Wall clock time and date at job start Tue Mar 31 2020 05:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32650 * 1 3 3 C 1.50700 * 119.99960 * 2 1 4 4 C 1.47710 * 119.99873 * 180.02562 * 2 1 3 5 5 C 1.40133 * 120.45462 * 64.99263 * 4 2 1 6 6 C 1.38031 * 118.39476 * 179.72273 * 5 4 2 7 7 C 1.39560 * 119.21628 * 0.27802 * 6 5 4 8 8 C 1.48097 * 119.57943 * 179.97438 * 7 6 5 9 9 C 1.39392 * 120.17349 * 359.72277 * 8 7 6 10 10 C 1.37965 * 119.93462 * 179.72804 * 9 8 7 11 11 C 1.38477 * 120.28641 * 0.56699 * 10 9 8 12 12 C 1.38098 * 120.34737 * 359.70776 * 11 10 9 13 13 C 1.38771 * 120.05254 * 359.97438 * 12 11 10 14 14 O 1.35634 * 120.13696 * 180.02562 * 13 12 11 15 15 C 1.34805 * 117.00255 * 354.37894 * 14 13 12 16 16 H 1.08005 * 119.99830 * 5.00405 * 15 14 13 17 17 C 1.38657 * 119.99982 * 185.00881 * 15 14 13 18 18 N 1.31554 * 119.99805 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 119.99977 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47112 * 89.99758 * 19 17 15 21 21 H 1.48499 * 109.46946 * 210.00077 * 19 17 15 22 22 H 1.48499 * 109.46940 * 329.99499 * 19 17 15 23 23 N 1.32787 * 120.83696 * 359.97438 * 7 6 5 24 24 C 1.31554 * 121.75365 * 0.02562 * 23 7 6 25 25 H 1.08003 * 120.00200 * 179.97438 * 1 2 3 26 26 H 1.08005 * 120.00222 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47148 * 270.00308 * 3 2 1 28 28 H 1.08998 * 109.47326 * 30.00975 * 3 2 1 29 29 H 1.08998 * 109.46655 * 150.00825 * 3 2 1 30 30 H 1.08001 * 120.79850 * 359.97438 * 5 4 2 31 31 H 1.08004 * 120.39000 * 180.29055 * 6 5 4 32 32 H 1.08000 * 120.02891 * 0.02562 * 9 8 7 33 33 H 1.07996 * 119.85324 * 180.29638 * 10 9 8 34 34 H 1.08000 * 119.82827 * 179.72137 * 11 10 9 35 35 H 1.07999 * 119.97042 * 180.02562 * 12 11 10 36 36 H 0.97005 * 119.99727 * 179.97438 * 18 17 15 37 37 H 1.07999 * 119.65226 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3265 0.0000 0.0000 3 6 2.0800 1.3051 0.0000 4 6 2.0650 -1.2792 -0.0006 5 6 1.9779 -2.1492 -1.0957 6 6 2.6903 -3.3307 -1.0538 7 6 3.4633 -3.6205 0.0715 8 6 4.2305 -4.8861 0.1253 9 6 4.1758 -5.7843 -0.9392 10 6 4.8969 -6.9593 -0.8864 11 6 5.6667 -7.2568 0.2256 12 6 5.7249 -6.3781 1.2893 13 6 5.0105 -5.1891 1.2484 14 8 5.0669 -4.3245 2.2920 15 6 5.7405 -4.7300 3.3870 16 1 6.2727 -5.6698 3.3764 17 6 5.7500 -3.9407 4.5269 18 7 6.4069 -4.3366 5.5957 19 14 4.8299 -2.3150 4.5450 20 1 3.4384 -2.5390 5.0126 21 1 5.5144 -1.3691 5.4626 22 1 4.8058 -1.7447 3.1741 23 7 3.5195 -2.7758 1.0946 24 6 2.8552 -1.6403 1.0922 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5401 0.9353 0.0004 27 1 2.2616 1.6198 -1.0277 28 1 1.4910 2.0647 0.5140 29 1 3.0324 1.1747 0.5137 30 1 1.3712 -1.8993 -1.9535 31 1 2.6503 -4.0226 -1.8821 32 1 3.5732 -5.5584 -1.8066 33 1 4.8573 -7.6520 -1.7140 34 1 6.2247 -8.1808 0.2610 35 1 6.3276 -6.6160 2.1533 36 1 6.4138 -3.7842 6.3931 37 1 2.9252 -0.9786 1.9429 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243585487.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:27 Heat of formation + Delta-G solvation = 56.168472 kcal Electronic energy + Delta-G solvation = -20992.617381 eV Core-core repulsion = 17894.287555 eV Total energy + Delta-G solvation = -3098.329826 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.01746 -38.83596 -36.56384 -35.53483 -32.43629 -32.04041 -31.54774 -29.27976 -28.33798 -27.25976 -25.30203 -23.82337 -23.18733 -21.32772 -20.78368 -19.03772 -17.84393 -17.50646 -16.31078 -15.85987 -15.53725 -14.70537 -14.42593 -14.23477 -13.94392 -13.80688 -13.61375 -13.46642 -13.21176 -12.95697 -12.71197 -12.36244 -12.29544 -12.07599 -11.76005 -11.44387 -11.18017 -10.86475 -10.73538 -10.68516 -10.01344 -9.70381 -9.47125 -9.34290 -9.00779 -8.85099 -8.61594 -7.87547 -7.18285 -6.43586 -4.05347 0.98676 1.68047 2.03457 2.27038 2.41505 3.29524 3.34158 3.58171 4.13049 4.33465 4.59609 4.64789 4.82792 4.84765 4.97748 5.05331 5.13768 5.19715 5.37521 5.45247 5.53132 5.57220 5.62691 5.73079 5.86540 5.89536 5.99750 6.08924 6.10821 6.31368 6.42224 6.49636 6.57700 6.67591 6.72325 6.95725 7.09223 7.19831 7.25754 7.57090 7.76154 8.00609 8.57411 8.92611 9.59418 10.62236 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012706 B = 0.007368 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.185204 B = 3799.355866 C = 5848.174651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.074 4.074 3 C -0.117 4.117 4 C -0.141 4.141 5 C -0.063 4.063 6 C -0.182 4.182 7 C 0.202 3.798 8 C -0.148 4.148 9 C -0.050 4.050 10 C -0.217 4.217 11 C -0.060 4.060 12 C -0.228 4.228 13 C 0.187 3.813 14 O -0.159 6.159 15 C -0.391 4.391 16 H 0.105 0.895 17 C 0.068 3.932 18 N -0.874 5.874 19 Si 0.900 3.100 20 H -0.276 1.276 21 H -0.291 1.291 22 H -0.233 1.233 23 N -0.447 5.447 24 C 0.122 3.878 25 H 0.098 0.902 26 H 0.101 0.899 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.127 0.873 31 H 0.132 0.868 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.135 0.865 36 H 0.280 0.720 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.529 5.223 -12.733 16.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.074 4.074 3 C -0.173 4.173 4 C -0.143 4.143 5 C -0.088 4.088 6 C -0.202 4.202 7 C 0.067 3.933 8 C -0.151 4.151 9 C -0.069 4.069 10 C -0.236 4.236 11 C -0.079 4.079 12 C -0.248 4.248 13 C 0.130 3.870 14 O -0.059 6.059 15 C -0.466 4.466 16 H 0.122 0.878 17 C -0.136 4.136 18 N -0.511 5.511 19 Si 0.725 3.275 20 H -0.202 1.202 21 H -0.218 1.218 22 H -0.156 1.156 23 N -0.155 5.155 24 C -0.038 4.038 25 H 0.116 0.884 26 H 0.119 0.881 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.145 0.855 31 H 0.150 0.850 32 H 0.135 0.865 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.153 0.847 36 H 0.090 0.910 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.017 5.309 -11.698 15.143 hybrid contribution -0.750 0.663 -0.413 1.083 sum -8.767 5.972 -12.111 16.100 Atomic orbital electron populations 1.24091 0.94586 1.01807 1.02147 1.20390 0.94305 0.93018 0.99736 1.20863 1.00444 0.93838 1.02179 1.19887 1.01890 0.95769 0.96755 1.21405 0.97298 0.92986 0.97142 1.21915 1.00197 0.98330 0.99794 1.19840 0.92144 0.92539 0.88788 1.17619 1.05512 0.95634 0.96322 1.20716 0.97270 0.93027 0.95917 1.20522 1.04441 0.98905 0.99757 1.20918 0.96351 0.97763 0.92828 1.21283 1.05997 0.96138 1.01339 1.19107 0.91583 0.88378 0.87893 1.83852 1.63633 1.37651 1.20739 1.20935 1.29008 1.08113 0.88583 0.87771 1.24485 0.96229 0.99509 0.93414 1.69665 1.39903 1.38676 1.02818 0.86240 0.79198 0.81929 0.80144 1.20192 1.21756 1.15568 1.68025 1.18680 1.02454 1.26313 1.22900 0.91125 0.93401 0.96339 0.88404 0.88052 0.91323 0.91635 0.91491 0.85499 0.85004 0.86530 0.87138 0.87068 0.84702 0.91023 0.83578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.04 13.96 28.84 0.40 -1.64 16 2 C -0.07 -0.91 5.47 -102.65 -0.56 -1.47 16 3 C -0.12 -1.21 10.02 36.01 0.36 -0.85 16 4 C -0.14 -2.13 5.32 -104.81 -0.56 -2.69 16 5 C -0.06 -0.89 9.85 -38.95 -0.38 -1.27 16 6 C -0.18 -2.85 9.44 -39.16 -0.37 -3.22 16 7 C 0.20 3.99 6.73 -82.92 -0.56 3.44 16 8 C -0.15 -3.06 5.89 -104.74 -0.62 -3.67 16 9 C -0.05 -0.85 9.41 -39.25 -0.37 -1.22 16 10 C -0.22 -3.54 10.03 -39.59 -0.40 -3.94 16 11 C -0.06 -1.07 10.03 -39.54 -0.40 -1.46 16 12 C -0.23 -4.92 9.16 -39.44 -0.36 -5.28 16 13 C 0.19 4.41 6.65 -38.70 -0.26 4.15 16 14 O -0.16 -4.21 6.41 0.48 0.00 -4.20 16 15 C -0.39 -11.01 9.95 30.89 0.31 -10.70 16 16 H 0.11 2.98 5.44 -52.48 -0.29 2.69 16 17 C 0.07 1.93 5.49 -17.52 -0.10 1.83 16 18 N -0.87 -25.34 13.96 55.48 0.77 -24.56 16 19 Si 0.90 22.01 28.62 -169.99 -4.86 17.14 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 22 H -0.23 -5.58 6.41 56.52 0.36 -5.22 16 23 N -0.45 -9.66 7.72 -9.47 -0.07 -9.73 16 24 C 0.12 2.24 10.68 -17.16 -0.18 2.06 16 25 H 0.10 1.07 8.05 -52.48 -0.42 0.65 16 26 H 0.10 0.89 8.05 -52.48 -0.42 0.47 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.57 8.07 -51.93 -0.42 0.16 16 29 H 0.07 0.75 8.05 -51.93 -0.42 0.33 16 30 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.13 1.68 6.17 -52.48 -0.32 1.35 16 32 H 0.12 1.58 6.17 -52.49 -0.32 1.25 16 33 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.14 3.02 5.64 -52.49 -0.30 2.72 16 36 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.15 2.54 7.96 -52.49 -0.42 2.13 16 LS Contribution 319.64 15.07 4.82 4.82 Total: -1.00 -30.63 319.64 -7.58 -38.21 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -4.20 Total: 4.29 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: -4.04 Total: -25.95 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: 0.70 Total: -34.30 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: 0.00 Total: -4.20 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.86 Total: 17.14 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.63 -7.58 -38.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585487.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.374 kcal (2) G-P(sol) polarization free energy of solvation -30.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds