Wall clock time and date at job start Tue Mar 31 2020 05:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86803 * 120.00042 * 2 1 4 4 H 1.48501 * 109.47213 * 270.00407 * 3 2 1 5 5 H 1.48506 * 109.46746 * 30.00031 * 3 2 1 6 6 H 1.48493 * 109.47144 * 149.99822 * 3 2 1 7 7 C 1.38661 * 120.00102 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99821 * 359.97438 * 7 2 1 9 9 O 1.34817 * 119.99985 * 180.02562 * 7 2 1 10 10 C 1.35675 * 117.00039 * 174.94104 * 9 7 2 11 11 C 1.39022 * 119.94435 * 5.55840 * 10 9 7 12 12 C 1.37814 * 120.05294 * 180.02562 * 11 10 9 13 13 C 1.39468 * 119.94634 * 359.97438 * 12 11 10 14 14 C 1.48255 * 120.05446 * 180.02562 * 13 12 11 15 15 N 1.32723 * 119.73331 * 224.57123 * 14 13 12 16 16 C 1.31741 * 121.60344 * 180.28783 * 15 14 13 17 17 C 1.38278 * 120.89815 * 359.69096 * 16 15 14 18 18 C 1.38762 * 119.37735 * 0.02562 * 17 16 15 19 19 C 1.38415 * 118.51674 * 359.97438 * 18 17 16 20 20 C 1.50699 * 120.46404 * 179.97438 * 19 18 17 21 21 C 1.52996 * 117.52345 * 346.52967 * 20 19 18 22 22 C 1.52992 * 117.50279 * 55.16441 * 20 19 18 23 23 C 1.39477 * 119.89081 * 0.28138 * 13 12 11 24 24 C 1.37814 * 119.94328 * 359.42048 * 23 13 12 25 25 H 0.97002 * 120.00130 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.97273 * 359.97219 * 11 10 9 27 27 H 1.07996 * 120.02492 * 180.02562 * 12 11 10 28 28 H 1.08000 * 119.54493 * 179.71196 * 16 15 14 29 29 H 1.08001 * 120.30914 * 180.02562 * 17 16 15 30 30 H 1.08005 * 120.74388 * 179.97438 * 18 17 16 31 31 H 1.09001 * 115.54744 * 200.82945 * 20 19 18 32 32 H 1.08995 * 117.50418 * 214.97049 * 21 20 19 33 33 H 1.09000 * 117.49441 * 359.97438 * 21 20 19 34 34 H 1.09005 * 117.49438 * 359.97438 * 22 20 19 35 35 H 1.08996 * 117.50236 * 144.99160 * 22 20 19 36 36 H 1.08004 * 120.02818 * 179.72213 * 23 13 12 37 37 H 1.08004 * 119.97101 * 180.30053 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4469 2.6527 0.7001 6 1 3.5470 1.4402 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4688 -2.1361 -0.0005 9 8 3.3570 -1.2008 0.0000 10 6 3.9729 -2.4050 0.1060 11 6 3.2197 -3.5734 0.0912 12 6 3.8430 -4.7978 0.1993 13 6 5.2306 -4.8641 0.3231 14 6 5.9036 -6.1800 0.4389 15 7 6.8604 -6.3527 1.3424 16 6 7.4866 -7.5044 1.4733 17 6 7.1624 -8.5840 0.6724 18 6 6.1638 -8.4483 -0.2815 19 6 5.5223 -7.2273 -0.3976 20 6 4.4318 -7.0312 -1.4190 21 6 4.2832 -8.0956 -2.5079 22 6 3.2488 -8.0007 -1.3846 23 6 5.9836 -3.6902 0.3430 24 6 5.3562 -2.4685 0.2284 25 1 -0.4850 0.8401 0.0004 26 1 2.1452 -3.5215 -0.0042 27 1 3.2575 -5.7052 0.1874 28 1 8.2634 -7.6067 2.2166 29 1 7.6816 -9.5239 0.7881 30 1 5.8930 -9.2769 -0.9191 31 1 4.2268 -5.9968 -1.6951 32 1 3.9806 -7.7617 -3.5003 33 1 4.9747 -8.9379 -2.4858 34 1 3.2595 -8.7808 -0.6233 35 1 2.2656 -7.6043 -1.6379 36 1 7.0579 -3.7388 0.4433 37 1 5.9393 -1.5595 0.2389 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243593136.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:37 Heat of formation + Delta-G solvation = 43.701833 kcal Electronic energy + Delta-G solvation = -20637.341286 eV Core-core repulsion = 17538.470866 eV Total energy + Delta-G solvation = -3098.870420 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.61603 -40.67057 -38.29166 -38.05860 -34.53597 -33.37495 -32.63312 -31.88429 -29.76299 -27.32782 -25.62540 -24.53302 -23.54538 -23.20715 -22.11172 -21.49242 -19.84571 -19.20781 -18.21804 -17.50893 -16.68982 -16.55210 -15.97842 -15.84058 -15.73759 -15.31614 -15.07856 -14.82378 -14.69402 -14.36004 -14.14152 -13.95949 -13.47757 -13.18723 -12.94165 -12.61812 -12.51297 -12.37878 -12.17986 -12.03104 -11.78404 -11.45363 -11.33958 -10.95670 -10.57848 -10.32332 -9.87998 -9.79534 -8.84207 -8.51960 -6.24313 -0.11931 0.33162 0.51576 0.78380 1.31925 1.36004 1.51810 2.27144 2.63552 2.77696 2.95044 3.09525 3.18569 3.36657 3.58752 3.81624 3.98305 4.01990 4.03075 4.13596 4.15463 4.24251 4.40934 4.47814 4.62715 4.67210 4.76312 4.84274 4.87867 4.99902 5.04313 5.16134 5.21700 5.25280 5.31059 5.43499 5.49798 5.63780 5.73321 5.81268 5.86958 6.13710 6.81839 7.10354 7.53627 8.59099 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.025741 B = 0.004117 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.505856 B = 6799.059441 C = 7591.450197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.014 3.986 3 Si 0.968 3.032 4 H -0.264 1.264 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.402 4.402 8 H 0.085 0.915 9 O -0.238 6.238 10 C 0.135 3.865 11 C -0.234 4.234 12 C -0.042 4.042 13 C -0.124 4.124 14 C 0.164 3.836 15 N -0.506 5.506 16 C 0.081 3.919 17 C -0.166 4.166 18 C -0.079 4.079 19 C -0.096 4.096 20 C -0.141 4.141 21 C -0.158 4.158 22 C -0.165 4.165 23 C -0.038 4.038 24 C -0.192 4.192 25 H 0.286 0.714 26 H 0.118 0.882 27 H 0.135 0.865 28 H 0.180 0.820 29 H 0.171 0.829 30 H 0.161 0.839 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.139 0.861 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.340 -18.932 -2.018 23.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.185 4.185 3 Si 0.790 3.210 4 H -0.189 1.189 5 H -0.192 1.192 6 H -0.187 1.187 7 C -0.478 4.478 8 H 0.103 0.897 9 O -0.144 6.144 10 C 0.085 3.915 11 C -0.253 4.253 12 C -0.061 4.061 13 C -0.126 4.126 14 C 0.028 3.972 15 N -0.215 5.215 16 C -0.077 4.077 17 C -0.185 4.185 18 C -0.105 4.105 19 C -0.098 4.098 20 C -0.159 4.159 21 C -0.194 4.194 22 C -0.202 4.202 23 C -0.057 4.057 24 C -0.211 4.211 25 H 0.095 0.905 26 H 0.136 0.864 27 H 0.153 0.847 28 H 0.197 0.803 29 H 0.189 0.811 30 H 0.179 0.821 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.134 0.866 34 H 0.123 0.877 35 H 0.117 0.883 36 H 0.157 0.843 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 13.465 -17.891 -1.485 22.441 hybrid contribution -0.663 0.305 -0.416 0.840 sum 12.802 -17.587 -1.901 21.836 Atomic orbital electron populations 1.69717 1.06870 1.29703 1.49607 1.25257 0.95849 1.02079 0.95316 0.85253 0.78854 0.77501 0.79377 1.18934 1.19202 1.18721 1.20753 0.77920 0.96319 1.52820 0.89744 1.83502 1.21465 1.27289 1.82179 1.19697 0.92911 0.85155 0.93775 1.21176 1.00458 0.92470 1.11224 1.21003 0.93317 0.96524 0.95207 1.18294 0.92625 0.91551 1.10095 1.19534 0.92991 0.92554 0.92077 1.67734 1.07912 1.26729 1.19153 1.23262 0.97912 0.87855 0.98634 1.22508 0.98437 1.01394 0.96157 1.21731 0.94474 0.96562 0.97685 1.20177 0.98176 0.94382 0.97106 1.21055 0.97753 0.97333 0.99791 1.23183 1.02055 1.00027 0.94176 1.23116 0.93946 1.01065 1.02058 1.20920 0.99809 0.89966 0.94989 1.20393 0.90781 0.99301 1.10643 0.90461 0.86410 0.84691 0.80294 0.81145 0.82112 0.88203 0.87809 0.86599 0.87692 0.88257 0.84284 0.84828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.46 13.96 21.61 0.30 -54.16 16 2 C 0.01 0.81 5.49 84.84 0.47 1.28 16 3 Si 0.97 45.24 28.62 68.60 1.96 47.20 16 4 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.40 -23.57 9.94 67.92 0.68 -22.89 16 8 H 0.09 5.15 5.42 -2.91 -0.02 5.14 16 9 O -0.24 -12.93 8.58 -21.78 -0.19 -13.11 16 10 C 0.13 6.41 6.65 22.64 0.15 6.56 16 11 C -0.23 -10.42 9.15 22.36 0.20 -10.22 16 12 C -0.04 -1.55 7.52 22.47 0.17 -1.38 16 13 C -0.12 -4.39 5.19 -20.02 -0.10 -4.49 16 14 C 0.16 5.01 6.36 41.94 0.27 5.28 16 15 N -0.51 -14.82 10.16 -184.87 -1.88 -16.70 16 16 C 0.08 1.67 11.17 84.72 0.95 2.62 16 17 C -0.17 -2.61 10.11 22.40 0.23 -2.38 16 18 C -0.08 -1.42 9.32 22.44 0.21 -1.21 16 19 C -0.10 -2.39 5.61 -19.55 -0.11 -2.50 16 20 C -0.14 -3.30 4.05 -11.54 -0.05 -3.34 16 21 C -0.16 -2.62 9.86 30.59 0.30 -2.32 16 22 C -0.17 -3.09 9.94 30.59 0.30 -2.79 16 23 C -0.04 -1.37 9.64 22.47 0.22 -1.15 16 24 C -0.19 -7.76 9.98 22.36 0.22 -7.53 16 25 H 0.29 15.52 8.31 -92.71 -0.77 14.74 16 26 H 0.12 5.63 5.62 -2.91 -0.02 5.62 16 27 H 0.14 4.41 6.57 -2.91 -0.02 4.39 16 28 H 0.18 2.52 8.06 -2.91 -0.02 2.50 16 29 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 30 H 0.16 1.86 6.28 -2.91 -0.02 1.84 16 31 H 0.10 2.88 6.04 -2.39 -0.01 2.86 16 32 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.12 1.40 6.37 -2.39 -0.02 1.39 16 34 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 37 H 0.13 4.93 8.06 -2.91 -0.02 4.91 16 Total: -1.00 -68.15 313.91 5.40 -62.75 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 1.10 Total: 20.48 kcal Atomic # 6 Polarization: -50.57 SS G_CDS: 4.10 Total: -46.47 kcal Atomic # 7 Polarization: -69.28 SS G_CDS: -1.58 Total: -70.86 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -0.19 Total: -13.11 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.96 Total: 47.20 kcal Total: -68.15 5.40 -62.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243593136.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.456 kcal (2) G-P(sol) polarization free energy of solvation -68.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds