Wall clock time and date at job start Tue Mar 31 2020 05:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32646 * 1 3 3 C 1.50705 * 119.99933 * 2 1 4 4 C 1.47702 * 120.00335 * 180.02562 * 2 1 3 5 5 C 1.40131 * 120.45127 * 64.99555 * 4 2 1 6 6 C 1.38040 * 118.39576 * 179.69964 * 5 4 2 7 7 C 1.39543 * 119.21145 * 0.28016 * 6 5 4 8 8 C 1.48147 * 119.57846 * 179.97438 * 7 6 5 9 9 C 1.39535 * 120.05799 * 359.72584 * 8 7 6 10 10 C 1.37797 * 119.93883 * 179.74114 * 9 8 7 11 11 C 1.39039 * 120.05865 * 0.53289 * 10 9 8 12 12 O 1.35663 * 119.93925 * 179.74246 * 11 10 9 13 13 C 1.34819 * 116.99756 * 174.42940 * 12 11 10 14 14 H 1.07999 * 120.00043 * 5.05323 * 13 12 11 15 15 C 1.38654 * 119.99755 * 185.05811 * 13 12 11 16 16 N 1.31553 * 120.00072 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99948 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47056 * 59.99594 * 17 15 13 19 19 H 1.48500 * 109.46935 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46852 * 299.99814 * 17 15 13 21 21 C 1.39036 * 120.11771 * 359.72164 * 11 10 9 22 22 C 1.37797 * 120.06028 * 0.02562 * 21 11 10 23 23 N 1.32766 * 120.84468 * 359.97438 * 7 6 5 24 24 C 1.31559 * 121.75471 * 0.02562 * 23 7 6 25 25 H 1.07994 * 120.00369 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.99839 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47630 * 270.00989 * 3 2 1 28 28 H 1.09002 * 109.46753 * 30.00745 * 3 2 1 29 29 H 1.08998 * 109.47304 * 149.99828 * 3 2 1 30 30 H 1.08000 * 120.80621 * 359.97438 * 5 4 2 31 31 H 1.07993 * 120.39666 * 180.29777 * 6 5 4 32 32 H 1.07994 * 120.03256 * 359.97438 * 9 8 7 33 33 H 1.07994 * 119.96629 * 180.25236 * 10 9 8 34 34 H 0.97006 * 119.99987 * 180.02562 * 16 15 13 35 35 H 1.07997 * 119.97175 * 179.97438 * 21 11 10 36 36 H 1.07998 * 120.03030 * 179.97438 * 22 21 11 37 37 H 1.08002 * 119.64964 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3265 0.0000 0.0000 3 6 2.0800 1.3051 0.0000 4 6 2.0650 -1.2791 -0.0006 5 6 1.9780 -2.1490 -1.0958 6 6 2.6909 -3.3303 -1.0541 7 6 3.4641 -3.6198 0.0709 8 6 4.2320 -4.8856 0.1244 9 6 4.1757 -5.7829 -0.9426 10 6 4.8952 -6.9570 -0.8925 11 6 5.6680 -7.2531 0.2247 12 8 6.3713 -8.4122 0.2737 13 6 7.1898 -8.5872 1.3305 14 1 7.2024 -7.8611 2.1299 15 6 8.0157 -9.6993 1.3911 16 7 8.0001 -10.5840 0.4175 17 14 9.1493 -9.9423 2.8558 18 1 8.3410 -10.0275 4.0985 19 1 9.9216 -11.1986 2.6809 20 1 10.0861 -8.7941 2.9523 21 6 5.7217 -6.3632 1.2916 22 6 5.0083 -5.1852 1.2445 23 7 3.5203 -2.7754 1.0939 24 6 2.8555 -1.6401 1.0919 25 1 -0.5400 0.9352 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 2.2615 1.6200 -1.0276 28 1 1.4909 2.0647 0.5140 29 1 3.0324 1.1749 0.5138 30 1 1.3713 -1.8992 -1.9536 31 1 2.6511 -4.0220 -1.8824 32 1 3.5718 -5.5556 -1.8086 33 1 4.8552 -7.6499 -1.7199 34 1 8.5776 -11.3622 0.4600 35 1 6.3224 -6.5957 2.1585 36 1 5.0500 -4.4945 2.0737 37 1 2.9261 -0.9782 1.9424 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243589179.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:30 Heat of formation + Delta-G solvation = 43.294543 kcal Electronic energy + Delta-G solvation = -19813.668113 eV Core-core repulsion = 16714.780032 eV Total energy + Delta-G solvation = -3098.888081 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.15308 -38.92728 -36.72321 -35.52729 -32.49398 -32.21246 -31.07773 -30.22930 -27.92637 -27.43674 -25.54395 -23.61592 -23.56287 -21.52040 -20.84506 -19.23759 -18.08129 -17.40918 -16.39980 -16.14517 -15.67747 -14.71579 -14.39194 -14.34043 -14.16763 -13.89491 -13.76607 -13.41834 -13.34967 -13.08361 -12.91421 -12.70255 -12.40889 -11.95580 -11.76433 -11.45701 -11.34880 -11.05599 -10.97217 -10.69472 -10.50887 -9.86950 -9.60611 -9.45790 -9.18191 -8.99460 -8.62513 -8.27171 -7.07056 -6.57241 -4.12998 0.84103 1.41271 1.91442 2.20933 2.42881 3.08776 3.10066 3.12590 3.88394 3.94983 4.37528 4.61357 4.62713 4.80100 4.88222 4.97565 5.01869 5.14374 5.21437 5.28613 5.40152 5.47299 5.63327 5.68906 5.71955 5.74528 5.89559 6.04493 6.13384 6.17178 6.38516 6.39935 6.52990 6.57444 6.75945 6.86818 6.98836 7.19302 7.30657 7.34569 7.71134 7.88371 8.21131 8.87808 9.55231 10.59657 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.043474 B = 0.002907 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.904953 B = 9630.000046 C =10131.762853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.077 4.077 3 C -0.116 4.116 4 C -0.142 4.142 5 C -0.057 4.057 6 C -0.182 4.182 7 C 0.212 3.788 8 C -0.169 4.169 9 C -0.047 4.047 10 C -0.198 4.198 11 C 0.166 3.834 12 O -0.166 6.166 13 C -0.392 4.392 14 H 0.096 0.904 15 C 0.041 3.959 16 N -0.856 5.856 17 Si 0.944 3.056 18 H -0.268 1.268 19 H -0.277 1.277 20 H -0.268 1.268 21 C -0.244 4.244 22 C -0.021 4.021 23 N -0.491 5.491 24 C 0.124 3.876 25 H 0.102 0.898 26 H 0.098 0.902 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.129 0.871 31 H 0.136 0.864 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.273 0.727 35 H 0.131 0.869 36 H 0.121 0.879 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.749 17.430 -1.355 20.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.078 4.078 3 C -0.172 4.172 4 C -0.144 4.144 5 C -0.082 4.082 6 C -0.202 4.202 7 C 0.078 3.922 8 C -0.171 4.171 9 C -0.067 4.067 10 C -0.217 4.217 11 C 0.110 3.890 12 O -0.068 6.068 13 C -0.468 4.468 14 H 0.113 0.887 15 C -0.165 4.165 16 N -0.489 5.489 17 Si 0.768 3.232 18 H -0.193 1.193 19 H -0.202 1.202 20 H -0.193 1.193 21 C -0.263 4.263 22 C -0.040 4.040 23 N -0.199 5.199 24 C -0.036 4.036 25 H 0.120 0.880 26 H 0.116 0.884 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.147 0.853 31 H 0.153 0.847 32 H 0.134 0.866 33 H 0.139 0.861 34 H 0.083 0.917 35 H 0.148 0.852 36 H 0.139 0.861 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -10.077 16.748 -0.844 19.564 hybrid contribution -0.027 0.118 -0.013 0.122 sum -10.104 16.866 -0.857 19.679 Atomic orbital electron populations 1.24125 0.94619 1.01934 1.01650 1.20367 0.94295 0.92939 1.00168 1.20856 1.00276 0.93817 1.02291 1.19815 1.02070 0.95865 0.96693 1.21514 0.96765 0.92813 0.97151 1.21990 0.99851 0.98324 1.00063 1.19938 0.91515 0.92372 0.88412 1.17964 1.06564 0.94508 0.98106 1.20689 0.96768 0.92659 0.96556 1.20100 1.03821 0.99267 0.98497 1.19548 0.90661 0.85895 0.92880 1.83937 1.48554 1.30071 1.44202 1.21398 1.17859 1.09308 0.98210 0.88682 1.25359 0.97395 0.94870 0.98847 1.70028 1.36964 1.10709 1.31227 0.85733 0.79418 0.78352 0.79726 1.19311 1.20157 1.19298 1.21151 1.07365 0.96729 1.01086 1.20910 0.92140 0.94879 0.96099 1.67656 1.21051 1.03537 1.27703 1.22770 0.91303 0.93009 0.96474 0.87960 0.88365 0.91289 0.91609 0.91591 0.85313 0.84652 0.86562 0.86057 0.91690 0.85183 0.86074 0.83208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.56 13.96 28.84 0.40 -1.16 16 2 C -0.08 -0.73 5.47 -102.65 -0.56 -1.29 16 3 C -0.12 -0.88 10.02 36.01 0.36 -0.52 16 4 C -0.14 -1.70 5.32 -104.81 -0.56 -2.25 16 5 C -0.06 -0.68 9.85 -38.94 -0.38 -1.07 16 6 C -0.18 -2.51 9.44 -39.17 -0.37 -2.88 16 7 C 0.21 3.52 6.73 -82.91 -0.56 2.96 16 8 C -0.17 -3.14 5.88 -104.86 -0.62 -3.76 16 9 C -0.05 -0.85 9.41 -39.26 -0.37 -1.22 16 10 C -0.20 -4.07 9.98 -39.45 -0.39 -4.47 16 11 C 0.17 3.95 6.65 -38.99 -0.26 3.69 16 12 O -0.17 -4.63 9.75 0.35 0.00 -4.63 16 13 C -0.39 -10.70 9.48 30.89 0.29 -10.41 16 14 H 0.10 2.40 5.19 -52.49 -0.27 2.12 16 15 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 16 N -0.86 -24.46 13.67 55.48 0.76 -23.70 16 17 Si 0.94 20.03 29.55 -169.99 -5.02 15.00 16 18 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 19 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 21 C -0.24 -5.34 9.15 -39.45 -0.36 -5.70 16 22 C -0.02 -0.42 9.56 -39.26 -0.38 -0.79 16 23 N -0.49 -8.03 9.39 -9.47 -0.09 -8.12 16 24 C 0.12 1.65 10.87 -17.16 -0.19 1.47 16 25 H 0.10 0.67 8.05 -52.49 -0.42 0.25 16 26 H 0.10 0.85 8.05 -52.49 -0.42 0.43 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.40 8.07 -51.93 -0.42 -0.02 16 29 H 0.07 0.51 8.05 -51.93 -0.42 0.10 16 30 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 31 H 0.14 1.61 6.16 -52.49 -0.32 1.28 16 32 H 0.12 1.66 6.16 -52.49 -0.32 1.34 16 33 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 34 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.13 2.81 5.62 -52.49 -0.30 2.52 16 36 H 0.12 2.23 7.52 -52.49 -0.39 1.83 16 37 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 324.46 15.07 4.89 4.89 Total: -1.00 -30.22 324.46 -7.61 -37.83 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -4.12 Total: 5.11 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: -4.03 Total: -26.39 kcal Atomic # 7 Polarization: -32.49 SS G_CDS: 0.67 Total: -31.82 kcal Atomic # 8 Polarization: -4.63 SS G_CDS: 0.00 Total: -4.63 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.22 -7.61 -37.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243589179.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.128 kcal (2) G-P(sol) polarization free energy of solvation -30.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds