7.59 -37.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585253.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.027 kcal (2) G-P(sol) polarization free energy of solvation -30.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds