Wall clock time and date at job start Tue Mar 31 2020 05:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99885 * 2 1 4 4 H 1.48502 * 109.47067 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47191 * 120.00044 * 3 2 1 6 6 H 1.48499 * 109.46891 * 240.00123 * 3 2 1 7 7 C 1.37875 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00262 * 14.36974 * 7 2 1 9 9 C 1.50704 * 119.99953 * 194.37771 * 7 2 1 10 10 O 1.42894 * 112.94080 * 65.59337 * 9 7 2 11 11 C 1.53936 * 113.73285 * 294.02776 * 9 7 2 12 12 N 1.48195 * 86.10055 * 221.95888 * 11 9 7 13 13 C 1.46895 * 111.06931 * 137.51819 * 12 11 9 14 14 C 1.53001 * 109.47414 * 70.56634 * 13 12 11 15 15 H 1.09008 * 109.47204 * 59.99638 * 14 13 12 16 16 O 1.42902 * 109.47123 * 300.00097 * 14 13 12 17 17 C 1.50697 * 109.47578 * 179.97438 * 14 13 12 18 18 C 1.38268 * 119.98451 * 84.72990 * 17 14 13 19 19 C 1.38227 * 120.04996 * 179.72838 * 18 17 14 20 20 C 1.38218 * 120.02270 * 0.54488 * 19 18 17 21 21 C 1.38439 * 119.97473 * 359.72488 * 20 19 18 22 22 F 1.35110 * 120.02346 * 180.02562 * 21 20 19 23 23 C 1.38175 * 119.98712 * 265.00350 * 17 14 13 24 24 C 1.47959 * 90.79956 * 24.59932 * 12 11 9 25 25 H 0.97003 * 119.99954 * 174.86854 * 1 2 3 26 26 H 0.96707 * 114.00278 * 305.72315 * 10 9 7 27 27 H 1.09000 * 113.75604 * 336.23732 * 11 9 7 28 28 H 1.08991 * 113.76169 * 107.60364 * 11 9 7 29 29 H 1.09006 * 109.47247 * 190.56465 * 13 12 11 30 30 H 1.09004 * 109.47858 * 310.56652 * 13 12 11 31 31 H 0.96699 * 113.99429 * 299.99551 * 16 14 13 32 32 H 1.08000 * 119.97734 * 359.97438 * 18 17 14 33 33 H 1.07993 * 119.98897 * 180.27273 * 19 18 17 34 34 H 1.08002 * 120.01499 * 179.70685 * 20 19 18 35 35 H 1.07998 * 120.01459 * 0.02562 * 23 17 14 36 36 H 1.08996 * 113.75956 * 221.08913 * 24 12 11 37 37 H 1.09002 * 113.86313 * 89.73197 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1028 1.6965 1.2124 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 1.4900 -2.1146 -0.2330 9 6 3.4762 -1.2145 0.3235 10 8 3.7550 -0.8319 1.6718 11 6 4.3501 -0.4933 -0.7184 12 7 5.2901 -1.6289 -0.5671 13 6 5.8072 -2.0639 -1.8715 14 6 6.7615 -1.0021 -2.4217 15 1 7.5919 -0.8658 -1.7287 16 8 6.0613 0.2342 -2.5750 17 6 7.2924 -1.4485 -3.7595 18 6 6.5628 -1.2056 -4.9085 19 6 7.0511 -1.6095 -6.1370 20 6 8.2643 -2.2668 -6.2167 21 6 8.9931 -2.5156 -5.0663 22 9 10.1794 -3.1576 -5.1431 23 6 8.5055 -2.1055 -3.8367 24 6 4.1889 -2.5070 -0.1137 25 1 -0.4850 -0.8367 -0.0751 26 1 3.3822 0.0244 1.9228 27 1 3.8935 -0.4298 -1.7061 28 1 4.7509 0.4591 -0.3718 29 1 6.3413 -3.0069 -1.7545 30 1 4.9769 -2.2002 -2.5645 31 1 5.3079 0.1870 -3.1794 32 1 5.6124 -0.6963 -4.8467 33 1 6.4824 -1.4153 -7.0343 34 1 8.6435 -2.5866 -7.1761 35 1 9.0730 -2.2995 -2.9386 36 1 4.4611 -3.1603 0.7152 37 1 3.6840 -3.0347 -0.9229 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261425134.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:45 Heat of formation + Delta-G solvation = -101.239504 kcal Electronic energy + Delta-G solvation = -22084.803656 eV Core-core repulsion = 18548.878883 eV Total energy + Delta-G solvation = -3535.924773 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.93738 -41.37118 -40.23009 -37.86585 -36.09558 -34.62137 -33.12062 -31.47678 -30.87843 -28.22215 -27.10052 -25.71676 -23.79545 -23.18944 -22.08185 -20.87153 -19.85599 -18.90435 -17.67592 -17.50407 -17.18383 -17.09652 -16.81363 -16.63223 -16.36820 -15.81514 -15.58090 -15.16905 -14.87263 -14.60499 -14.32869 -14.01940 -13.80136 -13.53959 -13.43205 -12.90630 -12.77401 -12.64684 -12.55720 -12.27996 -12.07591 -11.96958 -11.58485 -11.17688 -11.04652 -10.84494 -10.18725 -9.98897 -9.71141 -9.70017 -8.79874 -6.56923 0.09472 0.18062 1.43635 1.51810 1.69444 2.40989 2.50736 2.90737 2.93373 3.16196 3.45977 3.52372 3.76711 3.79108 3.87956 4.05241 4.07495 4.14446 4.15536 4.24982 4.40242 4.46370 4.64279 4.72953 4.78089 4.86869 4.91554 5.03780 5.10253 5.24784 5.30846 5.34673 5.46021 5.73396 5.86789 5.89514 6.16393 6.41178 6.66637 7.04672 7.28003 8.52353 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029188 B = 0.004268 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.064555 B = 6559.052177 C = 6884.511658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.007 4.007 3 Si 1.079 2.921 4 H -0.291 1.291 5 H -0.255 1.255 6 H -0.239 1.239 7 C -0.625 4.625 8 H 0.024 0.976 9 C 0.180 3.820 10 O -0.574 6.574 11 C 0.000 4.000 12 N -0.471 5.471 13 C -0.007 4.007 14 C 0.162 3.838 15 H 0.111 0.889 16 O -0.558 6.558 17 C -0.090 4.090 18 C -0.128 4.128 19 C -0.083 4.083 20 C -0.155 4.155 21 C 0.080 3.920 22 F -0.148 7.148 23 C -0.151 4.151 24 C 0.027 3.973 25 H 0.256 0.744 26 H 0.367 0.633 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.046 0.954 31 H 0.381 0.619 32 H 0.142 0.858 33 H 0.163 0.837 34 H 0.155 0.845 35 H 0.142 0.858 36 H 0.078 0.922 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.230 -1.683 -13.331 21.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.207 4.207 3 Si 0.899 3.101 4 H -0.217 1.217 5 H -0.180 1.180 6 H -0.162 1.162 7 C -0.663 4.663 8 H 0.043 0.957 9 C 0.139 3.861 10 O -0.382 6.382 11 C -0.129 4.129 12 N -0.194 5.194 13 C -0.136 4.136 14 C 0.102 3.898 15 H 0.129 0.871 16 O -0.365 6.365 17 C -0.091 4.091 18 C -0.146 4.146 19 C -0.101 4.101 20 C -0.173 4.173 21 C 0.061 3.939 22 F -0.127 7.127 23 C -0.170 4.170 24 C -0.102 4.102 25 H 0.065 0.935 26 H 0.216 0.784 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.110 0.890 30 H 0.065 0.935 31 H 0.231 0.769 32 H 0.159 0.841 33 H 0.180 0.820 34 H 0.173 0.827 35 H 0.160 0.840 36 H 0.096 0.904 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 17.444 -0.414 -12.471 21.448 hybrid contribution -1.538 -2.159 -0.823 2.776 sum 15.906 -2.573 -13.294 20.889 Atomic orbital electron populations 1.70963 1.08220 1.30319 1.46511 1.27243 0.96043 1.06191 0.91264 0.83713 0.74640 0.71393 0.80342 1.21740 1.18009 1.16250 1.22496 0.95772 0.94923 1.53108 0.95741 1.20572 0.91605 0.93564 0.80358 1.86333 1.79223 1.41776 1.30858 1.24683 0.92618 0.95879 0.99694 1.68477 1.23665 1.04447 1.22766 1.23345 0.98970 0.99548 0.91693 1.20663 0.94017 0.83265 0.91849 0.87107 1.86681 1.47751 1.32529 1.69562 1.20353 0.94434 0.97926 0.96347 1.21284 1.00736 1.00433 0.92116 1.21322 0.94674 0.95485 0.98636 1.21473 0.96186 1.01588 0.98094 1.17887 0.82924 0.97774 0.95275 1.91484 1.44431 1.79561 1.97218 1.21074 0.97294 1.01247 0.97415 1.23875 0.90991 0.95940 0.99391 0.93509 0.78359 0.90869 0.90420 0.89008 0.93531 0.76948 0.84077 0.81972 0.82721 0.84018 0.90391 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.47 13.70 21.45 0.29 -55.18 16 2 C -0.01 -0.39 5.44 84.65 0.46 0.07 16 3 Si 1.08 46.20 24.55 68.60 1.68 47.88 16 4 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 5 H -0.25 -9.83 5.81 99.48 0.58 -9.25 16 6 H -0.24 -8.97 6.48 99.48 0.64 -8.33 16 7 C -0.63 -34.30 9.04 25.60 0.23 -34.07 16 8 H 0.02 1.48 8.06 -2.91 -0.02 1.45 16 9 C 0.18 8.38 1.07 -10.89 -0.01 8.37 16 10 O -0.57 -27.46 13.47 -148.98 -2.01 -29.47 16 11 C 0.00 0.01 2.75 86.36 0.24 0.25 16 12 N -0.47 -17.03 6.26 -910.16 -5.70 -22.73 16 13 C -0.01 -0.18 4.66 86.30 0.40 0.22 16 14 C 0.16 3.95 3.47 29.85 0.10 4.05 16 15 H 0.11 2.80 8.05 -2.38 -0.02 2.78 16 16 O -0.56 -14.80 10.89 -148.98 -1.62 -16.43 16 17 C -0.09 -1.86 5.00 -19.87 -0.10 -1.96 16 18 C -0.13 -2.25 9.33 22.27 0.21 -2.04 16 19 C -0.08 -1.22 10.04 22.26 0.22 -0.99 16 20 C -0.15 -2.48 10.03 22.31 0.22 -2.26 16 21 C 0.08 1.62 7.30 22.38 0.16 1.78 16 22 F -0.15 -3.22 17.27 44.97 0.78 -2.44 16 23 C -0.15 -3.11 9.66 22.31 0.22 -2.89 16 24 C 0.03 1.08 7.36 86.41 0.64 1.72 16 25 H 0.26 15.61 8.73 -92.71 -0.81 14.80 16 26 H 0.37 16.39 6.07 -74.05 -0.45 15.94 16 27 H 0.07 2.79 6.76 -2.39 -0.02 2.77 16 28 H 0.08 3.07 6.80 -2.39 -0.02 3.05 16 29 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 30 H 0.05 1.28 7.70 -2.39 -0.02 1.27 16 31 H 0.38 8.19 6.73 -74.06 -0.50 7.69 16 32 H 0.14 2.08 6.62 -2.91 -0.02 2.06 16 33 H 0.16 1.41 8.06 -2.91 -0.02 1.38 16 34 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 35 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 36 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 37 H 0.07 2.85 7.75 -2.39 -0.02 2.83 16 Total: -1.00 -66.33 304.39 -3.65 -69.98 By element: Atomic # 1 Polarization: 36.23 SS G_CDS: -0.07 Total: 36.16 kcal Atomic # 6 Polarization: -30.76 SS G_CDS: 2.99 Total: -27.76 kcal Atomic # 7 Polarization: -72.50 SS G_CDS: -5.41 Total: -77.91 kcal Atomic # 8 Polarization: -42.27 SS G_CDS: -3.63 Total: -45.90 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.78 Total: -2.44 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.68 Total: 47.88 kcal Total: -66.33 -3.65 -69.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261425134.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.264 kcal (2) G-P(sol) polarization free energy of solvation -66.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds