Wall clock time and date at job start Tue Mar 31 2020 05:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35448 * 126.77714 * 2 1 4 4 C 1.41379 * 103.98624 * 180.09657 * 3 2 1 5 5 C 1.50700 * 126.80478 * 179.88633 * 4 3 2 6 6 N 1.46498 * 109.46769 * 94.71449 * 5 4 3 7 7 C 1.34777 * 119.99828 * 179.72341 * 6 5 4 8 8 O 1.21353 * 120.00267 * 0.28147 * 7 6 5 9 9 C 1.49445 * 120.00114 * 180.27895 * 7 6 5 10 10 O 1.21353 * 120.00086 * 359.97438 * 9 7 6 11 11 N 1.34777 * 120.00110 * 180.02562 * 9 7 6 12 12 C 1.46504 * 119.99854 * 180.02562 * 11 9 7 13 13 C 1.53004 * 109.46928 * 179.97438 * 12 11 9 14 14 C 1.50699 * 109.46843 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00516 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99783 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00142 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99983 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46811 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47141 * 119.99761 * 18 16 14 21 21 H 1.48498 * 109.47018 * 239.99808 * 18 16 14 22 22 N 1.30176 * 106.39512 * 359.63539 * 4 3 2 23 23 O 1.20923 * 111.60228 * 0.23088 * 22 4 3 24 24 H 1.08995 * 109.47419 * 180.29963 * 1 2 3 25 25 H 1.09002 * 109.47078 * 300.29387 * 1 2 3 26 26 H 1.08994 * 109.47300 * 60.29325 * 1 2 3 27 27 H 1.07999 * 128.00837 * 359.96959 * 3 2 1 28 28 H 1.09004 * 109.47210 * 334.71806 * 5 4 3 29 29 H 1.08994 * 109.47121 * 214.71776 * 5 4 3 30 30 H 0.97001 * 120.00384 * 0.02562 * 6 5 4 31 31 H 0.97000 * 120.00327 * 359.97438 * 11 9 7 32 32 H 1.09007 * 109.47284 * 299.99265 * 12 11 9 33 33 H 1.08997 * 109.47675 * 59.99838 * 12 11 9 34 34 H 1.09006 * 109.47053 * 299.99457 * 13 12 11 35 35 H 1.08997 * 109.47419 * 59.99843 * 13 12 11 36 36 H 0.96996 * 120.00393 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6213 0.5372 -0.0023 5 6 4.9211 1.2999 -0.0057 6 7 5.4025 1.4503 1.3697 7 6 6.5590 2.0988 1.6118 8 8 7.1988 2.5626 0.6909 9 6 7.0533 2.2467 3.0143 10 8 6.4133 1.7833 3.9353 11 7 8.2095 2.8957 3.2564 12 6 8.6944 3.0402 4.6313 13 6 10.0167 3.8098 4.6275 14 6 10.5152 3.9590 6.0418 15 1 9.9460 3.5458 6.8614 16 6 11.6985 4.6221 6.2894 17 7 12.3924 5.1239 5.2912 18 14 12.3167 4.8064 8.0425 19 1 11.3603 4.1581 8.9753 20 1 13.6475 4.1597 8.1686 21 1 12.4334 6.2485 8.3771 22 7 3.4763 -0.7564 0.0045 23 8 2.3095 -1.0736 0.0060 24 1 -0.3634 -1.0276 0.0054 25 1 -0.3633 0.5184 0.8874 26 1 -0.3633 0.5092 -0.8925 27 1 2.0345 2.1270 -0.0005 28 1 4.7632 2.2849 -0.4451 29 1 5.6607 0.7548 -0.5921 30 1 4.8913 1.0793 2.1059 31 1 8.7210 3.2664 2.5203 32 1 7.9577 3.5860 5.2209 33 1 8.8500 2.0534 5.0674 34 1 10.7533 3.2637 4.0380 35 1 9.8616 4.7966 4.1913 36 1 13.2250 5.5900 5.4653 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321788683.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:55 Heat of formation + Delta-G solvation = -19.852517 kcal Electronic energy + Delta-G solvation = -20442.407160 eV Core-core repulsion = 16929.931554 eV Total energy + Delta-G solvation = -3512.475606 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.40173 -40.45266 -38.38047 -36.17192 -35.08477 -34.12846 -33.31661 -32.82164 -29.84711 -28.39864 -28.09234 -25.44323 -23.69067 -23.16418 -21.05705 -20.80435 -20.20253 -18.40942 -18.09398 -17.55936 -16.85144 -16.29287 -15.95529 -15.51646 -15.05967 -14.76889 -14.59083 -14.40764 -14.14789 -13.77710 -13.49750 -13.36234 -13.24145 -12.83480 -12.68992 -12.33541 -11.62064 -11.58409 -11.24209 -11.08192 -10.79697 -10.65502 -10.41645 -9.82268 -9.77230 -9.49354 -9.45928 -9.20761 -8.71483 -8.42805 -6.10797 -4.14385 0.99763 1.55590 1.57163 2.60259 2.67919 3.27676 3.35322 3.38035 3.39924 3.60872 3.87513 3.96089 4.39742 4.55531 4.68957 4.70218 4.79437 4.87932 5.06536 5.14610 5.26146 5.28383 5.40087 5.57589 5.93491 6.16880 6.22921 6.57697 6.67890 6.95300 7.44590 7.57099 7.60874 7.80465 7.86541 7.87071 8.19498 8.32034 8.91455 9.50559 11.00706 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.048708 B = 0.002372 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.711806 B =11800.265538 C =12112.003410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.032 4.032 3 C -0.220 4.220 4 C -0.003 4.003 5 C 0.201 3.799 6 N -0.703 5.703 7 C 0.512 3.488 8 O -0.517 6.517 9 C 0.499 3.501 10 O -0.532 6.532 11 N -0.685 5.685 12 C 0.118 3.882 13 C 0.010 3.990 14 C -0.523 4.523 15 H 0.061 0.939 16 C 0.058 3.942 17 N -0.892 5.892 18 Si 0.898 3.102 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.283 1.283 22 N -0.345 5.345 23 O 0.109 5.891 24 H 0.084 0.916 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.175 0.825 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.415 0.585 31 H 0.411 0.589 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.025 0.975 35 H 0.025 0.975 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.672 -8.167 -13.026 28.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.095 4.095 3 C -0.242 4.242 4 C -0.162 4.162 5 C 0.077 3.923 6 N -0.358 5.358 7 C 0.293 3.707 8 O -0.392 6.392 9 C 0.278 3.722 10 O -0.410 6.410 11 N -0.336 5.336 12 C -0.003 4.003 13 C -0.027 4.027 14 C -0.561 4.561 15 H 0.079 0.921 16 C -0.144 4.144 17 N -0.530 5.530 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.209 1.209 22 N -0.046 5.046 23 O 0.038 5.962 24 H 0.103 0.897 25 H 0.111 0.889 26 H 0.110 0.890 27 H 0.193 0.807 28 H 0.116 0.884 29 H 0.109 0.891 30 H 0.251 0.749 31 H 0.247 0.753 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -22.592 -9.073 -13.061 27.628 hybrid contribution 0.104 0.941 0.836 1.263 sum -22.488 -8.132 -12.225 26.857 Atomic orbital electron populations 1.20375 0.83710 1.04890 1.04326 1.24573 0.96564 0.85948 1.02403 1.22456 0.90925 1.01376 1.09448 1.23453 0.97090 0.90238 1.05376 1.19518 0.89243 0.99501 0.84038 1.45682 1.23803 1.57145 1.09198 1.20474 0.81186 0.78725 0.90346 1.90771 1.55955 1.46782 1.45660 1.19870 0.83078 0.80844 0.88405 1.90740 1.56770 1.48320 1.45186 1.46230 1.21530 1.53401 1.12390 1.21953 0.98437 1.01241 0.78680 1.19368 0.89522 0.95383 0.98442 1.21050 1.06713 1.36266 0.92100 0.92102 1.25013 0.96605 0.95296 0.97437 1.69966 1.15237 1.37010 1.30834 0.86436 0.78753 0.77829 0.84420 1.19583 1.20920 1.20923 1.73930 0.97044 1.16176 1.17486 1.84863 1.11209 1.33324 1.66767 0.89733 0.88915 0.88992 0.80705 0.88397 0.89063 0.74914 0.75330 0.91803 0.91823 0.95623 0.95625 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.19 10.45 36.01 0.38 0.19 16 2 C -0.03 -0.21 7.49 -35.30 -0.26 -0.47 16 3 C -0.22 -1.58 11.06 -39.38 -0.44 -2.02 16 4 C 0.00 -0.03 6.70 -82.10 -0.55 -0.58 16 5 C 0.20 2.02 6.26 -5.19 -0.03 1.99 16 6 N -0.70 -8.53 5.54 -61.91 -0.34 -8.87 16 7 C 0.51 7.69 7.89 -11.59 -0.09 7.60 16 8 O -0.52 -8.60 16.48 5.49 0.09 -8.51 16 9 C 0.50 8.66 7.89 -11.59 -0.09 8.57 16 10 O -0.53 -10.23 16.48 5.49 0.09 -10.14 16 11 N -0.68 -12.50 5.55 -60.72 -0.34 -12.84 16 12 C 0.12 2.48 5.61 -4.04 -0.02 2.46 16 13 C 0.01 0.25 5.09 -27.88 -0.14 0.11 16 14 C -0.52 -14.38 9.11 -34.44 -0.31 -14.70 16 15 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 18 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 N -0.35 -3.86 12.07 33.42 0.40 -3.46 16 23 O 0.11 1.02 11.20 17.19 0.19 1.22 16 24 H 0.08 0.15 8.14 -51.93 -0.42 -0.28 16 25 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 26 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 27 H 0.18 0.84 8.06 -52.49 -0.42 0.42 16 28 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.41 4.89 7.94 -40.82 -0.32 4.57 16 31 H 0.41 7.12 7.94 -40.82 -0.32 6.79 16 32 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 34 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 327.72 15.07 4.94 4.94 Total: -1.00 -32.83 327.72 -5.33 -38.16 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -4.42 Total: 3.91 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: -1.66 Total: 4.69 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: 0.46 Total: -50.55 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: 0.37 Total: -17.43 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.83 -5.33 -38.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321788683.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.310 kcal (2) G-P(sol) polarization free energy of solvation -32.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds