Wall clock time and date at job start Tue Mar 31 2020 05:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86803 * 120.00042 * 2 1 4 4 H 1.48501 * 109.47213 * 270.00407 * 3 2 1 5 5 H 1.48506 * 109.46746 * 30.00031 * 3 2 1 6 6 H 1.48493 * 109.47144 * 149.99822 * 3 2 1 7 7 C 1.38661 * 120.00102 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99821 * 359.97438 * 7 2 1 9 9 O 1.34817 * 119.99985 * 180.02562 * 7 2 1 10 10 C 1.35675 * 117.00039 * 174.94104 * 9 7 2 11 11 C 1.39022 * 119.94435 * 5.55840 * 10 9 7 12 12 C 1.37814 * 120.05294 * 180.02562 * 11 10 9 13 13 C 1.39468 * 119.94634 * 359.97438 * 12 11 10 14 14 C 1.48255 * 120.05446 * 180.02562 * 13 12 11 15 15 N 1.32723 * 119.73331 * 224.57123 * 14 13 12 16 16 C 1.31741 * 121.60344 * 180.28783 * 15 14 13 17 17 C 1.38278 * 120.89815 * 359.69096 * 16 15 14 18 18 C 1.38762 * 119.37735 * 0.02562 * 17 16 15 19 19 C 1.38415 * 118.51674 * 359.97438 * 18 17 16 20 20 C 1.50699 * 120.46404 * 179.97438 * 19 18 17 21 21 C 1.52996 * 117.52345 * 346.52967 * 20 19 18 22 22 C 1.52992 * 117.50279 * 55.16441 * 20 19 18 23 23 C 1.39477 * 119.89081 * 0.28138 * 13 12 11 24 24 C 1.37814 * 119.94328 * 359.42048 * 23 13 12 25 25 H 0.97002 * 120.00130 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.97273 * 359.97219 * 11 10 9 27 27 H 1.07996 * 120.02492 * 180.02562 * 12 11 10 28 28 H 1.08000 * 119.54493 * 179.71196 * 16 15 14 29 29 H 1.08001 * 120.30914 * 180.02562 * 17 16 15 30 30 H 1.08005 * 120.74388 * 179.97438 * 18 17 16 31 31 H 1.09001 * 115.54744 * 200.82945 * 20 19 18 32 32 H 1.08995 * 117.50418 * 214.97049 * 21 20 19 33 33 H 1.09000 * 117.49441 * 359.97438 * 21 20 19 34 34 H 1.09005 * 117.49438 * 359.97438 * 22 20 19 35 35 H 1.08996 * 117.50236 * 144.99160 * 22 20 19 36 36 H 1.08004 * 120.02818 * 179.72213 * 23 13 12 37 37 H 1.08004 * 119.97101 * 180.30053 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4469 2.6527 0.7001 6 1 3.5470 1.4402 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4688 -2.1361 -0.0005 9 8 3.3570 -1.2008 0.0000 10 6 3.9729 -2.4050 0.1060 11 6 3.2197 -3.5734 0.0912 12 6 3.8430 -4.7978 0.1993 13 6 5.2306 -4.8641 0.3231 14 6 5.9036 -6.1800 0.4389 15 7 6.8604 -6.3527 1.3424 16 6 7.4866 -7.5044 1.4733 17 6 7.1624 -8.5840 0.6724 18 6 6.1638 -8.4483 -0.2815 19 6 5.5223 -7.2273 -0.3976 20 6 4.4318 -7.0312 -1.4190 21 6 4.2832 -8.0956 -2.5079 22 6 3.2488 -8.0007 -1.3846 23 6 5.9836 -3.6902 0.3430 24 6 5.3562 -2.4685 0.2284 25 1 -0.4850 0.8401 0.0004 26 1 2.1452 -3.5215 -0.0042 27 1 3.2575 -5.7052 0.1874 28 1 8.2634 -7.6067 2.2166 29 1 7.6816 -9.5239 0.7881 30 1 5.8930 -9.2769 -0.9191 31 1 4.2268 -5.9968 -1.6951 32 1 3.9806 -7.7617 -3.5003 33 1 4.9747 -8.9379 -2.4858 34 1 3.2595 -8.7808 -0.6233 35 1 2.2656 -7.6043 -1.6379 36 1 7.0579 -3.7388 0.4433 37 1 5.9393 -1.5595 0.2389 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243593136.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:38 Heat of formation + Delta-G solvation = 59.363210 kcal Electronic energy + Delta-G solvation = -20636.662158 eV Core-core repulsion = 17538.470866 eV Total energy + Delta-G solvation = -3098.191292 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.49697 -39.03837 -37.19554 -36.61765 -32.63363 -32.16973 -31.50720 -30.32092 -28.34498 -25.46229 -24.61962 -23.26579 -22.47604 -21.86265 -20.67385 -20.54582 -17.95491 -17.52692 -17.11564 -16.29521 -15.69174 -14.88683 -14.81111 -14.35650 -14.01911 -13.90999 -13.86399 -13.62504 -13.46466 -12.75500 -12.58161 -12.33773 -12.27272 -11.76458 -11.60664 -11.42764 -11.16812 -10.91362 -10.80634 -10.73644 -10.52194 -10.19876 -9.66176 -9.45891 -9.29595 -8.97801 -8.63778 -8.31093 -7.27040 -6.49149 -4.14787 1.00361 1.28715 2.11191 2.22928 3.19382 3.22078 3.36887 3.64965 4.05834 4.18243 4.30863 4.48276 4.60538 4.73668 4.78212 4.82125 4.92739 4.99517 5.05210 5.12092 5.29852 5.52553 5.54215 5.64656 5.71185 5.74917 5.84587 5.97485 6.01521 6.07660 6.09496 6.25970 6.39908 6.49120 6.67413 6.74857 7.04985 7.15621 7.21328 7.51899 7.72786 7.95580 8.14047 8.85430 9.46767 10.57833 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.025741 B = 0.004117 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.505856 B = 6799.059441 C = 7591.450197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.258 1.258 7 C -0.391 4.391 8 H 0.109 0.891 9 O -0.210 6.210 10 C 0.171 3.829 11 C -0.227 4.227 12 C -0.046 4.046 13 C -0.149 4.149 14 C 0.206 3.794 15 N -0.480 5.480 16 C 0.095 3.905 17 C -0.189 4.189 18 C -0.078 4.078 19 C -0.098 4.098 20 C -0.113 4.113 21 C -0.179 4.179 22 C -0.170 4.170 23 C -0.035 4.035 24 C -0.198 4.198 25 H 0.281 0.719 26 H 0.137 0.863 27 H 0.116 0.884 28 H 0.152 0.848 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.117 0.883 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.499 -15.730 -1.889 19.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.139 4.139 3 Si 0.730 3.270 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.182 1.182 7 C -0.466 4.466 8 H 0.126 0.874 9 O -0.114 6.114 10 C 0.117 3.883 11 C -0.246 4.246 12 C -0.065 4.065 13 C -0.150 4.150 14 C 0.070 3.930 15 N -0.188 5.188 16 C -0.063 4.063 17 C -0.209 4.209 18 C -0.103 4.103 19 C -0.100 4.100 20 C -0.131 4.131 21 C -0.215 4.215 22 C -0.207 4.207 23 C -0.054 4.054 24 C -0.217 4.217 25 H 0.091 0.909 26 H 0.154 0.846 27 H 0.134 0.866 28 H 0.169 0.831 29 H 0.147 0.853 30 H 0.148 0.852 31 H 0.145 0.855 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.119 0.881 36 H 0.135 0.865 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.599 -14.653 -1.353 18.135 hybrid contribution -0.062 -0.189 -0.478 0.518 sum 10.537 -14.842 -1.831 18.294 Atomic orbital electron populations 1.69639 1.05617 1.28690 1.47213 1.24490 0.95041 0.98933 0.95434 0.86180 0.80409 0.81305 0.79060 1.19779 1.20705 1.18220 1.20815 0.76785 0.96762 1.52232 0.87407 1.83550 1.22764 1.25954 1.79145 1.19249 0.91689 0.85420 0.91921 1.21177 1.01195 0.91488 1.10718 1.20882 0.92676 0.97092 0.95805 1.17917 0.92841 0.89991 1.14284 1.19732 0.90962 0.92801 0.89502 1.67859 1.07652 1.24511 1.18758 1.22692 0.97595 0.88387 0.97601 1.22025 0.99918 1.00527 0.98431 1.21338 0.94932 0.96845 0.97231 1.20070 0.98185 0.94062 0.97697 1.21153 0.96338 0.97795 0.97839 1.23066 1.02742 1.01086 0.94655 1.23050 0.94422 1.01821 1.01358 1.20640 0.98694 0.90541 0.95510 1.20151 0.91882 0.97855 1.11802 0.90897 0.84570 0.86574 0.83102 0.85286 0.85234 0.85468 0.88317 0.88838 0.88832 0.88061 0.86460 0.86176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.73 13.96 55.48 0.77 -23.96 16 2 C 0.07 1.79 5.49 -17.52 -0.10 1.69 16 3 Si 0.91 21.26 28.62 -169.99 -4.86 16.39 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.26 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.39 -10.74 9.94 30.89 0.31 -10.43 16 8 H 0.11 3.01 5.42 -52.48 -0.28 2.73 16 9 O -0.21 -5.43 8.58 0.32 0.00 -5.42 16 10 C 0.17 3.87 6.65 -39.00 -0.26 3.61 16 11 C -0.23 -4.75 9.15 -39.45 -0.36 -5.11 16 12 C -0.05 -0.82 7.52 -39.28 -0.30 -1.12 16 13 C -0.15 -2.65 5.19 -104.86 -0.54 -3.19 16 14 C 0.21 3.33 6.36 -82.95 -0.53 2.80 16 15 N -0.48 -7.59 10.16 -9.79 -0.10 -7.69 16 16 C 0.10 1.17 11.17 -17.58 -0.20 0.97 16 17 C -0.19 -2.00 10.11 -39.37 -0.40 -2.40 16 18 C -0.08 -0.88 9.32 -39.32 -0.37 -1.25 16 19 C -0.10 -1.34 5.61 -104.14 -0.58 -1.93 16 20 C -0.11 -1.42 4.05 -91.78 -0.37 -1.79 16 21 C -0.18 -1.77 9.86 -26.73 -0.26 -2.03 16 22 C -0.17 -1.79 9.94 -26.74 -0.27 -2.05 16 23 C -0.03 -0.63 9.64 -39.27 -0.38 -1.01 16 24 C -0.20 -3.93 9.98 -39.45 -0.39 -4.32 16 25 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.14 2.97 5.62 -52.49 -0.30 2.67 16 27 H 0.12 1.87 6.57 -52.49 -0.34 1.52 16 28 H 0.15 1.40 8.06 -52.49 -0.42 0.97 16 29 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 30 H 0.13 1.15 6.28 -52.48 -0.33 0.82 16 31 H 0.13 1.82 6.04 -51.93 -0.31 1.51 16 32 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.09 0.80 6.37 -51.93 -0.33 0.47 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.12 1.93 8.06 -52.48 -0.42 1.50 16 37 H 0.12 2.21 8.06 -52.48 -0.42 1.79 16 LS Contribution 313.91 15.07 4.73 4.73 Total: -1.00 -29.51 313.91 -8.44 -37.95 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -3.99 Total: 5.56 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: -4.99 Total: -27.57 kcal Atomic # 7 Polarization: -32.32 SS G_CDS: 0.68 Total: -31.64 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: 0.00 Total: -5.42 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.86 Total: 16.39 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.51 -8.44 -37.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243593136.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.318 kcal (2) G-P(sol) polarization free energy of solvation -29.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds