Wall clock time and date at job start Tue Mar 31 2020 05:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99885 * 2 1 4 4 H 1.48502 * 109.47067 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47191 * 120.00044 * 3 2 1 6 6 H 1.48499 * 109.46891 * 240.00123 * 3 2 1 7 7 C 1.37875 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00262 * 14.36974 * 7 2 1 9 9 C 1.50704 * 119.99953 * 194.37771 * 7 2 1 10 10 O 1.42894 * 112.94080 * 65.59337 * 9 7 2 11 11 C 1.53936 * 113.73285 * 294.02776 * 9 7 2 12 12 N 1.48195 * 86.10055 * 221.95888 * 11 9 7 13 13 C 1.46895 * 111.06931 * 137.51819 * 12 11 9 14 14 C 1.53001 * 109.47414 * 70.56634 * 13 12 11 15 15 H 1.09008 * 109.47204 * 59.99638 * 14 13 12 16 16 O 1.42902 * 109.47123 * 300.00097 * 14 13 12 17 17 C 1.50697 * 109.47578 * 179.97438 * 14 13 12 18 18 C 1.38268 * 119.98451 * 84.72990 * 17 14 13 19 19 C 1.38227 * 120.04996 * 179.72838 * 18 17 14 20 20 C 1.38218 * 120.02270 * 0.54488 * 19 18 17 21 21 C 1.38439 * 119.97473 * 359.72488 * 20 19 18 22 22 F 1.35110 * 120.02346 * 180.02562 * 21 20 19 23 23 C 1.38175 * 119.98712 * 265.00350 * 17 14 13 24 24 C 1.47959 * 90.79956 * 24.59932 * 12 11 9 25 25 H 0.97003 * 119.99954 * 174.86854 * 1 2 3 26 26 H 0.96707 * 114.00278 * 305.72315 * 10 9 7 27 27 H 1.09000 * 113.75604 * 336.23732 * 11 9 7 28 28 H 1.08991 * 113.76169 * 107.60364 * 11 9 7 29 29 H 1.09006 * 109.47247 * 190.56465 * 13 12 11 30 30 H 1.09004 * 109.47858 * 310.56652 * 13 12 11 31 31 H 0.96699 * 113.99429 * 299.99551 * 16 14 13 32 32 H 1.08000 * 119.97734 * 359.97438 * 18 17 14 33 33 H 1.07993 * 119.98897 * 180.27273 * 19 18 17 34 34 H 1.08002 * 120.01499 * 179.70685 * 20 19 18 35 35 H 1.07998 * 120.01459 * 0.02562 * 23 17 14 36 36 H 1.08996 * 113.75956 * 221.08913 * 24 12 11 37 37 H 1.09002 * 113.86313 * 89.73197 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1028 1.6965 1.2124 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 1.4900 -2.1146 -0.2330 9 6 3.4762 -1.2145 0.3235 10 8 3.7550 -0.8319 1.6718 11 6 4.3501 -0.4933 -0.7184 12 7 5.2901 -1.6289 -0.5671 13 6 5.8072 -2.0639 -1.8715 14 6 6.7615 -1.0021 -2.4217 15 1 7.5919 -0.8658 -1.7287 16 8 6.0613 0.2342 -2.5750 17 6 7.2924 -1.4485 -3.7595 18 6 6.5628 -1.2056 -4.9085 19 6 7.0511 -1.6095 -6.1370 20 6 8.2643 -2.2668 -6.2167 21 6 8.9931 -2.5156 -5.0663 22 9 10.1794 -3.1576 -5.1431 23 6 8.5055 -2.1055 -3.8367 24 6 4.1889 -2.5070 -0.1137 25 1 -0.4850 -0.8367 -0.0751 26 1 3.3822 0.0244 1.9228 27 1 3.8935 -0.4298 -1.7061 28 1 4.7509 0.4591 -0.3718 29 1 6.3413 -3.0069 -1.7545 30 1 4.9769 -2.2002 -2.5645 31 1 5.3079 0.1870 -3.1794 32 1 5.6124 -0.6963 -4.8467 33 1 6.4824 -1.4153 -7.0343 34 1 8.6435 -2.5866 -7.1761 35 1 9.0730 -2.2995 -2.9386 36 1 4.4611 -3.1603 0.7152 37 1 3.6840 -3.0347 -0.9229 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261425134.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:45 Heat of formation + Delta-G solvation = -75.435991 kcal Electronic energy + Delta-G solvation = -22083.684731 eV Core-core repulsion = 18548.878883 eV Total energy + Delta-G solvation = -3534.805848 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.10973 -40.10021 -39.04425 -36.73845 -34.36814 -32.51029 -32.17337 -30.66586 -29.59148 -26.59434 -25.44607 -24.30359 -23.03586 -21.88543 -20.97875 -19.06678 -18.05353 -17.78955 -16.76381 -16.43845 -16.13042 -15.80223 -15.65316 -15.41561 -14.78391 -14.59962 -14.24840 -13.97836 -13.41311 -13.31430 -12.95782 -12.72013 -12.63676 -12.09437 -12.00229 -11.89527 -11.70079 -11.24698 -11.08145 -10.88831 -10.57704 -10.28452 -9.98891 -9.67404 -9.25864 -9.19788 -8.91471 -8.86337 -8.40750 -7.98320 -6.62841 -4.36303 0.88009 0.93842 3.21717 3.29303 3.32368 3.46598 3.92010 4.24872 4.28577 4.41574 4.55576 4.65763 4.80176 4.88538 4.97889 5.05865 5.17928 5.21894 5.48761 5.57605 5.66358 5.72945 5.78904 5.83726 5.88501 5.93558 6.05188 6.17840 6.30591 6.44984 6.59862 6.61793 6.90929 6.99848 7.60736 7.69424 7.74958 8.15705 8.66200 8.91455 9.38799 10.72050 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029188 B = 0.004268 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.064555 B = 6559.052177 C = 6884.511658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.035 3.965 3 Si 1.046 2.954 4 H -0.284 1.284 5 H -0.280 1.280 6 H -0.271 1.271 7 C -0.619 4.619 8 H 0.062 0.938 9 C 0.200 3.800 10 O -0.565 6.565 11 C -0.016 4.016 12 N -0.471 5.471 13 C -0.008 4.008 14 C 0.152 3.848 15 H 0.116 0.884 16 O -0.543 6.543 17 C -0.079 4.079 18 C -0.122 4.122 19 C -0.086 4.086 20 C -0.159 4.159 21 C 0.098 3.902 22 F -0.141 7.141 23 C -0.144 4.144 24 C 0.024 3.976 25 H 0.271 0.729 26 H 0.363 0.637 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.043 0.957 31 H 0.371 0.629 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.077 0.923 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.352 -2.426 -11.775 18.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.172 4.172 3 Si 0.874 3.126 4 H -0.210 1.210 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.657 4.657 8 H 0.081 0.919 9 C 0.159 3.841 10 O -0.373 6.373 11 C -0.145 4.145 12 N -0.194 5.194 13 C -0.137 4.137 14 C 0.092 3.908 15 H 0.133 0.867 16 O -0.348 6.348 17 C -0.081 4.081 18 C -0.140 4.140 19 C -0.104 4.104 20 C -0.177 4.177 21 C 0.079 3.921 22 F -0.120 7.120 23 C -0.163 4.163 24 C -0.105 4.105 25 H 0.081 0.919 26 H 0.212 0.788 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.220 0.780 32 H 0.147 0.853 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.155 0.845 36 H 0.096 0.904 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.551 -1.123 -10.909 19.029 hybrid contribution -0.923 -1.815 -1.279 2.405 sum 14.628 -2.939 -12.188 19.266 Atomic orbital electron populations 1.70829 1.06903 1.31193 1.43745 1.25851 0.96255 1.02576 0.92554 0.84065 0.75002 0.75730 0.77830 1.21010 1.20685 1.19658 1.22332 0.93557 0.96313 1.53518 0.91938 1.20391 0.93150 0.90607 0.79976 1.86348 1.79368 1.41270 1.30321 1.24921 0.93260 0.95515 1.00808 1.68557 1.25022 1.05645 1.20172 1.23268 0.98457 0.98269 0.93708 1.20834 0.94816 0.84246 0.90862 0.86661 1.86715 1.47132 1.31949 1.69054 1.20565 0.93900 0.96687 0.96901 1.21025 1.00340 1.00671 0.92006 1.20989 0.94848 0.96552 0.98047 1.21151 0.96352 1.02546 0.97684 1.17681 0.82731 0.97009 0.94656 1.91503 1.43974 1.79314 1.97172 1.20983 0.97194 1.01197 0.96922 1.23928 0.90603 0.96767 0.99167 0.91881 0.78817 0.91422 0.90639 0.90304 0.93892 0.78033 0.85299 0.84820 0.84815 0.84458 0.90415 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.70 55.43 0.76 -25.42 16 2 C 0.03 0.95 5.44 -17.82 -0.10 0.85 16 3 Si 1.05 23.66 24.55 -169.99 -4.17 19.48 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.28 -5.88 5.81 56.52 0.33 -5.55 16 6 H -0.27 -5.66 6.48 56.52 0.37 -5.29 16 7 C -0.62 -16.77 9.04 -34.44 -0.31 -17.08 16 8 H 0.06 1.82 8.06 -52.49 -0.42 1.40 16 9 C 0.20 4.75 1.07 -90.83 -0.10 4.65 16 10 O -0.57 -13.86 13.47 -35.23 -0.47 -14.34 16 11 C -0.02 -0.34 2.75 -2.63 -0.01 -0.34 16 12 N -0.47 -9.01 6.26 -238.02 -1.49 -10.50 16 13 C -0.01 -0.12 4.66 -3.83 -0.02 -0.13 16 14 C 0.15 2.04 3.47 -27.88 -0.10 1.94 16 15 H 0.12 1.57 8.05 -51.92 -0.42 1.16 16 16 O -0.54 -7.96 10.89 -35.23 -0.38 -8.35 16 17 C -0.08 -0.92 5.00 -104.64 -0.52 -1.44 16 18 C -0.12 -1.26 9.33 -39.57 -0.37 -1.63 16 19 C -0.09 -0.78 10.04 -39.59 -0.40 -1.18 16 20 C -0.16 -1.50 10.03 -39.51 -0.40 -1.90 16 21 C 0.10 1.08 7.30 -39.42 -0.29 0.79 16 22 F -0.14 -1.63 17.27 2.25 0.04 -1.59 16 23 C -0.14 -1.60 9.66 -39.52 -0.38 -1.99 16 24 C 0.02 0.50 7.36 -2.76 -0.02 0.47 16 25 H 0.27 7.92 8.73 -40.82 -0.36 7.57 16 26 H 0.36 8.37 6.07 45.56 0.28 8.65 16 27 H 0.07 1.38 6.76 -51.93 -0.35 1.02 16 28 H 0.08 1.61 6.80 -51.93 -0.35 1.26 16 29 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.04 0.65 7.70 -51.93 -0.40 0.25 16 31 H 0.37 4.56 6.73 45.56 0.31 4.86 16 32 H 0.13 1.16 6.62 -52.49 -0.35 0.81 16 33 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 36 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 37 H 0.07 1.38 7.75 -51.93 -0.40 0.97 16 LS Contribution 304.39 15.07 4.59 4.59 Total: -1.00 -30.71 304.39 -7.63 -38.34 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -3.49 Total: 14.77 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -3.00 Total: -16.98 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: -0.73 Total: -35.92 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.86 Total: -22.68 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 23.66 SS G_CDS: -4.17 Total: 19.48 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.71 -7.63 -38.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261425134.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.100 kcal (2) G-P(sol) polarization free energy of solvation -30.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds