Wall clock time and date at job start Tue Mar 31 2020 05:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31297 * 1 3 3 Si 1.86801 * 119.99638 * 2 1 4 4 H 1.48501 * 109.46921 * 269.71795 * 3 2 1 5 5 H 1.48496 * 109.47586 * 29.72132 * 3 2 1 6 6 H 1.48507 * 109.46923 * 149.72422 * 3 2 1 7 7 C 1.38985 * 119.99820 * 179.71694 * 2 1 3 8 8 H 1.08000 * 119.99324 * 180.02562 * 7 2 1 9 9 N 1.37320 * 120.00026 * 0.02562 * 7 2 1 10 10 C 1.36494 * 126.06481 * 179.71555 * 9 7 2 11 11 C 1.35685 * 107.50342 * 179.83861 * 10 9 7 12 12 N 1.40597 * 126.08070 * 180.12499 * 11 10 9 13 13 C 1.34776 * 120.00252 * 180.32547 * 12 11 10 14 14 O 1.21305 * 119.99536 * 359.97438 * 13 12 11 15 15 C 1.50693 * 120.00099 * 180.02562 * 13 12 11 16 16 O 1.42906 * 109.46917 * 179.97438 * 15 13 12 17 17 C 1.42902 * 113.99548 * 179.97438 * 16 15 13 18 18 H 1.08998 * 110.43818 * 328.90795 * 17 16 15 19 19 C 1.54813 * 110.48319 * 206.22013 * 17 16 15 20 20 C 1.55001 * 102.09154 * 220.44345 * 19 17 16 21 21 O 1.44381 * 103.48941 * 37.02511 * 20 19 17 22 22 C 1.43739 * 106.97443 * 319.93999 * 21 20 19 23 23 C 1.40639 * 107.83692 * 0.41734 * 11 10 9 24 24 N 1.30907 * 108.39095 * 359.74146 * 23 11 10 25 25 H 0.97000 * 120.00360 * 0.27808 * 1 2 3 26 26 H 1.08003 * 126.24891 * 359.97438 * 10 9 7 27 27 H 0.97004 * 120.00147 * 0.32533 * 12 11 10 28 28 H 1.09001 * 109.46876 * 299.99412 * 15 13 12 29 29 H 1.08999 * 109.47250 * 59.99781 * 15 13 12 30 30 H 1.09001 * 110.91225 * 338.64468 * 19 17 16 31 31 H 1.09003 * 110.90797 * 102.24786 * 19 17 16 32 32 H 1.08993 * 110.61956 * 278.52146 * 20 19 17 33 33 H 1.09007 * 110.61570 * 155.52445 * 20 19 17 34 34 H 1.08999 * 109.87892 * 267.09034 * 22 21 20 35 35 H 1.09001 * 110.00320 * 146.00952 * 22 21 20 36 36 H 1.08002 * 125.80952 * 179.70381 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.5003 2.0430 -1.4001 5 1 1.4414 2.6544 0.6941 6 1 3.5416 1.4420 0.7059 7 6 2.0079 -1.2037 0.0059 8 1 3.0879 -1.2036 0.0064 9 7 1.3212 -2.3929 0.0113 10 6 1.8749 -3.6404 0.0119 11 6 0.8578 -4.5384 0.0215 12 7 0.9890 -5.9382 0.0279 13 6 -0.1101 -6.7181 0.0307 14 8 -1.2127 -6.2123 0.0282 15 6 0.0306 -8.2185 0.0381 16 8 -1.2664 -8.8185 0.0405 17 6 -1.2456 -10.2474 0.0469 18 1 -0.3654 -10.6176 -0.4787 19 6 -2.5385 -10.8108 -0.5916 20 6 -2.8665 -12.0057 0.3396 21 8 -2.4952 -11.5239 1.6491 22 6 -1.2749 -10.7807 1.4923 23 6 -0.3512 -3.8198 0.0172 24 7 -0.0716 -2.5410 0.0110 25 1 -0.4851 0.8400 -0.0041 26 1 2.9301 -3.8708 0.0079 27 1 1.8707 -6.3427 0.0302 28 1 0.5768 -8.5365 -0.8499 29 1 0.5754 -8.5279 0.9300 30 1 -3.3378 -10.0700 -0.5702 31 1 -2.3528 -11.1512 -1.6104 32 1 -2.2718 -12.8780 0.0687 33 1 -3.9307 -12.2392 0.3040 34 1 -0.4189 -11.4333 1.6639 35 1 -1.2526 -9.9480 2.1952 36 1 -1.3419 -4.2499 0.0181 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318936423.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:52 Heat of formation + Delta-G solvation = -33.110753 kcal Electronic energy + Delta-G solvation = -21111.770941 eV Core-core repulsion = 17598.720414 eV Total energy + Delta-G solvation = -3513.050527 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.10106 -39.72337 -38.60729 -36.93661 -34.19210 -33.15861 -31.70574 -30.28654 -29.28629 -28.46943 -26.87578 -24.68174 -23.03684 -21.57647 -21.13861 -20.41122 -19.40993 -17.68575 -17.41213 -16.95325 -16.40641 -15.97952 -15.56720 -15.44013 -15.18961 -14.91408 -14.14250 -13.91716 -13.66150 -13.19811 -12.98012 -12.90003 -12.52654 -12.43576 -11.94190 -11.71522 -11.67023 -11.41628 -11.25444 -11.03006 -10.93089 -10.53361 -10.20355 -10.14604 -9.68558 -9.16437 -9.13631 -8.79698 -8.05309 -6.70654 -6.54953 -4.22406 2.80781 2.92532 3.02858 3.06167 3.10674 3.63023 3.67336 3.80921 4.02857 4.21501 4.41508 4.56030 4.63769 4.72819 4.83326 4.92713 5.02560 5.05291 5.15956 5.18121 5.25999 5.37838 5.42057 5.59728 5.75910 6.23898 6.44045 6.51144 6.83731 6.93678 6.96728 7.14585 7.24672 7.86495 8.17062 8.27833 8.63887 8.84919 9.38443 9.67699 10.41057 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.065071 B = 0.002709 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.195235 B =10333.625509 C =10528.135688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.323 4.323 8 H 0.116 0.884 9 N -0.143 5.143 10 C -0.084 4.084 11 C -0.059 4.059 12 N -0.624 5.624 13 C 0.497 3.503 14 O -0.514 6.514 15 C 0.047 3.953 16 O -0.344 6.344 17 C 0.053 3.947 18 H 0.078 0.922 19 C -0.153 4.153 20 C 0.047 3.953 21 O -0.373 6.373 22 C 0.023 3.977 23 C -0.033 4.033 24 N -0.260 5.260 25 H 0.275 0.725 26 H 0.146 0.854 27 H 0.397 0.603 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.875 -19.543 -0.983 19.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.172 4.172 3 Si 0.759 3.241 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.456 4.456 8 H 0.134 0.866 9 N 0.090 4.910 10 C -0.235 4.235 11 C -0.165 4.165 12 N -0.268 5.268 13 C 0.281 3.719 14 O -0.389 6.389 15 C -0.034 4.034 16 O -0.261 6.261 17 C -0.005 4.005 18 H 0.096 0.904 19 C -0.190 4.190 20 C -0.030 4.030 21 O -0.292 6.292 22 C -0.054 4.054 23 C -0.209 4.209 24 N -0.091 5.091 25 H 0.086 0.914 26 H 0.163 0.837 27 H 0.229 0.771 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.115 0.885 34 H 0.082 0.918 35 H 0.114 0.886 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 1.087 -17.764 -0.780 17.814 hybrid contribution 1.785 -0.523 -0.217 1.872 sum 2.872 -18.286 -0.996 18.537 Atomic orbital electron populations 1.70219 1.06131 1.28006 1.35244 1.25650 0.95710 1.00285 0.95515 0.85825 0.79369 0.79965 0.78957 1.19598 1.20081 1.18820 1.19864 0.91642 0.80549 1.53505 0.86618 1.44556 1.04066 1.03300 1.39104 1.21243 0.96788 0.85374 1.20091 1.17234 0.94345 0.80985 1.23915 1.42343 1.07872 1.04575 1.72004 1.19903 0.84954 0.87671 0.79334 1.90638 1.25687 1.74427 1.48114 1.22251 0.86561 0.92401 1.02152 1.88151 1.25853 1.17365 1.94772 1.23597 0.99274 0.82138 0.95538 0.90377 1.23226 0.97898 0.98319 0.99601 1.23555 1.01515 0.95535 0.82372 1.88911 1.41127 1.70872 1.28270 1.23779 0.87692 0.96276 0.97692 1.24130 0.98088 0.90752 1.07880 1.78265 0.90090 1.15059 1.25705 0.91438 0.83670 0.77051 0.90432 0.90544 0.88650 0.89412 0.92018 0.88471 0.91838 0.88645 0.80716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.70 11.81 55.49 0.66 -21.05 16 2 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 3 Si 0.94 18.97 29.55 -169.99 -5.02 13.95 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.32 -8.58 10.25 -14.82 -0.15 -8.73 16 8 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 9 N -0.14 -3.94 3.74 -11.41 -0.04 -3.98 16 10 C -0.08 -1.97 11.49 -16.39 -0.19 -2.16 16 11 C -0.06 -1.38 6.90 -83.84 -0.58 -1.95 16 12 N -0.62 -10.86 5.47 -10.00 -0.05 -10.91 16 13 C 0.50 8.77 7.88 -10.99 -0.09 8.68 16 14 O -0.51 -11.67 13.65 -14.37 -0.20 -11.87 16 15 C 0.05 0.55 6.28 36.00 0.23 0.78 16 16 O -0.34 -4.74 9.49 -55.14 -0.52 -5.27 16 17 C 0.05 0.52 3.51 -25.20 -0.09 0.43 16 18 H 0.08 0.54 7.86 -51.93 -0.41 0.14 16 19 C -0.15 -1.34 6.90 -24.72 -0.17 -1.51 16 20 C 0.05 0.38 7.72 38.21 0.29 0.67 16 21 O -0.37 -4.28 11.52 -35.23 -0.41 -4.69 16 22 C 0.02 0.22 7.52 37.73 0.28 0.51 16 23 C -0.03 -0.89 10.85 -17.04 -0.18 -1.07 16 24 N -0.26 -7.68 10.40 30.80 0.32 -7.36 16 25 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 26 H 0.15 2.80 8.06 -52.48 -0.42 2.38 16 27 H 0.40 5.01 8.83 -40.82 -0.36 4.65 16 28 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.09 1.01 8.09 -51.93 -0.42 0.59 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.10 1.04 7.97 -51.93 -0.41 0.63 16 36 H 0.18 4.72 5.92 -52.49 -0.31 4.41 16 LS Contribution 313.41 15.07 4.72 4.72 Total: -1.00 -36.11 313.41 -5.70 -41.81 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -4.42 Total: 7.92 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -0.74 Total: -3.28 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 0.88 Total: -43.30 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -1.13 Total: -21.83 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.02 Total: 13.95 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -36.11 -5.70 -41.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318936423.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.702 kcal (2) G-P(sol) polarization free energy of solvation -36.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds