Wall clock time and date at job start Tue Mar 31 2020 05:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00119 * 2 1 4 4 H 1.48503 * 109.47172 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47094 * 300.00096 * 3 2 1 6 6 H 1.48496 * 109.47289 * 59.99883 * 3 2 1 7 7 C 1.37883 * 119.99557 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99110 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00217 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.46964 * 180.02562 * 9 7 2 11 11 C 1.38383 * 119.92392 * 269.97689 * 10 9 7 12 12 C 1.38339 * 120.29067 * 180.02562 * 11 10 9 13 13 C 1.37977 * 120.15080 * 359.71794 * 12 11 10 14 14 C 1.39576 * 119.84819 * 0.55644 * 13 12 11 15 15 C 1.47813 * 120.14594 * 179.71926 * 14 13 12 16 16 O 1.21565 * 119.99946 * 179.72253 * 15 14 13 17 17 N 1.34775 * 119.99996 * 359.72980 * 15 14 13 18 18 C 1.39841 * 120.00005 * 185.28527 * 17 15 14 19 19 C 1.38894 * 120.07310 * 33.31241 * 18 17 15 20 20 C 1.38108 * 119.92667 * 179.72565 * 19 18 17 21 21 C 1.38283 * 120.07531 * 0.29879 * 20 19 18 22 22 C 1.38292 * 120.14412 * 359.97438 * 21 20 19 23 23 C 1.38109 * 120.06856 * 359.97438 * 22 21 20 24 24 C 1.37935 * 119.92560 * 90.00102 * 10 9 7 25 25 H 0.97003 * 119.99854 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46941 * 59.99821 * 9 7 2 27 27 H 1.08997 * 109.46887 * 299.99578 * 9 7 2 28 28 H 1.07994 * 119.85351 * 0.02562 * 11 10 9 29 29 H 1.07998 * 119.92381 * 180.02562 * 12 11 10 30 30 H 1.07995 * 120.07608 * 180.30684 * 13 12 11 31 31 H 0.96998 * 119.99811 * 5.28345 * 17 15 14 32 32 H 1.08003 * 120.03303 * 0.02562 * 19 18 17 33 33 H 1.08001 * 119.95970 * 180.28401 * 20 19 18 34 34 H 1.07990 * 119.93113 * 179.97438 * 21 20 19 35 35 H 1.08001 * 119.96450 * 179.97438 * 22 21 20 36 36 H 1.08000 * 120.03023 * 180.02562 * 23 22 21 37 37 H 1.08001 * 120.07348 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2302 -3.6447 -0.0005 11 6 2.6785 -4.1697 -1.1999 12 6 3.5770 -5.2215 -1.2087 13 6 4.0367 -5.7503 -0.0201 14 6 3.5842 -5.2292 1.1931 15 6 4.0676 -5.7948 2.4703 16 8 3.6756 -5.3356 3.5254 17 7 4.9431 -6.8195 2.4651 18 6 5.3156 -7.4270 3.6683 19 6 4.4021 -7.5262 4.7099 20 6 4.7715 -8.1319 5.8949 21 6 6.0510 -8.6337 6.0473 22 6 6.9647 -8.5314 5.0142 23 6 6.6014 -7.9279 3.8263 24 6 2.6774 -4.1677 1.1949 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.3252 -3.7565 -2.1330 29 1 3.9232 -5.6264 -2.1482 30 1 4.7419 -6.5681 -0.0285 31 1 5.3147 -7.1355 1.6268 32 1 3.4026 -7.1346 4.5915 33 1 4.0602 -8.2135 6.7035 34 1 6.3375 -9.1064 6.9750 35 1 7.9634 -8.9239 5.1365 36 1 7.3153 -7.8487 3.0198 37 1 2.3268 -3.7570 2.1302 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250054638.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:52 Heat of formation + Delta-G solvation = -9.637737 kcal Electronic energy + Delta-G solvation = -20062.020853 eV Core-core repulsion = 16960.837456 eV Total energy + Delta-G solvation = -3101.183397 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.80692 -40.11315 -39.04457 -36.02206 -35.47198 -33.27733 -32.18991 -31.82874 -30.38563 -28.93090 -25.44961 -25.31959 -23.77977 -22.90893 -22.55719 -21.05559 -19.19180 -18.56499 -18.15302 -17.30458 -16.95738 -16.61723 -16.38293 -16.07848 -15.76214 -15.27907 -14.96483 -14.64097 -14.57728 -14.27001 -14.15747 -13.81881 -13.37403 -13.33993 -12.89152 -12.73369 -12.62756 -12.42490 -12.26167 -12.16469 -11.58567 -11.50883 -11.46673 -11.00193 -10.64698 -9.92030 -9.86631 -9.59374 -9.11560 -8.24557 -6.37715 -0.22158 0.41837 0.47119 0.51768 1.36722 1.38177 1.51137 1.78624 1.91835 2.37189 2.86493 2.98365 3.06897 3.56863 3.93096 4.02973 4.04558 4.07820 4.29750 4.31536 4.50853 4.52394 4.54638 4.60455 4.62467 4.86326 5.09808 5.11624 5.23150 5.29008 5.31615 5.35935 5.40562 5.50473 5.55667 5.62777 5.70122 5.92951 5.99337 6.09416 6.14655 6.34770 6.74855 7.00454 7.31103 8.85539 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.024162 B = 0.003386 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.577522 B = 8267.174952 C = 8799.477849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.966 3.034 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.279 1.279 7 C -0.530 4.530 8 H 0.055 0.945 9 C 0.055 3.945 10 C -0.072 4.072 11 C -0.099 4.099 12 C -0.112 4.112 13 C -0.089 4.089 14 C -0.150 4.150 15 C 0.562 3.438 16 O -0.561 6.561 17 N -0.654 5.654 18 C 0.127 3.873 19 C -0.152 4.152 20 C -0.112 4.112 21 C -0.137 4.137 22 C -0.100 4.100 23 C -0.145 4.145 24 C -0.083 4.083 25 H 0.266 0.734 26 H 0.014 0.986 27 H -0.004 1.004 28 H 0.129 0.871 29 H 0.171 0.829 30 H 0.169 0.831 31 H 0.427 0.573 32 H 0.104 0.896 33 H 0.135 0.865 34 H 0.150 0.850 35 H 0.159 0.841 36 H 0.153 0.847 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.704 -20.604 3.257 26.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.791 3.209 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.205 1.205 7 C -0.568 4.568 8 H 0.073 0.927 9 C 0.018 3.982 10 C -0.072 4.072 11 C -0.117 4.117 12 C -0.129 4.129 13 C -0.107 4.107 14 C -0.153 4.153 15 C 0.353 3.647 16 O -0.440 6.440 17 N -0.300 5.300 18 C 0.033 3.967 19 C -0.172 4.172 20 C -0.131 4.131 21 C -0.156 4.156 22 C -0.118 4.118 23 C -0.165 4.165 24 C -0.102 4.102 25 H 0.075 0.925 26 H 0.032 0.968 27 H 0.014 0.986 28 H 0.147 0.853 29 H 0.189 0.811 30 H 0.187 0.813 31 H 0.268 0.732 32 H 0.123 0.877 33 H 0.153 0.847 34 H 0.167 0.833 35 H 0.177 0.823 36 H 0.171 0.829 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 15.252 -20.161 3.940 25.585 hybrid contribution -0.489 1.379 -0.110 1.468 sum 14.762 -18.782 3.831 24.194 Atomic orbital electron populations 1.70085 1.07670 1.27976 1.51183 1.25947 0.95808 1.03208 0.94500 0.85376 0.78904 0.78644 0.78025 1.18923 1.19629 1.20488 1.21400 0.93085 0.91231 1.51101 0.92719 1.18125 0.92921 0.91155 0.96032 1.20334 0.97715 0.95685 0.93446 1.21518 0.96889 0.96046 0.97259 1.21462 0.96368 0.95505 0.99592 1.21532 0.99167 0.99809 0.90162 1.19722 1.02316 0.99971 0.93293 1.18608 0.78207 0.78952 0.88971 1.90766 1.58161 1.61028 1.34034 1.43218 1.44625 1.32758 1.09441 1.18018 0.94297 0.97276 0.87111 1.21215 0.99496 1.01358 0.95154 1.21277 0.97929 0.97300 0.96573 1.21509 0.93077 1.00520 1.00478 1.21392 1.00812 0.97631 0.91977 1.21241 0.93071 1.01778 1.00385 1.20989 0.96415 0.95064 0.97712 0.92491 0.96788 0.98578 0.85272 0.81146 0.81339 0.73215 0.87743 0.84746 0.83257 0.82350 0.82942 0.88379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.90 13.29 21.45 0.28 -56.61 16 2 C 0.00 0.21 5.46 84.66 0.46 0.67 16 3 Si 0.97 45.13 29.54 68.60 2.03 47.15 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 7 C -0.53 -30.89 9.09 25.60 0.23 -30.65 16 8 H 0.05 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.05 2.98 5.10 29.10 0.15 3.13 16 10 C -0.07 -3.17 5.06 -19.90 -0.10 -3.27 16 11 C -0.10 -3.45 9.69 22.33 0.22 -3.23 16 12 C -0.11 -2.76 10.03 22.23 0.22 -2.54 16 13 C -0.09 -2.09 9.54 22.53 0.21 -1.88 16 14 C -0.15 -4.99 5.87 -20.09 -0.12 -5.11 16 15 C 0.56 18.56 7.51 86.78 0.65 19.21 16 16 O -0.56 -23.50 14.03 -3.92 -0.06 -23.55 16 17 N -0.65 -15.22 5.28 -306.12 -1.62 -16.84 16 18 C 0.13 3.04 6.28 38.18 0.24 3.28 16 19 C -0.15 -4.17 8.65 22.40 0.19 -3.98 16 20 C -0.11 -2.40 10.04 22.25 0.22 -2.18 16 21 C -0.14 -2.20 10.04 22.29 0.22 -1.98 16 22 C -0.10 -1.43 10.04 22.25 0.22 -1.21 16 23 C -0.14 -2.46 9.96 22.40 0.22 -2.24 16 24 C -0.08 -3.53 9.24 22.53 0.21 -3.33 16 25 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 26 H 0.01 0.78 8.08 -2.39 -0.02 0.76 16 27 H 0.00 -0.25 8.08 -2.39 -0.02 -0.27 16 28 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 29 H 0.17 2.64 8.06 -2.91 -0.02 2.61 16 30 H 0.17 2.14 6.42 -2.91 -0.02 2.12 16 31 H 0.43 6.21 6.87 -92.71 -0.64 5.57 16 32 H 0.10 3.46 6.41 -2.91 -0.02 3.44 16 33 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 34 H 0.15 1.51 8.06 -2.92 -0.02 1.48 16 35 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 36 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 37 H 0.10 4.74 7.65 -2.91 -0.02 4.71 16 Total: -1.00 -76.95 322.99 4.56 -72.39 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.45 Total: 12.76 kcal Atomic # 6 Polarization: -38.76 SS G_CDS: 3.47 Total: -35.30 kcal Atomic # 7 Polarization: -72.12 SS G_CDS: -1.33 Total: -73.45 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.06 Total: -23.55 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -76.95 4.56 -72.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250054638.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.756 kcal (2) G-P(sol) polarization free energy of solvation -76.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds