Wall clock time and date at job start Tue Mar 31 2020 05:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32555 * 1 3 3 C 1.50693 * 120.00061 * 2 1 4 4 C 1.47834 * 119.99742 * 179.97438 * 2 1 3 5 5 C 1.39612 * 120.49864 * 115.00065 * 4 2 1 6 6 N 1.31714 * 120.84271 * 179.97438 * 5 4 2 7 7 C 1.31774 * 122.01382 * 0.02562 * 6 5 4 8 8 C 1.39428 * 120.90076 * 359.97438 * 7 6 5 9 9 C 1.48348 * 120.46902 * 180.02562 * 8 7 6 10 10 C 1.39429 * 120.04696 * 179.72649 * 9 8 7 11 11 C 1.37840 * 119.94279 * 179.69452 * 10 9 8 12 12 C 1.39000 * 120.05492 * 0.59594 * 11 10 9 13 13 O 1.35701 * 119.94998 * 179.70184 * 12 11 10 14 14 C 1.34810 * 116.99909 * 174.43155 * 13 12 11 15 15 H 1.08001 * 120.00297 * 5.05958 * 14 13 12 16 16 C 1.38646 * 120.00037 * 185.05347 * 14 13 12 17 17 N 1.31557 * 120.00002 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99856 * 0.02562 * 16 14 13 19 19 H 1.48491 * 109.47192 * 90.00147 * 18 16 14 20 20 H 1.48507 * 109.47227 * 210.00153 * 18 16 14 21 21 H 1.48503 * 109.47322 * 329.99735 * 18 16 14 22 22 C 1.38999 * 120.09926 * 359.67734 * 12 11 10 23 23 C 1.37839 * 120.05042 * 0.02562 * 22 12 11 24 24 C 1.39560 * 119.05671 * 359.72674 * 8 7 6 25 25 H 1.08000 * 120.00148 * 179.97438 * 1 2 3 26 26 H 1.08000 * 119.99953 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47191 * 269.99554 * 3 2 1 28 28 H 1.08996 * 109.47279 * 30.00030 * 3 2 1 29 29 H 1.08997 * 109.47185 * 150.00240 * 3 2 1 30 30 H 1.08007 * 119.57432 * 0.02661 * 5 4 2 31 31 H 1.07998 * 119.55132 * 180.02562 * 7 6 5 32 32 H 1.08002 * 120.03025 * 359.97438 * 10 9 8 33 33 H 1.08006 * 119.97178 * 180.27566 * 11 10 9 34 34 H 0.97001 * 120.00094 * 180.02562 * 17 16 14 35 35 H 1.08002 * 119.97338 * 179.97438 * 22 12 11 36 36 H 1.08004 * 120.02044 * 180.02562 * 23 22 12 37 37 H 1.07997 * 120.91089 * 180.30139 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3255 0.0000 0.0000 3 6 2.0790 1.3050 0.0000 4 6 2.0647 -1.2803 0.0006 5 6 2.8592 -1.6403 -1.0895 6 7 3.5210 -2.7791 -1.0960 7 6 3.4662 -3.6246 -0.0867 8 6 2.6968 -3.3438 1.0416 9 6 2.6425 -4.3023 2.1726 10 6 1.8747 -4.0101 3.2992 11 6 1.8208 -4.9051 4.3461 12 6 2.5408 -6.0925 4.2846 13 8 2.4909 -6.9693 5.3191 14 6 3.1169 -8.1512 5.1503 15 1 3.6960 -8.3329 4.2569 16 6 3.0176 -9.1336 6.1237 17 7 3.6290 -10.2868 5.9592 18 14 2.0157 -8.8196 7.6686 19 1 0.6121 -9.2493 7.4443 20 1 2.5944 -9.5895 8.7990 21 1 2.0441 -7.3703 7.9911 22 6 3.3113 -6.3833 3.1649 23 6 3.3635 -5.4942 2.1130 24 6 1.9836 -2.1454 1.0947 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 2.2608 1.6197 -1.0277 28 1 1.4900 2.0647 0.5138 29 1 3.0314 1.1747 0.5138 30 1 2.9328 -0.9760 -1.9380 31 1 4.0255 -4.5472 -0.1339 32 1 1.3192 -3.0853 3.3496 33 1 1.2227 -4.6812 5.2171 34 1 3.5592 -10.9742 6.6400 35 1 3.8703 -7.3064 3.1195 36 1 3.9621 -5.7208 1.2430 37 1 1.3821 -1.8955 1.9561 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243591025.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:33 Heat of formation + Delta-G solvation = 29.111511 kcal Electronic energy + Delta-G solvation = -19981.418155 eV Core-core repulsion = 16881.915051 eV Total energy + Delta-G solvation = -3099.503104 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.44074 -40.67542 -38.42234 -36.57689 -34.59895 -33.78578 -32.25597 -31.35276 -29.59289 -28.05038 -27.29199 -25.24544 -24.58122 -23.16364 -22.28516 -19.89886 -19.81081 -19.23831 -18.00872 -17.34317 -16.95895 -16.46630 -15.80208 -15.77153 -15.60859 -15.39552 -15.22210 -14.65352 -14.30288 -14.25996 -14.10621 -13.95425 -13.83592 -13.43264 -13.27265 -13.06102 -12.69596 -12.55984 -12.45237 -12.09504 -11.97847 -11.34652 -11.13426 -10.78826 -10.58800 -10.28920 -9.92686 -9.70795 -8.72765 -8.53046 -6.25176 -0.32782 0.15450 0.50243 0.92924 1.26572 1.31885 1.36267 1.51804 2.26339 2.62123 2.88296 3.02262 3.18105 3.37802 3.66395 3.75630 3.90060 3.97778 3.98678 4.10102 4.22745 4.41784 4.46908 4.59248 4.68081 4.74538 4.82923 4.86762 5.01755 5.10200 5.11515 5.17087 5.19181 5.29884 5.48369 5.61141 5.65322 5.72511 5.77449 5.82719 5.85271 6.12902 6.80562 6.98645 7.51987 8.58072 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.034507 B = 0.003235 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.232674 B = 8653.796330 C = 9316.901206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.100 4.100 3 C -0.112 4.112 4 C -0.095 4.095 5 C 0.088 3.912 6 N -0.496 5.496 7 C 0.079 3.921 8 C -0.068 4.068 9 C -0.127 4.127 10 C -0.053 4.053 11 C -0.187 4.187 12 C 0.130 3.870 13 O -0.237 6.237 14 C -0.402 4.402 15 H 0.084 0.916 16 C 0.012 3.988 17 N -0.920 5.920 18 Si 0.971 3.029 19 H -0.265 1.265 20 H -0.268 1.268 21 H -0.260 1.260 22 C -0.234 4.234 23 C -0.057 4.057 24 C -0.075 4.075 25 H 0.093 0.907 26 H 0.127 0.873 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.175 0.825 31 H 0.161 0.839 32 H 0.157 0.843 33 H 0.137 0.863 34 H 0.286 0.714 35 H 0.115 0.885 36 H 0.140 0.860 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.841 21.940 -10.596 25.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.101 4.101 3 C -0.169 4.169 4 C -0.097 4.097 5 C -0.069 4.069 6 N -0.204 5.204 7 C -0.077 4.077 8 C -0.070 4.070 9 C -0.128 4.128 10 C -0.070 4.070 11 C -0.206 4.206 12 C 0.080 3.920 13 O -0.143 6.143 14 C -0.478 4.478 15 H 0.101 0.899 16 C -0.187 4.187 17 N -0.560 5.560 18 Si 0.793 3.207 19 H -0.190 1.190 20 H -0.193 1.193 21 H -0.184 1.184 22 C -0.253 4.253 23 C -0.075 4.075 24 C -0.100 4.100 25 H 0.112 0.888 26 H 0.145 0.855 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.076 0.924 30 H 0.192 0.808 31 H 0.178 0.822 32 H 0.175 0.825 33 H 0.155 0.845 34 H 0.096 0.904 35 H 0.133 0.867 36 H 0.158 0.842 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -5.361 21.521 -11.025 24.768 hybrid contribution -0.333 -0.797 1.256 1.525 sum -5.694 20.724 -9.769 23.608 Atomic orbital electron populations 1.24332 0.94290 1.03030 0.98824 1.20457 0.94704 0.92444 1.02503 1.20844 0.99896 0.92934 1.03199 1.20107 0.98861 0.95851 0.94843 1.23258 0.92385 0.93299 0.97949 1.67574 1.20775 1.04167 1.27860 1.23044 0.97003 0.98944 0.88736 1.19647 0.98163 0.94669 0.94567 1.18436 1.03671 0.95459 0.95248 1.21098 0.96499 0.98500 0.90930 1.20462 1.04503 0.93483 1.02171 1.19789 0.94283 0.90739 0.87227 1.83503 1.68672 1.25438 1.36723 1.20740 1.29820 0.89093 1.08157 0.89854 1.25301 0.98002 0.93450 1.01974 1.69726 1.43509 1.05581 1.37174 0.85215 0.78686 0.79277 0.77562 1.19001 1.19276 1.18448 1.21230 1.05552 1.02542 0.96001 1.21103 0.96904 0.92268 0.97240 1.21979 0.97450 0.91941 0.98623 0.88813 0.85535 0.90025 0.90003 0.92436 0.80822 0.82151 0.82548 0.84483 0.90442 0.86717 0.84223 0.83127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 13.96 66.67 0.93 -1.20 16 2 C -0.10 -1.48 5.47 -18.47 -0.10 -1.58 16 3 C -0.11 -1.21 10.02 71.23 0.71 -0.49 16 4 C -0.09 -1.89 5.31 -20.05 -0.11 -2.00 16 5 C 0.09 1.90 10.93 85.04 0.93 2.83 16 6 N -0.50 -13.04 10.33 -193.91 -2.00 -15.04 16 7 C 0.08 2.12 10.59 84.99 0.90 3.02 16 8 C -0.07 -1.82 5.89 -19.98 -0.12 -1.94 16 9 C -0.13 -3.90 5.88 -20.01 -0.12 -4.02 16 10 C -0.05 -1.56 9.43 22.46 0.21 -1.35 16 11 C -0.19 -6.79 9.98 22.36 0.22 -6.56 16 12 C 0.13 5.85 6.65 22.64 0.15 6.00 16 13 O -0.24 -12.47 8.58 -21.99 -0.19 -12.66 16 14 C -0.40 -23.18 9.94 67.92 0.68 -22.51 16 15 H 0.08 5.03 5.42 -2.91 -0.02 5.01 16 16 C 0.01 0.67 5.49 84.83 0.47 1.13 16 17 N -0.92 -54.18 13.96 21.61 0.30 -53.87 16 18 Si 0.97 44.36 28.62 68.60 1.96 46.32 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 21 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 22 C -0.23 -10.01 9.15 22.36 0.20 -9.80 16 23 C -0.06 -1.97 9.43 22.46 0.21 -1.76 16 24 C -0.07 -1.67 9.23 22.95 0.21 -1.45 16 25 H 0.09 1.32 8.05 -2.91 -0.02 1.29 16 26 H 0.13 1.07 8.05 -2.91 -0.02 1.04 16 27 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.08 0.66 8.07 -2.39 -0.02 0.64 16 29 H 0.06 0.71 8.11 -2.39 -0.02 0.69 16 30 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16 31 H 0.16 3.94 6.20 -2.91 -0.02 3.92 16 32 H 0.16 3.38 6.26 -2.91 -0.02 3.36 16 33 H 0.14 4.47 8.06 -2.91 -0.02 4.44 16 34 H 0.29 15.42 8.31 -92.71 -0.77 14.65 16 35 H 0.12 5.37 5.62 -2.91 -0.02 5.35 16 36 H 0.14 4.02 6.22 -2.91 -0.02 4.00 16 37 H 0.15 2.79 6.31 -2.91 -0.02 2.77 16 Total: -1.00 -65.72 321.05 6.55 -59.17 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 1.09 Total: 17.77 kcal Atomic # 6 Polarization: -47.07 SS G_CDS: 5.39 Total: -41.68 kcal Atomic # 7 Polarization: -67.21 SS G_CDS: -1.70 Total: -68.92 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -0.19 Total: -12.66 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.96 Total: 46.32 kcal Total: -65.72 6.55 -59.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243591025.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.283 kcal (2) G-P(sol) polarization free energy of solvation -65.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds