Wall clock time and date at job start Tue Mar 31 2020 05:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00119 * 2 1 4 4 H 1.48503 * 109.47172 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47094 * 300.00096 * 3 2 1 6 6 H 1.48496 * 109.47289 * 59.99883 * 3 2 1 7 7 C 1.37883 * 119.99557 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99110 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00217 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.46964 * 180.02562 * 9 7 2 11 11 C 1.38383 * 119.92392 * 269.97689 * 10 9 7 12 12 C 1.38339 * 120.29067 * 180.02562 * 11 10 9 13 13 C 1.37977 * 120.15080 * 359.71794 * 12 11 10 14 14 C 1.39576 * 119.84819 * 0.55644 * 13 12 11 15 15 C 1.47813 * 120.14594 * 179.71926 * 14 13 12 16 16 O 1.21565 * 119.99946 * 179.72253 * 15 14 13 17 17 N 1.34775 * 119.99996 * 359.72980 * 15 14 13 18 18 C 1.39841 * 120.00005 * 185.28527 * 17 15 14 19 19 C 1.38894 * 120.07310 * 33.31241 * 18 17 15 20 20 C 1.38108 * 119.92667 * 179.72565 * 19 18 17 21 21 C 1.38283 * 120.07531 * 0.29879 * 20 19 18 22 22 C 1.38292 * 120.14412 * 359.97438 * 21 20 19 23 23 C 1.38109 * 120.06856 * 359.97438 * 22 21 20 24 24 C 1.37935 * 119.92560 * 90.00102 * 10 9 7 25 25 H 0.97003 * 119.99854 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46941 * 59.99821 * 9 7 2 27 27 H 1.08997 * 109.46887 * 299.99578 * 9 7 2 28 28 H 1.07994 * 119.85351 * 0.02562 * 11 10 9 29 29 H 1.07998 * 119.92381 * 180.02562 * 12 11 10 30 30 H 1.07995 * 120.07608 * 180.30684 * 13 12 11 31 31 H 0.96998 * 119.99811 * 5.28345 * 17 15 14 32 32 H 1.08003 * 120.03303 * 0.02562 * 19 18 17 33 33 H 1.08001 * 119.95970 * 180.28401 * 20 19 18 34 34 H 1.07990 * 119.93113 * 179.97438 * 21 20 19 35 35 H 1.08001 * 119.96450 * 179.97438 * 22 21 20 36 36 H 1.08000 * 120.03023 * 180.02562 * 23 22 21 37 37 H 1.08001 * 120.07348 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2302 -3.6447 -0.0005 11 6 2.6785 -4.1697 -1.1999 12 6 3.5770 -5.2215 -1.2087 13 6 4.0367 -5.7503 -0.0201 14 6 3.5842 -5.2292 1.1931 15 6 4.0676 -5.7948 2.4703 16 8 3.6756 -5.3356 3.5254 17 7 4.9431 -6.8195 2.4651 18 6 5.3156 -7.4270 3.6683 19 6 4.4021 -7.5262 4.7099 20 6 4.7715 -8.1319 5.8949 21 6 6.0510 -8.6337 6.0473 22 6 6.9647 -8.5314 5.0142 23 6 6.6014 -7.9279 3.8263 24 6 2.6774 -4.1677 1.1949 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.3252 -3.7565 -2.1330 29 1 3.9232 -5.6264 -2.1482 30 1 4.7419 -6.5681 -0.0285 31 1 5.3147 -7.1355 1.6268 32 1 3.4026 -7.1346 4.5915 33 1 4.0602 -8.2135 6.7035 34 1 6.3375 -9.1064 6.9750 35 1 7.9634 -8.9239 5.1365 36 1 7.3153 -7.8487 3.0198 37 1 2.3268 -3.7570 2.1302 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250054638.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:53 Heat of formation + Delta-G solvation = 8.727580 kcal Electronic energy + Delta-G solvation = -20061.224473 eV Core-core repulsion = 16960.837456 eV Total energy + Delta-G solvation = -3100.387017 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.66485 -38.97316 -37.84674 -34.87619 -33.55763 -31.59291 -31.04295 -30.82645 -29.34572 -27.12206 -24.23337 -23.42864 -22.91349 -21.89037 -21.14656 -19.79561 -18.12659 -17.03197 -16.36271 -16.32808 -15.74724 -15.29206 -14.95744 -14.56248 -14.42995 -14.18482 -13.98961 -13.49543 -13.34484 -12.96643 -12.63129 -12.51325 -11.90070 -11.77829 -11.42420 -11.37573 -11.24924 -10.97084 -10.63728 -10.51854 -10.44940 -9.86059 -9.62546 -9.51254 -9.04710 -8.58688 -8.46649 -8.20555 -8.05340 -6.08853 -4.13036 0.99289 1.27826 1.41233 1.87373 2.98288 3.04451 3.27902 3.35793 3.40660 3.72991 4.27693 4.45725 4.66663 4.81635 4.85049 5.02497 5.09794 5.25110 5.27620 5.30025 5.43146 5.48258 5.74116 5.85292 5.89329 5.96227 6.18905 6.22328 6.26795 6.39003 6.44362 6.48923 6.67808 6.87800 6.94065 6.99785 7.34767 7.37080 7.50568 7.70268 7.86683 8.14300 8.24345 8.91985 9.51396 11.01187 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.024162 B = 0.003386 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.577522 B = 8267.174952 C = 8799.477849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.514 4.514 8 H 0.058 0.942 9 C 0.046 3.954 10 C -0.041 4.041 11 C -0.093 4.093 12 C -0.130 4.130 13 C -0.115 4.115 14 C -0.147 4.147 15 C 0.564 3.436 16 O -0.515 6.515 17 N -0.676 5.676 18 C 0.155 3.845 19 C -0.122 4.122 20 C -0.100 4.100 21 C -0.142 4.142 22 C -0.102 4.102 23 C -0.151 4.151 24 C -0.057 4.057 25 H 0.262 0.738 26 H 0.032 0.968 27 H 0.032 0.968 28 H 0.125 0.875 29 H 0.120 0.880 30 H 0.113 0.887 31 H 0.410 0.590 32 H 0.136 0.864 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.600 -18.287 4.262 22.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.553 4.553 8 H 0.076 0.924 9 C 0.010 3.990 10 C -0.041 4.041 11 C -0.111 4.111 12 C -0.148 4.148 13 C -0.134 4.134 14 C -0.150 4.150 15 C 0.355 3.645 16 O -0.391 6.391 17 N -0.322 5.322 18 C 0.060 3.940 19 C -0.143 4.143 20 C -0.119 4.119 21 C -0.161 4.161 22 C -0.121 4.121 23 C -0.171 4.171 24 C -0.076 4.076 25 H 0.072 0.928 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.143 0.857 29 H 0.138 0.862 30 H 0.131 0.869 31 H 0.247 0.753 32 H 0.154 0.846 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 11.118 -17.799 4.965 21.565 hybrid contribution 0.724 0.832 -0.493 1.208 sum 11.842 -16.967 4.472 21.168 Atomic orbital electron populations 1.69962 1.06044 1.26846 1.50259 1.25010 0.94901 0.99336 0.95021 0.86464 0.80136 0.83372 0.77674 1.19646 1.20908 1.20841 1.21071 0.93083 0.89763 1.51341 0.92369 1.18404 0.92474 0.89385 0.98775 1.20746 0.96492 0.95397 0.91438 1.21386 0.96083 0.94895 0.98713 1.20982 0.98782 0.97741 0.97297 1.20955 1.00320 1.00018 0.92079 1.19641 1.03048 1.00906 0.91451 1.18623 0.77770 0.78315 0.89829 1.90781 1.56338 1.59319 1.32651 1.43520 1.46068 1.34303 1.08294 1.17789 0.93082 0.95785 0.87305 1.21244 1.00147 0.99589 0.93282 1.21063 0.96505 0.97236 0.97078 1.21114 0.94051 1.01778 0.99139 1.20913 0.99444 0.98884 0.92835 1.20903 0.94029 1.03123 0.99077 1.21249 0.94097 0.92812 0.99394 0.92798 0.94962 0.94969 0.85683 0.86174 0.86870 0.75306 0.84630 0.85751 0.86125 0.85834 0.85792 0.84894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.51 -14.23 9.09 -34.44 -0.31 -14.55 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.05 1.17 5.10 -29.04 -0.15 1.02 16 10 C -0.04 -0.85 5.06 -104.68 -0.53 -1.38 16 11 C -0.09 -1.64 9.69 -39.49 -0.38 -2.03 16 12 C -0.13 -1.87 10.03 -39.64 -0.40 -2.27 16 13 C -0.11 -1.58 9.54 -39.18 -0.37 -1.96 16 14 C -0.15 -2.47 5.87 -104.97 -0.62 -3.09 16 15 C 0.56 9.20 7.51 -12.34 -0.09 9.11 16 16 O -0.52 -10.08 14.03 5.31 0.07 -10.01 16 17 N -0.68 -8.47 5.28 -10.73 -0.06 -8.53 16 18 C 0.15 1.96 6.28 -83.72 -0.53 1.43 16 19 C -0.12 -1.64 8.65 -39.39 -0.34 -1.98 16 20 C -0.10 -1.10 10.04 -39.61 -0.40 -1.50 16 21 C -0.14 -1.35 10.04 -39.54 -0.40 -1.75 16 22 C -0.10 -0.94 10.04 -39.61 -0.40 -1.34 16 23 C -0.15 -1.55 9.96 -39.39 -0.39 -1.94 16 24 C -0.06 -1.13 9.24 -39.18 -0.36 -1.49 16 25 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.03 0.84 8.08 -51.93 -0.42 0.42 16 27 H 0.03 0.86 8.08 -51.93 -0.42 0.44 16 28 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16 29 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 30 H 0.11 1.10 6.42 -52.49 -0.34 0.76 16 31 H 0.41 3.80 6.87 -40.82 -0.28 3.52 16 32 H 0.14 2.03 6.41 -52.48 -0.34 1.70 16 33 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.13 2.82 7.65 -52.49 -0.40 2.42 16 LS Contribution 322.99 15.07 4.87 4.87 Total: -1.00 -31.91 322.99 -9.44 -41.35 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -4.27 Total: 3.39 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -5.77 Total: -22.13 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.68 Total: -33.94 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.07 Total: -10.01 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.91 -9.44 -41.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250054638.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.073 kcal (2) G-P(sol) polarization free energy of solvation -31.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds