Wall clock time and date at job start Tue Mar 31 2020 05:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 5 5 N 1.30884 * 125.40778 * 264.69698 * 4 2 1 6 6 C 1.33281 * 109.70030 * 179.82887 * 5 4 2 7 7 C 1.36754 * 107.77613 * 0.43097 * 6 5 4 8 8 C 1.46583 * 126.85681 * 179.72572 * 7 6 5 9 9 O 1.21614 * 119.99982 * 0.02562 * 8 7 6 10 10 O 1.34876 * 120.00510 * 180.02562 * 8 7 6 11 11 C 1.45202 * 117.00476 * 179.97438 * 10 8 7 12 12 C 1.50693 * 109.46985 * 180.02562 * 11 10 8 13 13 O 1.21292 * 120.00323 * 359.97438 * 12 11 10 14 14 N 1.34782 * 119.99968 * 180.02562 * 12 11 10 15 15 C 1.37095 * 119.99930 * 179.97438 * 14 12 11 16 16 H 1.07995 * 120.00464 * 359.97438 * 15 14 12 17 17 C 1.38949 * 119.99470 * 179.97438 * 15 14 12 18 18 N 1.31411 * 120.00289 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99891 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47187 * 89.99827 * 19 17 15 21 21 H 1.48499 * 109.47425 * 210.00017 * 19 17 15 22 22 H 1.48508 * 109.47043 * 330.00033 * 19 17 15 23 23 N 1.34466 * 125.40989 * 85.00229 * 4 2 1 24 24 H 0.97005 * 126.47558 * 359.96610 * 23 4 2 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 30 30 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 32 32 H 1.08003 * 126.11424 * 180.20589 * 6 5 4 33 33 H 1.09002 * 109.47008 * 300.00533 * 11 10 8 34 34 H 1.09005 * 109.46504 * 60.00512 * 11 10 8 35 35 H 0.96998 * 119.99436 * 359.97438 * 14 12 11 36 36 H 0.97003 * 119.99785 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 2.3780 -1.9713 -1.2901 6 6 2.7707 -2.2715 -2.5278 7 6 2.6750 -1.1356 -3.2833 8 6 3.0079 -0.9936 -4.7037 9 8 3.4171 -1.9518 -5.3310 10 8 2.8605 0.1995 -5.3150 11 6 3.2100 0.2667 -6.7228 12 6 2.9829 1.6673 -7.2304 13 8 2.5670 2.5245 -6.4798 14 7 3.2410 1.9672 -8.5188 15 6 3.0340 3.2413 -8.9807 16 1 2.6637 4.0045 -8.3124 17 6 3.3006 3.5506 -10.3089 18 7 3.7507 2.6217 -11.1223 19 14 3.0192 5.2867 -10.9382 20 1 4.2596 6.0841 -10.7625 21 1 2.6612 5.2392 -12.3787 22 1 1.9130 5.9171 -10.1738 23 7 2.2020 -0.1481 -2.4401 24 1 2.0253 0.7760 -2.6763 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.6768 1.9562 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 3.1081 -3.2381 -2.8718 33 1 4.2593 0.0001 -6.8498 34 1 2.5876 -0.4294 -7.2852 35 1 3.5733 1.2816 -9.1191 36 1 3.9365 2.8376 -12.0495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320177242.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:53 Heat of formation + Delta-G solvation = -100.237440 kcal Electronic energy + Delta-G solvation = -21080.335233 eV Core-core repulsion = 17564.373875 eV Total energy + Delta-G solvation = -3515.961358 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.48211 -41.44518 -40.01996 -37.61310 -36.39253 -36.06907 -33.91322 -33.44801 -31.00234 -29.80440 -28.09262 -26.77800 -25.27250 -23.42997 -22.00550 -21.49438 -21.17780 -20.10905 -19.83964 -18.11956 -17.88764 -17.79163 -16.94280 -16.51363 -16.40768 -15.95882 -15.75646 -15.56913 -15.21205 -14.81034 -14.72544 -14.08040 -13.82277 -13.77288 -13.58186 -13.07362 -12.96093 -12.55976 -12.50271 -12.18004 -12.16746 -12.13120 -11.98017 -11.91833 -11.60589 -11.44659 -11.36478 -10.56430 -10.15053 -9.79522 -8.55012 -6.05987 -0.11573 1.14975 1.33938 1.42543 1.47298 1.55250 1.79838 1.82890 1.94574 2.27643 2.96688 3.10651 3.13069 3.58483 3.75497 3.97712 4.06983 4.09549 4.10777 4.17166 4.22284 4.44777 4.60872 4.71871 4.87488 4.92437 5.06026 5.09567 5.26753 5.31690 5.33541 5.34424 5.85457 6.08878 6.36852 6.47653 6.69254 6.99548 7.36061 7.88771 8.61906 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.026309 B = 0.003232 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.039014 B = 8661.283927 C = 9557.684390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.014 4.014 3 C -0.156 4.156 4 C 0.267 3.733 5 N -0.515 5.515 6 C 0.090 3.910 7 C -0.096 4.096 8 C 0.543 3.457 9 O -0.516 6.516 10 O -0.344 6.344 11 C 0.073 3.927 12 C 0.436 3.564 13 O -0.618 6.618 14 N -0.555 5.555 15 C -0.340 4.340 16 H 0.085 0.915 17 C -0.008 4.008 18 N -0.914 5.914 19 Si 0.998 3.002 20 H -0.269 1.269 21 H -0.270 1.270 22 H -0.270 1.270 23 N -0.533 5.533 24 H 0.436 0.564 25 H 0.051 0.949 26 H 0.094 0.906 27 H 0.057 0.943 28 H 0.120 0.880 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.203 0.797 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.400 0.600 36 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.608 -5.730 18.689 19.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.034 4.034 3 C -0.214 4.214 4 C 0.002 3.998 5 N -0.235 5.235 6 C -0.066 4.066 7 C -0.210 4.210 8 C 0.389 3.611 9 O -0.405 6.405 10 O -0.259 6.259 11 C -0.004 4.004 12 C 0.223 3.777 13 O -0.505 6.505 14 N -0.193 5.193 15 C -0.468 4.468 16 H 0.103 0.897 17 C -0.209 4.209 18 N -0.554 5.554 19 Si 0.821 3.179 20 H -0.194 1.194 21 H -0.195 1.195 22 H -0.194 1.194 23 N -0.137 5.137 24 H 0.277 0.723 25 H 0.070 0.930 26 H 0.112 0.888 27 H 0.076 0.924 28 H 0.138 0.862 29 H 0.115 0.885 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.220 0.780 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.235 0.765 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.713 -5.968 19.352 20.589 hybrid contribution 0.241 1.146 -2.039 2.351 sum -3.472 -4.822 17.313 18.304 Atomic orbital electron populations 1.21868 0.91958 1.02791 1.03563 1.19986 0.97116 0.95585 0.90683 1.21970 1.01613 0.93712 1.04087 1.24206 0.97908 0.89726 0.87915 1.70306 1.19699 1.12868 1.20582 1.23053 0.97674 0.97877 0.87967 1.19935 1.19091 0.92694 0.89284 1.19857 0.74410 0.80622 0.86257 1.90885 1.44155 1.39897 1.65567 1.86583 1.78801 1.34323 1.26230 1.22590 1.03768 0.95723 0.78296 1.20028 0.84706 0.89795 0.83173 1.90510 1.52071 1.50969 1.56973 1.41730 1.57367 1.11886 1.08278 1.19729 1.44045 0.87780 0.95288 0.89658 1.26135 0.95600 1.03842 0.95300 1.69671 1.43760 1.35234 1.06757 0.84855 0.78908 0.76576 0.77572 1.19430 1.19453 1.19448 1.43279 1.48155 1.13116 1.09187 0.72262 0.93013 0.88763 0.92392 0.86210 0.88509 0.92339 0.92684 0.78049 0.87213 0.87211 0.76511 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.18 71.98 0.66 -0.95 16 2 C -0.01 -0.18 3.39 -11.54 -0.04 -0.22 16 3 C -0.16 -1.70 8.93 71.98 0.64 -1.06 16 4 C 0.27 5.53 6.84 138.20 0.95 6.48 16 5 N -0.51 -12.59 11.20 -187.35 -2.10 -14.69 16 6 C 0.09 2.26 11.66 84.13 0.98 3.24 16 7 C -0.10 -2.66 7.13 39.97 0.29 -2.38 16 8 C 0.54 17.69 7.93 70.00 0.56 18.24 16 9 O -0.52 -17.98 16.70 19.46 0.33 -17.66 16 10 O -0.34 -12.57 9.77 -51.50 -0.50 -13.08 16 11 C 0.07 2.71 5.96 71.23 0.42 3.13 16 12 C 0.44 20.85 7.86 87.65 0.69 21.54 16 13 O -0.62 -34.14 16.08 15.73 0.25 -33.89 16 14 N -0.56 -28.00 5.29 -306.99 -1.62 -29.63 16 15 C -0.34 -18.76 9.68 84.04 0.81 -17.94 16 16 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 17 C -0.01 -0.40 5.50 84.93 0.47 0.06 16 18 N -0.91 -48.01 13.05 21.66 0.28 -47.72 16 19 Si 1.00 41.34 29.55 68.60 2.03 43.37 16 20 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 21 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 22 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 23 N -0.53 -12.39 5.94 -176.18 -1.05 -13.43 16 24 H 0.44 9.35 8.12 -92.70 -0.75 8.59 16 25 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 28 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.05 0.65 7.40 -2.39 -0.02 0.64 16 32 H 0.20 4.27 8.06 -2.91 -0.02 4.24 16 33 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 34 H 0.11 3.63 8.14 -2.38 -0.02 3.61 16 35 H 0.40 19.04 7.90 -92.71 -0.73 18.30 16 36 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -69.11 325.02 3.69 -65.42 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: -0.35 Total: 31.14 kcal Atomic # 6 Polarization: 23.73 SS G_CDS: 6.43 Total: 30.16 kcal Atomic # 7 Polarization: -100.98 SS G_CDS: -4.49 Total: -105.47 kcal Atomic # 8 Polarization: -64.70 SS G_CDS: 0.07 Total: -64.62 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -69.11 3.69 -65.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320177242.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.813 kcal (2) G-P(sol) polarization free energy of solvation -69.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds