Wall clock time and date at job start Tue Mar 31 2020 05:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47281 * 2 1 4 4 C 1.50695 * 109.47206 * 179.97438 * 3 2 1 5 5 N 1.30436 * 125.98943 * 269.97159 * 4 3 2 6 6 N 1.39936 * 108.91740 * 180.02562 * 5 4 3 7 7 H 0.96994 * 125.73869 * 179.97438 * 6 5 4 8 8 C 1.34219 * 108.51114 * 359.74499 * 6 5 4 9 9 C 1.38123 * 107.41374 * 0.39892 * 8 6 5 10 10 C 1.47286 * 126.43116 * 179.86876 * 9 8 6 11 11 O 1.21530 * 120.00092 * 179.41317 * 10 9 8 12 12 O 1.34754 * 120.00019 * 359.68659 * 10 9 8 13 13 C 1.45199 * 117.00071 * 179.72367 * 12 10 9 14 14 C 1.50697 * 109.46937 * 179.97438 * 13 12 10 15 15 O 1.21293 * 120.00075 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00039 * 179.97438 * 14 13 12 17 17 C 1.37091 * 120.00465 * 179.97438 * 16 14 13 18 18 H 1.08006 * 119.99942 * 0.02562 * 17 16 14 19 19 C 1.38949 * 120.00652 * 180.02562 * 17 16 14 20 20 N 1.31417 * 119.99528 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00381 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47294 * 59.99955 * 21 19 17 23 23 H 1.48500 * 109.47166 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47026 * 299.99761 * 21 19 17 25 25 H 1.08999 * 109.47163 * 300.00936 * 1 2 3 26 26 H 1.08997 * 109.46704 * 60.00628 * 1 2 3 27 27 H 1.08999 * 109.47460 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47628 * 239.98872 * 2 1 3 29 29 H 1.09005 * 109.46961 * 119.99183 * 2 1 3 30 30 H 1.08996 * 109.47711 * 59.98923 * 3 2 1 31 31 H 1.09005 * 109.46457 * 299.99492 * 3 2 1 32 32 H 1.08003 * 126.29707 * 180.24029 * 8 6 5 33 33 H 1.08997 * 109.46967 * 299.99910 * 13 12 10 34 34 H 1.09002 * 109.46640 * 60.00114 * 13 12 10 35 35 H 0.97000 * 119.99896 * 0.02562 * 16 14 13 36 36 H 0.96998 * 119.99441 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 7 4.3130 1.4431 1.0563 6 7 5.6509 1.4434 0.6461 7 1 6.4234 1.4443 1.2327 8 6 5.6852 1.4373 -0.6956 9 6 4.3783 1.4422 -1.1426 10 6 3.9341 1.4410 -2.5468 11 8 2.7474 1.4351 -2.8088 12 8 4.8435 1.4410 -3.5412 13 6 4.3338 1.4335 -4.9008 14 6 5.4878 1.4352 -5.8699 15 8 6.6278 1.4416 -5.4555 16 7 5.2533 1.4287 -7.1971 17 6 6.3031 1.4308 -8.0787 18 1 7.3182 1.4373 -7.7098 19 6 6.0613 1.4245 -9.4470 20 7 4.8263 1.4171 -9.8960 21 14 7.4918 1.4266 -10.6483 22 1 8.3267 0.2189 -10.4261 23 1 6.9705 1.4197 -12.0388 24 1 8.3154 2.6438 -10.4352 25 1 -0.3633 0.5140 0.8899 26 1 -0.3632 0.5137 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5140 -0.8898 29 1 1.8933 -0.5137 0.8901 30 1 1.6766 1.9564 0.8898 31 1 1.6767 1.9562 -0.8901 32 1 6.5717 1.4322 -1.3125 33 1 3.7289 0.5404 -5.0571 34 1 3.7214 2.3204 -5.0640 35 1 4.3417 1.4232 -7.5284 36 1 4.6575 1.4131 -10.8511 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318330357.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:11 Heat of formation + Delta-G solvation = -86.734436 kcal Electronic energy + Delta-G solvation = -21150.333381 eV Core-core repulsion = 17634.957557 eV Total energy + Delta-G solvation = -3515.375824 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.57179 -41.12596 -39.88303 -37.39468 -36.13200 -35.97023 -33.39059 -32.67430 -31.90225 -29.81081 -28.09281 -26.62215 -24.59278 -22.96986 -21.98936 -21.36087 -20.64135 -20.03365 -19.38142 -18.32501 -17.63725 -17.61618 -16.94426 -16.29279 -16.10116 -16.03410 -15.72215 -15.41007 -15.37165 -14.65840 -14.37786 -13.97726 -13.82813 -13.55104 -13.51126 -12.93268 -12.91006 -12.50431 -12.46255 -12.18665 -12.11822 -12.10884 -11.78836 -11.69095 -11.53910 -11.32576 -10.61010 -10.46980 -10.09294 -10.03319 -8.49934 -6.00451 0.29217 0.90021 1.34979 1.39534 1.45851 1.56456 1.82489 1.90016 2.08703 2.32423 3.10874 3.15954 3.37318 3.64402 3.93776 4.08649 4.18997 4.21595 4.22653 4.26651 4.31565 4.40925 4.58497 4.83140 4.86547 5.00149 5.09784 5.28256 5.33667 5.38752 5.42947 5.49500 5.91630 6.15098 6.40729 6.49480 6.78904 7.05288 7.43101 7.96178 8.66935 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.028691 B = 0.003251 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.689773 B = 8611.353349 C = 9463.751730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C -0.047 4.047 4 C 0.138 3.862 5 N -0.312 5.312 6 N -0.441 5.441 7 H 0.464 0.536 8 C 0.161 3.839 9 C -0.310 4.310 10 C 0.539 3.461 11 O -0.531 6.531 12 O -0.340 6.340 13 C 0.075 3.925 14 C 0.439 3.561 15 O -0.616 6.616 16 N -0.559 5.559 17 C -0.338 4.338 18 H 0.086 0.914 19 C -0.009 4.009 20 N -0.916 5.916 21 Si 0.997 3.003 22 H -0.269 1.269 23 H -0.271 1.271 24 H -0.270 1.270 25 H 0.067 0.933 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.046 0.954 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.221 0.779 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.400 0.600 36 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.124 -0.794 18.945 19.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C -0.086 4.086 4 C -0.030 4.030 5 N -0.134 5.134 6 N -0.147 5.147 7 H 0.314 0.686 8 C 0.006 3.994 9 C -0.323 4.323 10 C 0.385 3.615 11 O -0.422 6.422 12 O -0.256 6.256 13 C -0.003 4.003 14 C 0.226 3.774 15 O -0.503 6.503 16 N -0.196 5.196 17 C -0.467 4.467 18 H 0.104 0.896 19 C -0.210 4.210 20 N -0.556 5.556 21 Si 0.820 3.180 22 H -0.195 1.195 23 H -0.195 1.195 24 H -0.195 1.195 25 H 0.087 0.913 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.238 0.762 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.234 0.766 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.753 -0.784 20.217 20.577 hybrid contribution 0.498 0.015 -1.721 1.791 sum -3.254 -0.768 18.496 18.796 Atomic orbital electron populations 1.21721 0.93936 1.02356 1.02362 1.21335 0.97184 0.94638 1.01447 1.20291 0.84604 0.99290 1.04408 1.22665 0.97789 0.94445 0.88075 1.77130 0.87257 1.26975 1.22021 1.46162 1.07789 1.55151 1.05564 0.68637 1.23777 0.99382 0.90631 0.85619 1.19431 0.94334 1.28508 0.90062 1.20389 0.83641 0.72020 0.85467 1.90775 1.18152 1.48401 1.84861 1.86562 1.39499 1.84215 1.15287 1.22470 0.94516 1.05258 0.78027 1.20086 0.90016 0.83951 0.83388 1.90505 1.24608 1.56726 1.78428 1.41735 1.09934 1.64121 1.03829 1.19696 0.88973 1.50656 0.87399 0.89635 1.26119 1.00398 0.95714 0.98736 1.69673 1.20400 1.49227 1.16314 0.84924 0.77290 0.79143 0.76617 1.19450 1.19529 1.19471 0.91350 0.92892 0.91933 0.93532 0.91666 0.88716 0.89427 0.76220 0.87737 0.87715 0.76600 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.91 71.98 0.71 -1.74 16 2 C -0.11 -2.21 5.92 30.59 0.18 -2.03 16 3 C -0.05 -1.03 5.25 29.85 0.16 -0.87 16 4 C 0.14 3.43 6.52 43.53 0.28 3.71 16 5 N -0.31 -6.98 12.63 -46.65 -0.59 -7.57 16 6 N -0.44 -7.12 7.28 -56.29 -0.41 -7.53 16 7 H 0.46 3.59 8.96 -213.43 -1.91 1.68 16 8 C 0.16 3.17 11.86 84.30 1.00 4.17 16 9 C -0.31 -8.32 6.13 -20.16 -0.12 -8.44 16 10 C 0.54 17.58 7.95 70.20 0.56 18.14 16 11 O -0.53 -18.51 14.72 19.74 0.29 -18.22 16 12 O -0.34 -12.43 9.58 -50.26 -0.48 -12.91 16 13 C 0.07 2.80 5.95 71.23 0.42 3.22 16 14 C 0.44 21.09 7.86 87.66 0.69 21.78 16 15 O -0.62 -34.02 16.08 15.73 0.25 -33.77 16 16 N -0.56 -28.39 5.29 -306.99 -1.62 -30.01 16 17 C -0.34 -18.78 9.68 84.04 0.81 -17.97 16 18 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 19 C -0.01 -0.47 5.50 84.93 0.47 0.00 16 20 N -0.92 -48.48 13.05 21.66 0.28 -48.19 16 21 Si 1.00 41.63 29.55 68.60 2.03 43.65 16 22 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 23 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 24 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 25 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.09 2.19 6.56 -2.38 -0.02 2.17 16 32 H 0.22 3.35 8.06 -2.91 -0.02 3.32 16 33 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 34 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 35 H 0.40 19.21 7.90 -92.71 -0.73 18.48 16 36 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -71.05 324.11 3.40 -67.65 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: -1.51 Total: 26.94 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: 5.16 Total: 19.96 kcal Atomic # 7 Polarization: -90.96 SS G_CDS: -2.34 Total: -93.30 kcal Atomic # 8 Polarization: -64.96 SS G_CDS: 0.06 Total: -64.90 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.65 kcal Total: -71.05 3.40 -67.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318330357.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.088 kcal (2) G-P(sol) polarization free energy of solvation -71.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds