Wall clock time and date at job start Tue Mar 31 2020 05:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31297 * 1 3 3 Si 1.86801 * 119.99638 * 2 1 4 4 H 1.48501 * 109.46921 * 269.71795 * 3 2 1 5 5 H 1.48496 * 109.47586 * 29.72132 * 3 2 1 6 6 H 1.48507 * 109.46923 * 149.72422 * 3 2 1 7 7 C 1.38985 * 119.99820 * 179.71694 * 2 1 3 8 8 H 1.08000 * 119.99324 * 180.02562 * 7 2 1 9 9 N 1.37320 * 120.00026 * 0.02562 * 7 2 1 10 10 C 1.36494 * 126.06481 * 179.71555 * 9 7 2 11 11 C 1.35685 * 107.50342 * 179.83861 * 10 9 7 12 12 N 1.40597 * 126.08070 * 180.12499 * 11 10 9 13 13 C 1.34776 * 120.00252 * 180.32547 * 12 11 10 14 14 O 1.21305 * 119.99536 * 359.97438 * 13 12 11 15 15 C 1.50693 * 120.00099 * 180.02562 * 13 12 11 16 16 O 1.42906 * 109.46917 * 179.97438 * 15 13 12 17 17 C 1.42902 * 113.99548 * 179.97438 * 16 15 13 18 18 H 1.08998 * 110.43818 * 328.90795 * 17 16 15 19 19 C 1.54813 * 110.48319 * 206.22013 * 17 16 15 20 20 C 1.55001 * 102.09154 * 220.44345 * 19 17 16 21 21 O 1.44381 * 103.48941 * 37.02511 * 20 19 17 22 22 C 1.43739 * 106.97443 * 319.93999 * 21 20 19 23 23 C 1.40639 * 107.83692 * 0.41734 * 11 10 9 24 24 N 1.30907 * 108.39095 * 359.74146 * 23 11 10 25 25 H 0.97000 * 120.00360 * 0.27808 * 1 2 3 26 26 H 1.08003 * 126.24891 * 359.97438 * 10 9 7 27 27 H 0.97004 * 120.00147 * 0.32533 * 12 11 10 28 28 H 1.09001 * 109.46876 * 299.99412 * 15 13 12 29 29 H 1.08999 * 109.47250 * 59.99781 * 15 13 12 30 30 H 1.09001 * 110.91225 * 338.64468 * 19 17 16 31 31 H 1.09003 * 110.90797 * 102.24786 * 19 17 16 32 32 H 1.08993 * 110.61956 * 278.52146 * 20 19 17 33 33 H 1.09007 * 110.61570 * 155.52445 * 20 19 17 34 34 H 1.08999 * 109.87892 * 267.09034 * 22 21 20 35 35 H 1.09001 * 110.00320 * 146.00952 * 22 21 20 36 36 H 1.08002 * 125.80952 * 179.70381 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.5003 2.0430 -1.4001 5 1 1.4414 2.6544 0.6941 6 1 3.5416 1.4420 0.7059 7 6 2.0079 -1.2037 0.0059 8 1 3.0879 -1.2036 0.0064 9 7 1.3212 -2.3929 0.0113 10 6 1.8749 -3.6404 0.0119 11 6 0.8578 -4.5384 0.0215 12 7 0.9890 -5.9382 0.0279 13 6 -0.1101 -6.7181 0.0307 14 8 -1.2127 -6.2123 0.0282 15 6 0.0306 -8.2185 0.0381 16 8 -1.2664 -8.8185 0.0405 17 6 -1.2456 -10.2474 0.0469 18 1 -0.3654 -10.6176 -0.4787 19 6 -2.5385 -10.8108 -0.5916 20 6 -2.8665 -12.0057 0.3396 21 8 -2.4952 -11.5239 1.6491 22 6 -1.2749 -10.7807 1.4923 23 6 -0.3512 -3.8198 0.0172 24 7 -0.0716 -2.5410 0.0110 25 1 -0.4851 0.8400 -0.0041 26 1 2.9301 -3.8708 0.0079 27 1 1.8707 -6.3427 0.0302 28 1 0.5768 -8.5365 -0.8499 29 1 0.5754 -8.5279 0.9300 30 1 -3.3378 -10.0700 -0.5702 31 1 -2.3528 -11.1512 -1.6104 32 1 -2.2718 -12.8780 0.0687 33 1 -3.9307 -12.2392 0.3040 34 1 -0.4189 -11.4333 1.6639 35 1 -1.2526 -9.9480 2.1952 36 1 -1.3419 -4.2499 0.0181 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318936423.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:51 Heat of formation + Delta-G solvation = -61.131434 kcal Electronic energy + Delta-G solvation = -21112.986008 eV Core-core repulsion = 17598.720414 eV Total energy + Delta-G solvation = -3514.265595 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.71752 -40.75904 -40.04920 -37.92089 -35.90914 -34.97387 -32.51179 -32.22276 -30.41012 -29.62760 -28.30243 -26.54015 -23.73140 -22.92453 -22.29184 -22.04361 -21.20362 -19.35543 -18.32158 -18.14678 -17.48921 -17.33473 -16.92530 -16.68314 -16.42561 -15.96263 -15.60458 -15.42965 -15.03052 -14.79687 -14.68844 -13.86885 -13.54903 -13.46189 -13.28208 -13.12378 -12.92120 -12.85006 -12.70617 -12.36196 -12.08561 -11.84612 -11.68835 -11.01900 -10.92937 -10.83474 -10.63099 -10.44077 -10.10656 -8.53395 -8.46632 -6.24422 1.21813 1.40041 1.51976 1.58394 1.81105 1.86434 2.16570 2.50668 2.79085 2.97521 3.09376 3.09765 3.52306 3.85114 3.90615 4.05634 4.21358 4.23245 4.34939 4.39592 4.44568 4.58819 4.61520 4.76185 4.81777 4.91987 5.00277 5.06350 5.09031 5.29561 5.46445 5.84146 5.96008 6.13378 6.32647 6.73669 6.77694 7.41072 7.48073 7.68309 8.52910 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.065071 B = 0.002709 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.195235 B =10333.625509 C =10528.135688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C -0.009 4.009 3 Si 1.021 2.979 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.242 1.242 7 C -0.353 4.353 8 H 0.144 0.856 9 N -0.169 5.169 10 C -0.078 4.078 11 C -0.044 4.044 12 N -0.612 5.612 13 C 0.490 3.510 14 O -0.573 6.573 15 C 0.057 3.943 16 O -0.385 6.385 17 C 0.050 3.950 18 H 0.117 0.883 19 C -0.156 4.156 20 C 0.046 3.954 21 O -0.406 6.406 22 C 0.020 3.980 23 C -0.064 4.064 24 N -0.312 5.312 25 H 0.276 0.724 26 H 0.193 0.807 27 H 0.424 0.576 28 H 0.121 0.879 29 H 0.114 0.886 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.186 -21.590 -1.433 22.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.220 4.220 3 Si 0.839 3.161 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.165 1.165 7 C -0.484 4.484 8 H 0.161 0.839 9 N 0.062 4.938 10 C -0.228 4.228 11 C -0.150 4.150 12 N -0.259 5.259 13 C 0.278 3.722 14 O -0.451 6.451 15 C -0.022 4.022 16 O -0.304 6.304 17 C -0.008 4.008 18 H 0.135 0.865 19 C -0.193 4.193 20 C -0.030 4.030 21 O -0.326 6.326 22 C -0.057 4.057 23 C -0.239 4.239 24 N -0.144 5.144 25 H 0.086 0.914 26 H 0.210 0.790 27 H 0.262 0.738 28 H 0.139 0.861 29 H 0.132 0.868 30 H 0.083 0.917 31 H 0.131 0.869 32 H 0.108 0.892 33 H 0.121 0.879 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 4.452 -19.886 -1.231 20.415 hybrid contribution 0.711 -0.083 -0.079 0.720 sum 5.163 -19.969 -1.310 20.667 Atomic orbital electron populations 1.70413 1.08527 1.29090 1.37458 1.26927 0.96468 1.04493 0.94155 0.84573 0.78288 0.73944 0.79259 1.18842 1.20387 1.16539 1.20645 0.93015 0.80823 1.53934 0.83911 1.44868 1.03564 1.04952 1.40403 1.22038 0.98894 0.84021 1.17870 1.17319 0.92648 0.83822 1.21221 1.42272 1.09722 1.02163 1.71725 1.21164 0.83781 0.90365 0.76917 1.90625 1.28086 1.76072 1.50334 1.22310 0.86690 0.87284 1.05879 1.88114 1.27232 1.19911 1.95155 1.23878 1.01019 0.80004 0.95871 0.86486 1.23277 0.96874 0.97913 1.01250 1.23753 1.02528 0.95946 0.80784 1.88869 1.42132 1.71332 1.30280 1.23877 0.88143 0.96249 0.97444 1.24136 0.99090 0.91101 1.09612 1.78158 0.92195 1.16527 1.27535 0.91448 0.79015 0.73804 0.86130 0.86797 0.91663 0.86915 0.89249 0.87942 0.88869 0.90683 0.82108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.56 11.81 21.66 0.26 -48.31 16 2 C -0.01 -0.48 5.50 84.95 0.47 -0.01 16 3 Si 1.02 38.74 29.55 68.60 2.03 40.77 16 4 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 5 H -0.28 -10.56 7.11 99.48 0.71 -9.85 16 6 H -0.24 -8.26 7.11 99.48 0.71 -7.55 16 7 C -0.35 -18.73 10.25 84.01 0.86 -17.86 16 8 H 0.14 6.47 7.83 -2.91 -0.02 6.45 16 9 N -0.17 -9.44 3.74 -190.01 -0.71 -10.15 16 10 C -0.08 -3.56 11.49 83.38 0.96 -2.61 16 11 C -0.04 -2.02 6.90 37.73 0.26 -1.76 16 12 N -0.61 -20.03 5.47 -303.93 -1.66 -21.70 16 13 C 0.49 16.73 7.88 87.65 0.69 17.42 16 14 O -0.57 -26.85 13.65 15.93 0.22 -26.63 16 15 C 0.06 1.17 6.28 71.23 0.45 1.61 16 16 O -0.39 -10.00 9.49 -129.94 -1.23 -11.24 16 17 C 0.05 0.83 3.51 31.58 0.11 0.94 16 18 H 0.12 1.02 7.86 -2.39 -0.02 1.00 16 19 C -0.16 -2.47 6.90 31.90 0.22 -2.25 16 20 C 0.05 0.65 7.72 72.67 0.56 1.21 16 21 O -0.41 -8.88 11.52 -148.98 -1.72 -10.60 16 22 C 0.02 0.35 7.52 72.35 0.54 0.89 16 23 C -0.06 -3.62 10.85 85.42 0.93 -2.69 16 24 N -0.31 -19.27 10.40 -56.47 -0.59 -19.86 16 25 H 0.28 14.91 8.31 -92.71 -0.77 14.14 16 26 H 0.19 6.68 8.06 -2.91 -0.02 6.66 16 27 H 0.42 9.05 8.83 -92.71 -0.82 8.23 16 28 H 0.12 1.47 8.10 -2.39 -0.02 1.45 16 29 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.06 1.42 8.09 -2.39 -0.02 1.40 16 31 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 1.58 7.97 -2.39 -0.02 1.56 16 36 H 0.16 9.35 5.92 -2.91 -0.02 9.34 16 Total: -1.00 -86.16 313.41 2.93 -83.23 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: 0.30 Total: 29.59 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: 6.05 Total: -5.11 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -2.70 Total: -100.01 kcal Atomic # 8 Polarization: -45.73 SS G_CDS: -2.73 Total: -48.46 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.77 kcal Total: -86.16 2.93 -83.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318936423.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.097 kcal (2) G-P(sol) polarization free energy of solvation -86.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds