Wall clock time and date at job start Tue Mar 31 2020 05:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47281 * 2 1 4 4 C 1.50695 * 109.47206 * 179.97438 * 3 2 1 5 5 N 1.30436 * 125.98943 * 269.97159 * 4 3 2 6 6 N 1.39936 * 108.91740 * 180.02562 * 5 4 3 7 7 H 0.96994 * 125.73869 * 179.97438 * 6 5 4 8 8 C 1.34219 * 108.51114 * 359.74499 * 6 5 4 9 9 C 1.38123 * 107.41374 * 0.39892 * 8 6 5 10 10 C 1.47286 * 126.43116 * 179.86876 * 9 8 6 11 11 O 1.21530 * 120.00092 * 179.41317 * 10 9 8 12 12 O 1.34754 * 120.00019 * 359.68659 * 10 9 8 13 13 C 1.45199 * 117.00071 * 179.72367 * 12 10 9 14 14 C 1.50697 * 109.46937 * 179.97438 * 13 12 10 15 15 O 1.21293 * 120.00075 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00039 * 179.97438 * 14 13 12 17 17 C 1.37091 * 120.00465 * 179.97438 * 16 14 13 18 18 H 1.08006 * 119.99942 * 0.02562 * 17 16 14 19 19 C 1.38949 * 120.00652 * 180.02562 * 17 16 14 20 20 N 1.31417 * 119.99528 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00381 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47294 * 59.99955 * 21 19 17 23 23 H 1.48500 * 109.47166 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47026 * 299.99761 * 21 19 17 25 25 H 1.08999 * 109.47163 * 300.00936 * 1 2 3 26 26 H 1.08997 * 109.46704 * 60.00628 * 1 2 3 27 27 H 1.08999 * 109.47460 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47628 * 239.98872 * 2 1 3 29 29 H 1.09005 * 109.46961 * 119.99183 * 2 1 3 30 30 H 1.08996 * 109.47711 * 59.98923 * 3 2 1 31 31 H 1.09005 * 109.46457 * 299.99492 * 3 2 1 32 32 H 1.08003 * 126.29707 * 180.24029 * 8 6 5 33 33 H 1.08997 * 109.46967 * 299.99910 * 13 12 10 34 34 H 1.09002 * 109.46640 * 60.00114 * 13 12 10 35 35 H 0.97000 * 119.99896 * 0.02562 * 16 14 13 36 36 H 0.96998 * 119.99441 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 7 4.3130 1.4431 1.0563 6 7 5.6509 1.4434 0.6461 7 1 6.4234 1.4443 1.2327 8 6 5.6852 1.4373 -0.6956 9 6 4.3783 1.4422 -1.1426 10 6 3.9341 1.4410 -2.5468 11 8 2.7474 1.4351 -2.8088 12 8 4.8435 1.4410 -3.5412 13 6 4.3338 1.4335 -4.9008 14 6 5.4878 1.4352 -5.8699 15 8 6.6278 1.4416 -5.4555 16 7 5.2533 1.4287 -7.1971 17 6 6.3031 1.4308 -8.0787 18 1 7.3182 1.4373 -7.7098 19 6 6.0613 1.4245 -9.4470 20 7 4.8263 1.4171 -9.8960 21 14 7.4918 1.4266 -10.6483 22 1 8.3267 0.2189 -10.4261 23 1 6.9705 1.4197 -12.0388 24 1 8.3154 2.6438 -10.4352 25 1 -0.3633 0.5140 0.8899 26 1 -0.3632 0.5137 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5140 -0.8898 29 1 1.8933 -0.5137 0.8901 30 1 1.6766 1.9564 0.8898 31 1 1.6767 1.9562 -0.8901 32 1 6.5717 1.4322 -1.3125 33 1 3.7289 0.5404 -5.0571 34 1 3.7214 2.3204 -5.0640 35 1 4.3417 1.4232 -7.5284 36 1 4.6575 1.4131 -10.8511 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318330357.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:12 Heat of formation + Delta-G solvation = -64.567067 kcal Electronic energy + Delta-G solvation = -21149.372131 eV Core-core repulsion = 17634.957557 eV Total energy + Delta-G solvation = -3514.414575 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.61727 -39.74756 -38.03862 -36.04988 -35.19218 -33.98321 -31.80689 -31.38494 -30.83931 -28.23004 -27.24242 -24.74524 -23.40485 -22.12565 -20.88798 -19.70078 -19.51178 -18.36128 -18.02350 -17.03128 -16.22100 -15.98830 -15.36494 -15.19050 -15.00987 -14.56690 -14.47650 -13.96494 -13.80498 -13.55754 -13.14375 -12.90041 -12.23326 -12.14145 -11.94245 -11.65229 -11.61423 -11.38729 -11.18564 -11.10866 -10.75484 -10.48841 -10.31954 -10.29996 -10.17227 -9.72951 -9.58705 -9.04837 -8.50428 -8.07260 -6.49056 -3.91112 1.28344 1.90109 2.40812 2.93054 3.15585 3.23045 3.23826 3.27994 3.76067 4.12520 4.26938 4.53235 4.85563 4.92716 5.00125 5.08749 5.16611 5.18711 5.35363 5.42773 5.60110 5.68619 5.70706 5.75623 5.78278 5.92571 6.08803 6.15271 6.21187 6.26980 6.74124 6.86134 7.30948 7.48186 7.92194 8.07853 8.49986 9.07895 9.40798 9.90776 10.68144 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.028691 B = 0.003251 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.689773 B = 8611.353349 C = 9463.751730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.047 4.047 4 C 0.144 3.856 5 N -0.301 5.301 6 N -0.463 5.463 7 H 0.446 0.554 8 C 0.141 3.859 9 C -0.276 4.276 10 C 0.538 3.462 11 O -0.515 6.515 12 O -0.327 6.327 13 C 0.064 3.936 14 C 0.439 3.561 15 O -0.579 6.579 16 N -0.553 5.553 17 C -0.303 4.303 18 H 0.105 0.895 19 C 0.025 3.975 20 N -0.897 5.897 21 Si 0.934 3.066 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.273 1.273 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.200 0.800 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.395 0.605 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.358 -0.771 18.203 18.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.086 4.086 4 C -0.024 4.024 5 N -0.123 5.123 6 N -0.167 5.167 7 H 0.291 0.709 8 C -0.013 4.013 9 C -0.289 4.289 10 C 0.382 3.618 11 O -0.405 6.405 12 O -0.242 6.242 13 C -0.014 4.014 14 C 0.224 3.776 15 O -0.463 6.463 16 N -0.190 5.190 17 C -0.432 4.432 18 H 0.123 0.877 19 C -0.177 4.177 20 N -0.538 5.538 21 Si 0.761 3.239 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.198 1.198 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.120 0.880 32 H 0.217 0.783 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.229 0.771 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.970 -0.761 19.436 19.852 hybrid contribution 0.550 0.007 -1.587 1.680 sum -3.419 -0.754 17.849 18.189 Atomic orbital electron populations 1.21737 0.95230 1.01718 1.01991 1.21382 0.96077 0.95298 1.02302 1.20271 0.85123 0.98873 1.04371 1.22476 0.97109 0.94569 0.88293 1.77164 0.86271 1.26672 1.22183 1.46135 1.07849 1.56981 1.05687 0.70929 1.23526 0.99795 0.92875 0.85078 1.19393 0.92655 1.25472 0.91333 1.20012 0.84019 0.72645 0.85074 1.90790 1.17674 1.47401 1.84651 1.86572 1.38563 1.83632 1.15412 1.22701 0.96802 1.03528 0.78350 1.19347 0.89223 0.85804 0.83214 1.90541 1.22576 1.55401 1.77775 1.41695 1.10143 1.63818 1.03333 1.19668 0.89058 1.48319 0.86191 0.87704 1.25305 0.97754 0.96907 0.97757 1.69609 1.18970 1.49596 1.15585 0.85864 0.80354 0.79157 0.78544 1.19776 1.20876 1.19786 0.92840 0.92161 0.92682 0.91406 0.92194 0.90353 0.87984 0.78303 0.89537 0.89540 0.77126 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 37.16 0.37 -0.96 16 2 C -0.11 -1.18 5.92 -26.73 -0.16 -1.34 16 3 C -0.05 -0.54 5.25 -27.89 -0.15 -0.68 16 4 C 0.14 1.85 6.52 -82.01 -0.53 1.32 16 5 N -0.30 -3.64 12.63 33.90 0.43 -3.21 16 6 N -0.46 -4.27 7.28 30.86 0.22 -4.05 16 7 H 0.45 2.35 8.96 -182.73 -1.64 0.71 16 8 C 0.14 1.51 11.86 -16.55 -0.20 1.32 16 9 C -0.28 -3.81 6.13 -105.08 -0.64 -4.46 16 10 C 0.54 8.86 7.95 34.41 0.27 9.14 16 11 O -0.52 -8.99 14.72 -19.29 -0.28 -9.27 16 12 O -0.33 -6.04 9.58 -47.32 -0.45 -6.49 16 13 C 0.06 1.21 5.95 36.00 0.21 1.42 16 14 C 0.44 10.45 7.86 -10.99 -0.09 10.37 16 15 O -0.58 -15.73 16.08 -14.11 -0.23 -15.96 16 16 N -0.55 -13.86 5.29 -10.96 -0.06 -13.92 16 17 C -0.30 -8.30 9.68 -14.94 -0.14 -8.44 16 18 H 0.11 2.98 7.16 -52.48 -0.38 2.61 16 19 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 20 N -0.90 -23.95 13.05 55.50 0.72 -23.23 16 21 Si 0.93 20.57 29.55 -169.99 -5.02 15.54 16 22 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.10 1.27 6.56 -51.93 -0.34 0.93 16 32 H 0.20 1.74 8.06 -52.48 -0.42 1.32 16 33 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 34 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 35 H 0.40 9.41 7.90 -40.82 -0.32 9.09 16 36 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 324.11 15.07 4.88 4.88 Total: -1.00 -33.23 324.11 -6.55 -39.78 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -5.62 Total: 7.67 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: -1.15 Total: 8.24 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: 1.32 Total: -44.40 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.96 Total: -31.72 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.23 -6.55 -39.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318330357.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.782 kcal (2) G-P(sol) polarization free energy of solvation -33.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds