Wall clock time and date at job start Tue Mar 31 2020 05:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32650 * 1 3 3 C 1.50700 * 119.99960 * 2 1 4 4 C 1.47710 * 119.99873 * 180.02562 * 2 1 3 5 5 C 1.40133 * 120.45462 * 64.99263 * 4 2 1 6 6 C 1.38031 * 118.39476 * 179.72273 * 5 4 2 7 7 C 1.39560 * 119.21628 * 0.27802 * 6 5 4 8 8 C 1.48097 * 119.57943 * 179.97438 * 7 6 5 9 9 C 1.39392 * 120.17349 * 359.72277 * 8 7 6 10 10 C 1.37965 * 119.93462 * 179.72804 * 9 8 7 11 11 C 1.38477 * 120.28641 * 0.56699 * 10 9 8 12 12 C 1.38098 * 120.34737 * 359.70776 * 11 10 9 13 13 C 1.38771 * 120.05254 * 359.97438 * 12 11 10 14 14 O 1.35634 * 120.13696 * 180.02562 * 13 12 11 15 15 C 1.34805 * 117.00255 * 354.37894 * 14 13 12 16 16 H 1.08005 * 119.99830 * 5.00405 * 15 14 13 17 17 C 1.38657 * 119.99982 * 185.00881 * 15 14 13 18 18 N 1.31554 * 119.99805 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 119.99977 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47112 * 89.99758 * 19 17 15 21 21 H 1.48499 * 109.46946 * 210.00077 * 19 17 15 22 22 H 1.48499 * 109.46940 * 329.99499 * 19 17 15 23 23 N 1.32787 * 120.83696 * 359.97438 * 7 6 5 24 24 C 1.31554 * 121.75365 * 0.02562 * 23 7 6 25 25 H 1.08003 * 120.00200 * 179.97438 * 1 2 3 26 26 H 1.08005 * 120.00222 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47148 * 270.00308 * 3 2 1 28 28 H 1.08998 * 109.47326 * 30.00975 * 3 2 1 29 29 H 1.08998 * 109.46655 * 150.00825 * 3 2 1 30 30 H 1.08001 * 120.79850 * 359.97438 * 5 4 2 31 31 H 1.08004 * 120.39000 * 180.29055 * 6 5 4 32 32 H 1.08000 * 120.02891 * 0.02562 * 9 8 7 33 33 H 1.07996 * 119.85324 * 180.29638 * 10 9 8 34 34 H 1.08000 * 119.82827 * 179.72137 * 11 10 9 35 35 H 1.07999 * 119.97042 * 180.02562 * 12 11 10 36 36 H 0.97005 * 119.99727 * 179.97438 * 18 17 15 37 37 H 1.07999 * 119.65226 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3265 0.0000 0.0000 3 6 2.0800 1.3051 0.0000 4 6 2.0650 -1.2792 -0.0006 5 6 1.9779 -2.1492 -1.0957 6 6 2.6903 -3.3307 -1.0538 7 6 3.4633 -3.6205 0.0715 8 6 4.2305 -4.8861 0.1253 9 6 4.1758 -5.7843 -0.9392 10 6 4.8969 -6.9593 -0.8864 11 6 5.6667 -7.2568 0.2256 12 6 5.7249 -6.3781 1.2893 13 6 5.0105 -5.1891 1.2484 14 8 5.0669 -4.3245 2.2920 15 6 5.7405 -4.7300 3.3870 16 1 6.2727 -5.6698 3.3764 17 6 5.7500 -3.9407 4.5269 18 7 6.4069 -4.3366 5.5957 19 14 4.8299 -2.3150 4.5450 20 1 3.4384 -2.5390 5.0126 21 1 5.5144 -1.3691 5.4626 22 1 4.8058 -1.7447 3.1741 23 7 3.5195 -2.7758 1.0946 24 6 2.8552 -1.6403 1.0922 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5401 0.9353 0.0004 27 1 2.2616 1.6198 -1.0277 28 1 1.4910 2.0647 0.5140 29 1 3.0324 1.1747 0.5137 30 1 1.3712 -1.8993 -1.9535 31 1 2.6503 -4.0226 -1.8821 32 1 3.5732 -5.5584 -1.8066 33 1 4.8573 -7.6520 -1.7140 34 1 6.2247 -8.1808 0.2610 35 1 6.3276 -6.6160 2.1533 36 1 6.4138 -3.7842 6.3931 37 1 2.9252 -0.9786 1.9429 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243585487.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:26 Heat of formation + Delta-G solvation = 39.052219 kcal Electronic energy + Delta-G solvation = -20993.359598 eV Core-core repulsion = 17894.287555 eV Total energy + Delta-G solvation = -3099.072042 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.41793 -40.37431 -38.17921 -36.58386 -34.45777 -33.40376 -32.81494 -30.81715 -29.71586 -28.08511 -27.23239 -25.13813 -24.55203 -22.83917 -22.27131 -20.10472 -19.68515 -19.14608 -17.73850 -17.29777 -16.59271 -16.36246 -15.91366 -15.75555 -15.55829 -15.16674 -15.07124 -14.77334 -14.26630 -14.20028 -14.03807 -13.99743 -13.78701 -13.51686 -13.12300 -12.63482 -12.56003 -12.46284 -12.32877 -11.99387 -11.85628 -11.35147 -10.93079 -10.83146 -10.61467 -10.25010 -9.82133 -9.34030 -8.74382 -8.51265 -6.18102 -0.33358 0.44264 0.70187 0.84118 1.29242 1.30510 1.35163 1.62342 2.34680 2.69629 2.92914 3.14907 3.31862 3.35857 3.70929 3.77839 3.98708 4.15343 4.20273 4.21795 4.28372 4.47297 4.63029 4.67154 4.69435 4.77989 4.85907 4.90851 4.99750 5.08551 5.11605 5.19649 5.23175 5.43183 5.57675 5.62307 5.72691 5.77675 5.82093 5.88500 5.91708 6.24599 6.86032 7.24940 7.69008 8.59362 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012706 B = 0.007368 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.185204 B = 3799.355866 C = 5848.174651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.100 4.100 3 C -0.114 4.114 4 C -0.119 4.119 5 C -0.061 4.061 6 C -0.162 4.162 7 C 0.159 3.841 8 C -0.149 4.149 9 C -0.048 4.048 10 C -0.188 4.188 11 C -0.061 4.061 12 C -0.254 4.254 13 C 0.145 3.855 14 O -0.191 6.191 15 C -0.397 4.397 16 H 0.079 0.921 17 C 0.016 3.984 18 N -0.923 5.923 19 Si 0.960 3.040 20 H -0.280 1.280 21 H -0.281 1.281 22 H -0.233 1.233 23 N -0.493 5.493 24 C 0.088 3.912 25 H 0.097 0.903 26 H 0.127 0.873 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.049 0.951 30 H 0.170 0.830 31 H 0.170 0.830 32 H 0.165 0.835 33 H 0.161 0.839 34 H 0.143 0.857 35 H 0.108 0.892 36 H 0.282 0.718 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.498 5.767 -17.584 21.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.101 4.101 3 C -0.170 4.170 4 C -0.121 4.121 5 C -0.086 4.086 6 C -0.181 4.181 7 C 0.024 3.976 8 C -0.152 4.152 9 C -0.066 4.066 10 C -0.206 4.206 11 C -0.079 4.079 12 C -0.274 4.274 13 C 0.092 3.908 14 O -0.095 6.095 15 C -0.474 4.474 16 H 0.097 0.903 17 C -0.183 4.183 18 N -0.564 5.564 19 Si 0.783 3.217 20 H -0.206 1.206 21 H -0.207 1.207 22 H -0.156 1.156 23 N -0.202 5.202 24 C -0.070 4.070 25 H 0.116 0.884 26 H 0.145 0.855 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.068 0.932 30 H 0.187 0.813 31 H 0.187 0.813 32 H 0.182 0.818 33 H 0.179 0.821 34 H 0.161 0.839 35 H 0.125 0.875 36 H 0.091 0.909 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.996 5.836 -16.604 20.753 hybrid contribution -0.028 0.368 0.655 0.752 sum -11.024 6.204 -15.950 20.357 Atomic orbital electron populations 1.24314 0.93867 1.03089 0.99017 1.20453 0.94902 0.92336 1.02400 1.20861 0.99715 0.93431 1.03024 1.20210 0.99599 0.96772 0.95503 1.21899 0.96927 0.91953 0.97780 1.22247 0.97888 0.99151 0.98809 1.20040 0.94535 0.92603 0.90468 1.18209 1.04171 0.96870 0.95904 1.21284 0.97241 0.92121 0.95980 1.21163 1.01028 0.98789 0.99656 1.21314 0.96598 0.97988 0.92040 1.21316 1.06650 0.97114 1.02293 1.19805 0.93268 0.89249 0.88465 1.83847 1.65761 1.38825 1.21056 1.20853 1.29128 1.07392 0.90003 0.90337 1.25167 0.97436 1.02483 0.93206 1.69741 1.42785 1.40269 1.03591 0.85362 0.77669 0.78729 0.79933 1.20614 1.20671 1.15623 1.67842 1.20154 1.03886 1.28275 1.22973 0.93014 0.93153 0.97886 0.88429 0.85464 0.90073 0.89845 0.93216 0.81291 0.81252 0.81770 0.82124 0.83932 0.87453 0.90866 0.84307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 13.96 66.65 0.93 -1.95 16 2 C -0.10 -2.16 5.47 -18.52 -0.10 -2.26 16 3 C -0.11 -2.08 10.02 71.24 0.71 -1.36 16 4 C -0.12 -3.33 5.32 -19.98 -0.11 -3.44 16 5 C -0.06 -1.45 9.85 22.68 0.22 -1.23 16 6 C -0.16 -4.40 9.44 22.54 0.21 -4.19 16 7 C 0.16 6.13 6.73 41.94 0.28 6.41 16 8 C -0.15 -6.03 5.89 -19.94 -0.12 -6.15 16 9 C -0.05 -1.41 9.41 22.48 0.21 -1.20 16 10 C -0.19 -5.21 10.03 22.26 0.22 -4.99 16 11 C -0.06 -2.06 10.03 22.29 0.22 -1.83 16 12 C -0.25 -11.47 9.16 22.36 0.20 -11.27 16 13 C 0.14 7.13 6.65 22.84 0.15 7.28 16 14 O -0.19 -10.88 6.41 -21.20 -0.14 -11.02 16 15 C -0.40 -24.43 9.95 67.92 0.68 -23.75 16 16 H 0.08 5.03 5.44 -2.91 -0.02 5.01 16 17 C 0.02 0.95 5.49 84.83 0.47 1.41 16 18 N -0.92 -57.60 13.96 21.61 0.30 -57.30 16 19 Si 0.96 48.95 28.62 68.60 1.96 50.91 16 20 H -0.28 -14.17 7.11 99.48 0.71 -13.46 16 21 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 22 H -0.23 -11.74 6.41 99.48 0.64 -11.11 16 23 N -0.49 -21.83 7.72 -183.89 -1.42 -23.25 16 24 C 0.09 3.28 10.68 85.07 0.91 4.19 16 25 H 0.10 1.72 8.05 -2.91 -0.02 1.69 16 26 H 0.13 1.59 8.05 -2.91 -0.02 1.56 16 27 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.08 1.20 8.07 -2.39 -0.02 1.19 16 29 H 0.05 1.07 8.05 -2.39 -0.02 1.05 16 30 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 31 H 0.17 3.19 6.17 -2.91 -0.02 3.17 16 32 H 0.16 3.26 6.17 -2.91 -0.02 3.24 16 33 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 34 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 35 H 0.11 5.33 5.64 -2.91 -0.02 5.32 16 36 H 0.28 16.26 8.31 -92.70 -0.77 15.49 16 37 H 0.14 5.07 7.96 -2.91 -0.02 5.05 16 Total: -1.00 -75.77 319.64 6.83 -68.94 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 1.01 Total: 16.04 kcal Atomic # 6 Polarization: -49.42 SS G_CDS: 5.10 Total: -44.32 kcal Atomic # 7 Polarization: -79.43 SS G_CDS: -1.12 Total: -80.55 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -0.14 Total: -11.02 kcal Atomic # 14 Polarization: 48.95 SS G_CDS: 1.96 Total: 50.91 kcal Total: -75.77 6.83 -68.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585487.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.993 kcal (2) G-P(sol) polarization free energy of solvation -75.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds