Wall clock time and date at job start Tue Mar 31 2020 05:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 5 5 N 1.30884 * 125.40778 * 264.69698 * 4 2 1 6 6 C 1.33281 * 109.70030 * 179.82887 * 5 4 2 7 7 C 1.36754 * 107.77613 * 0.43097 * 6 5 4 8 8 C 1.46583 * 126.85681 * 179.72572 * 7 6 5 9 9 O 1.21614 * 119.99982 * 0.02562 * 8 7 6 10 10 O 1.34876 * 120.00510 * 180.02562 * 8 7 6 11 11 C 1.45202 * 117.00476 * 179.97438 * 10 8 7 12 12 C 1.50693 * 109.46985 * 180.02562 * 11 10 8 13 13 O 1.21292 * 120.00323 * 359.97438 * 12 11 10 14 14 N 1.34782 * 119.99968 * 180.02562 * 12 11 10 15 15 C 1.37095 * 119.99930 * 179.97438 * 14 12 11 16 16 H 1.07995 * 120.00464 * 359.97438 * 15 14 12 17 17 C 1.38949 * 119.99470 * 179.97438 * 15 14 12 18 18 N 1.31411 * 120.00289 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99891 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47187 * 89.99827 * 19 17 15 21 21 H 1.48499 * 109.47425 * 210.00017 * 19 17 15 22 22 H 1.48508 * 109.47043 * 330.00033 * 19 17 15 23 23 N 1.34466 * 125.40989 * 85.00229 * 4 2 1 24 24 H 0.97005 * 126.47558 * 359.96610 * 23 4 2 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 30 30 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 32 32 H 1.08003 * 126.11424 * 180.20589 * 6 5 4 33 33 H 1.09002 * 109.47008 * 300.00533 * 11 10 8 34 34 H 1.09005 * 109.46504 * 60.00512 * 11 10 8 35 35 H 0.96998 * 119.99436 * 359.97438 * 14 12 11 36 36 H 0.97003 * 119.99785 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 2.3780 -1.9713 -1.2901 6 6 2.7707 -2.2715 -2.5278 7 6 2.6750 -1.1356 -3.2833 8 6 3.0079 -0.9936 -4.7037 9 8 3.4171 -1.9518 -5.3310 10 8 2.8605 0.1995 -5.3150 11 6 3.2100 0.2667 -6.7228 12 6 2.9829 1.6673 -7.2304 13 8 2.5670 2.5245 -6.4798 14 7 3.2410 1.9672 -8.5188 15 6 3.0340 3.2413 -8.9807 16 1 2.6637 4.0045 -8.3124 17 6 3.3006 3.5506 -10.3089 18 7 3.7507 2.6217 -11.1223 19 14 3.0192 5.2867 -10.9382 20 1 4.2596 6.0841 -10.7625 21 1 2.6612 5.2392 -12.3787 22 1 1.9130 5.9171 -10.1738 23 7 2.2020 -0.1481 -2.4401 24 1 2.0253 0.7760 -2.6763 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.6768 1.9562 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 3.1081 -3.2381 -2.8718 33 1 4.2593 0.0001 -6.8498 34 1 2.5876 -0.4294 -7.2852 35 1 3.5733 1.2816 -9.1191 36 1 3.9365 2.8376 -12.0495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320177242.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:54 Heat of formation + Delta-G solvation = -78.947732 kcal Electronic energy + Delta-G solvation = -21079.412042 eV Core-core repulsion = 17564.373875 eV Total energy + Delta-G solvation = -3515.038167 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.49989 -40.05447 -38.16731 -36.21153 -35.71360 -34.07093 -32.92334 -31.44939 -29.86024 -28.31651 -27.57387 -25.00959 -24.08152 -22.45570 -20.96801 -20.28728 -19.64845 -18.67402 -18.13264 -16.79488 -16.52028 -16.20863 -15.54265 -15.44610 -15.09978 -14.60127 -14.43951 -14.04466 -14.01773 -13.88366 -13.29497 -13.10066 -12.60060 -12.37326 -12.16182 -11.91802 -11.67498 -11.60919 -11.43158 -11.18189 -10.83434 -10.52609 -10.48722 -10.41904 -10.38402 -10.33776 -9.66641 -8.78757 -8.60704 -8.14622 -6.55521 -3.97957 0.98205 2.44832 2.51736 2.81484 3.04449 3.09039 3.19790 3.25508 3.66718 3.88345 4.07169 4.41467 4.59769 4.66596 4.82395 4.91824 5.09079 5.09487 5.20115 5.20590 5.38956 5.43829 5.46619 5.53160 5.62487 5.68605 5.80572 5.84882 5.97644 6.28633 6.43700 6.99773 7.42218 7.61044 7.74575 7.88683 8.41688 9.00887 9.32705 9.81987 10.61531 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.026309 B = 0.003232 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.039014 B = 8661.283927 C = 9557.684390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.015 4.015 3 C -0.158 4.158 4 C 0.252 3.748 5 N -0.495 5.495 6 C 0.080 3.920 7 C -0.069 4.069 8 C 0.538 3.462 9 O -0.499 6.499 10 O -0.330 6.330 11 C 0.063 3.937 12 C 0.437 3.563 13 O -0.580 6.580 14 N -0.550 5.550 15 C -0.304 4.304 16 H 0.106 0.894 17 C 0.026 3.974 18 N -0.895 5.895 19 Si 0.934 3.066 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.268 1.268 23 N -0.533 5.533 24 H 0.432 0.568 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.108 0.892 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.188 0.812 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.395 0.605 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.360 -5.895 17.812 19.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.035 4.035 3 C -0.216 4.216 4 C -0.012 4.012 5 N -0.215 5.215 6 C -0.074 4.074 7 C -0.184 4.184 8 C 0.382 3.618 9 O -0.387 6.387 10 O -0.245 6.245 11 C -0.014 4.014 12 C 0.222 3.778 13 O -0.464 6.464 14 N -0.187 5.187 15 C -0.433 4.433 16 H 0.124 0.876 17 C -0.177 4.177 18 N -0.536 5.536 19 Si 0.761 3.239 20 H -0.202 1.202 21 H -0.207 1.207 22 H -0.193 1.193 23 N -0.137 5.137 24 H 0.273 0.727 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.126 0.874 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.205 0.795 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.229 0.771 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.474 -6.113 18.482 19.774 hybrid contribution 0.183 1.245 -1.882 2.264 sum -3.291 -4.867 16.601 17.610 Atomic orbital electron populations 1.21874 0.92915 1.03014 1.02693 1.19759 0.96490 0.95182 0.92070 1.21959 1.01981 0.94433 1.03190 1.23433 1.00285 0.90090 0.87436 1.70234 1.18584 1.11904 1.20752 1.22717 0.99055 0.97610 0.88056 1.20104 1.16634 0.91581 0.90055 1.19624 0.74997 0.81562 0.85622 1.90904 1.43090 1.39738 1.64991 1.86593 1.78323 1.32973 1.26604 1.22792 1.02089 0.98992 0.77531 1.19282 0.86395 0.88203 0.83927 1.90544 1.50672 1.49096 1.56123 1.41699 1.57087 1.12287 1.07603 1.19722 1.42002 0.86987 0.94637 0.87608 1.25325 0.96594 1.00017 0.95745 1.69612 1.43992 1.33642 1.06316 0.85792 0.78971 0.81287 0.77864 1.20211 1.20746 1.19267 1.43259 1.48188 1.13140 1.09148 0.72686 0.92350 0.91120 0.91638 0.87429 0.90681 0.91750 0.92255 0.79477 0.89250 0.89245 0.77083 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.18 37.16 0.34 -0.63 16 2 C -0.01 -0.11 3.39 -91.78 -0.31 -0.42 16 3 C -0.16 -1.01 8.93 37.15 0.33 -0.68 16 4 C 0.25 2.77 6.84 -155.62 -1.07 1.70 16 5 N -0.50 -6.36 11.20 -10.57 -0.12 -6.48 16 6 C 0.08 1.05 11.66 -17.46 -0.20 0.84 16 7 C -0.07 -0.97 7.13 -82.17 -0.59 -1.56 16 8 C 0.54 8.86 7.93 34.10 0.27 9.13 16 9 O -0.50 -8.86 16.70 -19.35 -0.32 -9.18 16 10 O -0.33 -6.06 9.77 -47.66 -0.47 -6.52 16 11 C 0.06 1.19 5.96 36.00 0.21 1.40 16 12 C 0.44 10.32 7.86 -10.99 -0.09 10.24 16 13 O -0.58 -15.66 16.08 -14.11 -0.23 -15.89 16 14 N -0.55 -13.67 5.29 -10.97 -0.06 -13.73 16 15 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 16 H 0.11 3.00 7.16 -52.49 -0.38 2.62 16 17 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 18 N -0.90 -23.73 13.05 55.50 0.72 -23.01 16 19 Si 0.93 20.39 29.55 -169.99 -5.02 15.37 16 20 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 23 N -0.53 -6.36 5.94 -7.04 -0.04 -6.40 16 24 H 0.43 4.69 8.12 -40.82 -0.33 4.36 16 25 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.39 7.40 -51.93 -0.38 0.01 16 32 H 0.19 2.08 8.06 -52.48 -0.42 1.66 16 33 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 35 H 0.40 9.33 7.90 -40.82 -0.32 9.00 16 36 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 325.02 15.07 4.90 4.90 Total: -1.00 -32.44 325.02 -6.32 -38.77 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -4.35 Total: 10.00 kcal Atomic # 6 Polarization: 13.52 SS G_CDS: -1.33 Total: 12.18 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: 0.51 Total: -49.62 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -1.02 Total: -31.60 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.44 -6.32 -38.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320177242.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.182 kcal (2) G-P(sol) polarization free energy of solvation -32.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds