Wall clock time and date at job start Tue Mar 31 2020 05:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32555 * 1 3 3 C 1.50693 * 120.00061 * 2 1 4 4 C 1.47834 * 119.99742 * 179.97438 * 2 1 3 5 5 C 1.39612 * 120.49864 * 115.00065 * 4 2 1 6 6 N 1.31714 * 120.84271 * 179.97438 * 5 4 2 7 7 C 1.31774 * 122.01382 * 0.02562 * 6 5 4 8 8 C 1.39428 * 120.90076 * 359.97438 * 7 6 5 9 9 C 1.48348 * 120.46902 * 180.02562 * 8 7 6 10 10 C 1.39429 * 120.04696 * 179.72649 * 9 8 7 11 11 C 1.37840 * 119.94279 * 179.69452 * 10 9 8 12 12 C 1.39000 * 120.05492 * 0.59594 * 11 10 9 13 13 O 1.35701 * 119.94998 * 179.70184 * 12 11 10 14 14 C 1.34810 * 116.99909 * 174.43155 * 13 12 11 15 15 H 1.08001 * 120.00297 * 5.05958 * 14 13 12 16 16 C 1.38646 * 120.00037 * 185.05347 * 14 13 12 17 17 N 1.31557 * 120.00002 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99856 * 0.02562 * 16 14 13 19 19 H 1.48491 * 109.47192 * 90.00147 * 18 16 14 20 20 H 1.48507 * 109.47227 * 210.00153 * 18 16 14 21 21 H 1.48503 * 109.47322 * 329.99735 * 18 16 14 22 22 C 1.38999 * 120.09926 * 359.67734 * 12 11 10 23 23 C 1.37839 * 120.05042 * 0.02562 * 22 12 11 24 24 C 1.39560 * 119.05671 * 359.72674 * 8 7 6 25 25 H 1.08000 * 120.00148 * 179.97438 * 1 2 3 26 26 H 1.08000 * 119.99953 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47191 * 269.99554 * 3 2 1 28 28 H 1.08996 * 109.47279 * 30.00030 * 3 2 1 29 29 H 1.08997 * 109.47185 * 150.00240 * 3 2 1 30 30 H 1.08007 * 119.57432 * 0.02661 * 5 4 2 31 31 H 1.07998 * 119.55132 * 180.02562 * 7 6 5 32 32 H 1.08002 * 120.03025 * 359.97438 * 10 9 8 33 33 H 1.08006 * 119.97178 * 180.27566 * 11 10 9 34 34 H 0.97001 * 120.00094 * 180.02562 * 17 16 14 35 35 H 1.08002 * 119.97338 * 179.97438 * 22 12 11 36 36 H 1.08004 * 120.02044 * 180.02562 * 23 22 12 37 37 H 1.07997 * 120.91089 * 180.30139 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3255 0.0000 0.0000 3 6 2.0790 1.3050 0.0000 4 6 2.0647 -1.2803 0.0006 5 6 2.8592 -1.6403 -1.0895 6 7 3.5210 -2.7791 -1.0960 7 6 3.4662 -3.6246 -0.0867 8 6 2.6968 -3.3438 1.0416 9 6 2.6425 -4.3023 2.1726 10 6 1.8747 -4.0101 3.2992 11 6 1.8208 -4.9051 4.3461 12 6 2.5408 -6.0925 4.2846 13 8 2.4909 -6.9693 5.3191 14 6 3.1169 -8.1512 5.1503 15 1 3.6960 -8.3329 4.2569 16 6 3.0176 -9.1336 6.1237 17 7 3.6290 -10.2868 5.9592 18 14 2.0157 -8.8196 7.6686 19 1 0.6121 -9.2493 7.4443 20 1 2.5944 -9.5895 8.7990 21 1 2.0441 -7.3703 7.9911 22 6 3.3113 -6.3833 3.1649 23 6 3.3635 -5.4942 2.1130 24 6 1.9836 -2.1454 1.0947 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 2.2608 1.6197 -1.0277 28 1 1.4900 2.0647 0.5138 29 1 3.0314 1.1747 0.5138 30 1 2.9328 -0.9760 -1.9380 31 1 4.0255 -4.5472 -0.1339 32 1 1.3192 -3.0853 3.3496 33 1 1.2227 -4.6812 5.2171 34 1 3.5592 -10.9742 6.6400 35 1 3.8703 -7.3064 3.1195 36 1 3.9621 -5.7208 1.2430 37 1 1.3821 -1.8955 1.9561 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243591025.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:33 Heat of formation + Delta-G solvation = 43.970907 kcal Electronic energy + Delta-G solvation = -19980.773803 eV Core-core repulsion = 16881.915051 eV Total energy + Delta-G solvation = -3098.858752 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.27231 -39.15147 -36.90074 -35.77044 -32.87771 -32.31640 -30.98052 -30.16319 -28.20385 -27.43860 -25.49650 -24.11740 -23.32225 -21.78461 -20.88660 -18.94811 -18.06267 -17.66462 -16.82760 -16.17293 -15.84208 -14.94488 -14.60871 -14.38326 -14.07593 -13.95636 -13.90432 -13.41492 -13.39801 -13.35424 -12.74804 -12.50345 -12.40009 -12.32461 -12.01783 -11.78221 -11.69554 -11.08917 -10.98861 -10.80744 -10.28776 -9.89965 -9.64954 -9.53065 -9.28732 -8.98836 -8.75161 -8.45571 -7.22499 -6.56062 -4.20914 0.83235 1.18167 1.94429 2.00261 2.33614 3.13871 3.17774 3.31291 3.84770 4.12038 4.33670 4.45913 4.59146 4.65731 4.78500 4.94269 4.97552 4.99462 5.03243 5.23191 5.28472 5.36151 5.42515 5.56239 5.67205 5.70148 5.76730 5.96874 5.99057 6.11367 6.24788 6.30841 6.43095 6.49326 6.63004 6.69950 6.93706 7.06521 7.13071 7.42456 7.65011 7.87838 8.04347 8.77802 9.37903 10.50623 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.034507 B = 0.003235 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.232674 B = 8653.796330 C = 9316.901206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.085 4.085 3 C -0.115 4.115 4 C -0.098 4.098 5 C 0.084 3.916 6 N -0.476 5.476 7 C 0.085 3.915 8 C -0.045 4.045 9 C -0.153 4.153 10 C -0.057 4.057 11 C -0.192 4.192 12 C 0.167 3.833 13 O -0.207 6.207 14 C -0.391 4.391 15 H 0.110 0.890 16 C 0.065 3.935 17 N -0.871 5.871 18 Si 0.906 3.094 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.258 1.258 22 C -0.221 4.221 23 C -0.051 4.051 24 C -0.080 4.080 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.150 0.850 31 H 0.156 0.844 32 H 0.116 0.884 33 H 0.121 0.879 34 H 0.282 0.718 35 H 0.138 0.862 36 H 0.116 0.884 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.124 17.826 -9.423 20.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.086 4.086 3 C -0.171 4.171 4 C -0.100 4.100 5 C -0.074 4.074 6 N -0.183 5.183 7 C -0.072 4.072 8 C -0.047 4.047 9 C -0.155 4.155 10 C -0.075 4.075 11 C -0.211 4.211 12 C 0.114 3.886 13 O -0.110 6.110 14 C -0.466 4.466 15 H 0.127 0.873 16 C -0.139 4.139 17 N -0.507 5.507 18 Si 0.731 3.269 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.182 1.182 22 C -0.241 4.241 23 C -0.070 4.070 24 C -0.105 4.105 25 H 0.118 0.882 26 H 0.123 0.877 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.167 0.833 31 H 0.173 0.827 32 H 0.134 0.866 33 H 0.139 0.861 34 H 0.092 0.908 35 H 0.155 0.845 36 H 0.134 0.866 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.643 17.363 -9.813 20.274 hybrid contribution -0.828 0.021 1.355 1.588 sum -4.471 17.384 -8.458 19.842 Atomic orbital electron populations 1.24151 0.94590 1.02185 1.00688 1.20395 0.94405 0.92895 1.00896 1.20828 1.00326 0.93674 1.02294 1.19850 0.99398 0.95078 0.95716 1.22717 0.93662 0.93884 0.97108 1.67517 1.19778 1.03291 1.27731 1.22896 0.97099 0.98540 0.88686 1.19752 0.96122 0.93954 0.94899 1.18111 1.06260 0.96228 0.94902 1.20675 0.96921 0.97703 0.92214 1.20140 1.05446 0.94651 1.00906 1.19244 0.92615 0.89845 0.86937 1.83550 1.66814 1.25550 1.35134 1.20833 1.29497 0.87678 1.08619 0.87311 1.24509 0.96749 0.93723 0.98956 1.69640 1.40961 1.04467 1.35669 0.86165 0.80010 0.79663 0.81021 1.19704 1.20590 1.18248 1.21226 1.05379 1.02472 0.94975 1.20859 0.96373 0.92352 0.97377 1.21719 0.98313 0.92716 0.97753 0.88195 0.87744 0.91185 0.91453 0.91648 0.83318 0.82668 0.86590 0.86125 0.90764 0.84475 0.86621 0.84834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 13.96 28.82 0.40 -1.13 16 2 C -0.09 -0.81 5.47 -102.61 -0.56 -1.37 16 3 C -0.11 -0.85 10.02 36.00 0.36 -0.49 16 4 C -0.10 -1.17 5.31 -104.91 -0.56 -1.73 16 5 C 0.08 1.04 10.93 -17.09 -0.19 0.85 16 6 N -0.48 -6.85 10.33 -12.64 -0.13 -6.98 16 7 C 0.09 1.23 10.59 -17.13 -0.18 1.05 16 8 C -0.05 -0.67 5.89 -104.80 -0.62 -1.28 16 9 C -0.15 -2.53 5.88 -104.85 -0.62 -3.14 16 10 C -0.06 -0.93 9.43 -39.28 -0.37 -1.30 16 11 C -0.19 -3.60 9.98 -39.44 -0.39 -4.00 16 12 C 0.17 3.67 6.65 -39.02 -0.26 3.41 16 13 O -0.21 -5.21 8.58 0.26 0.00 -5.21 16 14 C -0.39 -10.58 9.94 30.88 0.31 -10.27 16 15 H 0.11 2.99 5.42 -52.49 -0.28 2.71 16 16 C 0.07 1.76 5.49 -17.52 -0.10 1.67 16 17 N -0.87 -24.32 13.96 55.48 0.77 -23.54 16 18 Si 0.91 20.84 28.62 -169.99 -4.86 15.98 16 19 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.26 -5.95 7.11 56.52 0.40 -5.55 16 22 C -0.22 -4.53 9.15 -39.45 -0.36 -4.89 16 23 C -0.05 -0.89 9.43 -39.29 -0.37 -1.26 16 24 C -0.08 -1.04 9.23 -38.54 -0.36 -1.40 16 25 H 0.10 0.90 8.05 -52.49 -0.42 0.48 16 26 H 0.10 0.70 8.05 -52.49 -0.42 0.27 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.42 8.07 -51.93 -0.42 0.00 16 29 H 0.06 0.52 8.11 -51.93 -0.42 0.10 16 30 H 0.15 1.48 8.06 -52.48 -0.42 1.05 16 31 H 0.16 2.02 6.20 -52.49 -0.33 1.69 16 32 H 0.12 1.54 6.26 -52.49 -0.33 1.21 16 33 H 0.12 2.08 8.06 -52.48 -0.42 1.65 16 34 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.14 2.93 5.62 -52.49 -0.30 2.63 16 36 H 0.12 1.69 6.22 -52.48 -0.33 1.37 16 37 H 0.13 1.56 6.31 -52.49 -0.33 1.23 16 LS Contribution 321.05 15.07 4.84 4.84 Total: -1.00 -28.76 321.05 -7.22 -35.98 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -3.98 Total: 4.23 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: -3.86 Total: -25.28 kcal Atomic # 7 Polarization: -31.17 SS G_CDS: 0.64 Total: -30.52 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: 0.00 Total: -5.21 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.86 Total: 15.98 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.76 -7.22 -35.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243591025.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.948 kcal (2) G-P(sol) polarization free energy of solvation -28.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds