Wall clock time and date at job start Tue Mar 31 2020 05:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35448 * 126.77714 * 2 1 4 4 C 1.41379 * 103.98624 * 180.09657 * 3 2 1 5 5 C 1.50700 * 126.80478 * 179.88633 * 4 3 2 6 6 N 1.46498 * 109.46769 * 94.71449 * 5 4 3 7 7 C 1.34777 * 119.99828 * 179.72341 * 6 5 4 8 8 O 1.21353 * 120.00267 * 0.28147 * 7 6 5 9 9 C 1.49445 * 120.00114 * 180.27895 * 7 6 5 10 10 O 1.21353 * 120.00086 * 359.97438 * 9 7 6 11 11 N 1.34777 * 120.00110 * 180.02562 * 9 7 6 12 12 C 1.46504 * 119.99854 * 180.02562 * 11 9 7 13 13 C 1.53004 * 109.46928 * 179.97438 * 12 11 9 14 14 C 1.50699 * 109.46843 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00516 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99783 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00142 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99983 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46811 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47141 * 119.99761 * 18 16 14 21 21 H 1.48498 * 109.47018 * 239.99808 * 18 16 14 22 22 N 1.30176 * 106.39512 * 359.63539 * 4 3 2 23 23 O 1.20923 * 111.60228 * 0.23088 * 22 4 3 24 24 H 1.08995 * 109.47419 * 180.29963 * 1 2 3 25 25 H 1.09002 * 109.47078 * 300.29387 * 1 2 3 26 26 H 1.08994 * 109.47300 * 60.29325 * 1 2 3 27 27 H 1.07999 * 128.00837 * 359.96959 * 3 2 1 28 28 H 1.09004 * 109.47210 * 334.71806 * 5 4 3 29 29 H 1.08994 * 109.47121 * 214.71776 * 5 4 3 30 30 H 0.97001 * 120.00384 * 0.02562 * 6 5 4 31 31 H 0.97000 * 120.00327 * 359.97438 * 11 9 7 32 32 H 1.09007 * 109.47284 * 299.99265 * 12 11 9 33 33 H 1.08997 * 109.47675 * 59.99838 * 12 11 9 34 34 H 1.09006 * 109.47053 * 299.99457 * 13 12 11 35 35 H 1.08997 * 109.47419 * 59.99843 * 13 12 11 36 36 H 0.96996 * 120.00393 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6213 0.5372 -0.0023 5 6 4.9211 1.2999 -0.0057 6 7 5.4025 1.4503 1.3697 7 6 6.5590 2.0988 1.6118 8 8 7.1988 2.5626 0.6909 9 6 7.0533 2.2467 3.0143 10 8 6.4133 1.7833 3.9353 11 7 8.2095 2.8957 3.2564 12 6 8.6944 3.0402 4.6313 13 6 10.0167 3.8098 4.6275 14 6 10.5152 3.9590 6.0418 15 1 9.9460 3.5458 6.8614 16 6 11.6985 4.6221 6.2894 17 7 12.3924 5.1239 5.2912 18 14 12.3167 4.8064 8.0425 19 1 11.3603 4.1581 8.9753 20 1 13.6475 4.1597 8.1686 21 1 12.4334 6.2485 8.3771 22 7 3.4763 -0.7564 0.0045 23 8 2.3095 -1.0736 0.0060 24 1 -0.3634 -1.0276 0.0054 25 1 -0.3633 0.5184 0.8874 26 1 -0.3633 0.5092 -0.8925 27 1 2.0345 2.1270 -0.0005 28 1 4.7632 2.2849 -0.4451 29 1 5.6607 0.7548 -0.5921 30 1 4.8913 1.0793 2.1059 31 1 8.7210 3.2664 2.5203 32 1 7.9577 3.5860 5.2209 33 1 8.8500 2.0534 5.0674 34 1 10.7533 3.2637 4.0380 35 1 9.8616 4.7966 4.1913 36 1 13.2250 5.5900 5.4653 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321788683.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:55 Heat of formation + Delta-G solvation = -44.613169 kcal Electronic energy + Delta-G solvation = -20443.480863 eV Core-core repulsion = 16929.931554 eV Total energy + Delta-G solvation = -3513.549309 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -46.06298 -41.76524 -39.74233 -37.24312 -36.60979 -34.95727 -34.65801 -34.00561 -31.71833 -29.26900 -28.60616 -27.18921 -24.95962 -24.08228 -22.84317 -21.67926 -21.35704 -19.64706 -18.80665 -18.58870 -18.22846 -17.87241 -17.23673 -16.68742 -16.51821 -16.24859 -16.03254 -15.38639 -14.99302 -14.88733 -14.52284 -14.32265 -14.02024 -13.94002 -13.76310 -13.26538 -13.20104 -12.97111 -12.93764 -12.52078 -12.30743 -12.20236 -11.70690 -11.54296 -11.40692 -10.74816 -10.63102 -10.53427 -10.30592 -10.23345 -8.24185 -6.35240 0.24163 0.37329 0.86545 1.42050 1.42258 1.49160 1.56610 2.04567 2.16466 2.39493 2.66089 2.91869 3.10791 3.36512 3.38883 4.04550 4.15535 4.22362 4.37265 4.43893 4.46626 4.55504 4.77578 4.80035 4.88066 4.90198 4.95549 5.04612 5.26968 5.41379 5.54152 5.73093 5.81538 6.12082 6.25759 6.59312 6.78079 6.86320 7.18577 7.34272 8.88006 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.048708 B = 0.002372 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.711806 B =11800.265538 C =12112.003410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.024 4.024 3 C -0.225 4.225 4 C -0.014 4.014 5 C 0.201 3.799 6 N -0.687 5.687 7 C 0.521 3.479 8 O -0.534 6.534 9 C 0.502 3.498 10 O -0.550 6.550 11 N -0.686 5.686 12 C 0.137 3.863 13 C 0.018 3.982 14 C -0.544 4.544 15 H 0.065 0.935 16 C 0.004 3.996 17 N -0.928 5.928 18 Si 0.968 3.032 19 H -0.262 1.262 20 H -0.279 1.279 21 H -0.278 1.278 22 N -0.382 5.382 23 O 0.097 5.903 24 H 0.092 0.908 25 H 0.108 0.892 26 H 0.111 0.889 27 H 0.200 0.800 28 H 0.117 0.883 29 H 0.085 0.915 30 H 0.417 0.583 31 H 0.416 0.584 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.008 0.992 35 H 0.009 0.991 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.505 -8.145 -12.782 29.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.087 4.087 3 C -0.247 4.247 4 C -0.172 4.172 5 C 0.079 3.921 6 N -0.341 5.341 7 C 0.301 3.699 8 O -0.410 6.410 9 C 0.282 3.718 10 O -0.428 6.428 11 N -0.337 5.337 12 C 0.015 3.985 13 C -0.020 4.020 14 C -0.582 4.582 15 H 0.083 0.917 16 C -0.195 4.195 17 N -0.567 5.567 18 Si 0.793 3.207 19 H -0.186 1.186 20 H -0.204 1.204 21 H -0.203 1.203 22 N -0.085 5.085 23 O 0.028 5.972 24 H 0.111 0.889 25 H 0.126 0.874 26 H 0.129 0.871 27 H 0.217 0.783 28 H 0.135 0.865 29 H 0.104 0.896 30 H 0.254 0.746 31 H 0.252 0.748 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.026 0.974 35 H 0.028 0.972 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -24.471 -9.075 -12.836 29.085 hybrid contribution 0.560 0.896 0.702 1.269 sum -23.910 -8.180 -12.134 28.033 Atomic orbital electron populations 1.20616 0.80683 1.06004 1.05901 1.25343 0.98071 0.84953 1.00364 1.22774 0.89727 1.02730 1.09459 1.23525 0.97727 0.90149 1.05770 1.19646 0.89479 1.00572 0.82445 1.45647 1.22512 1.55489 1.10441 1.19895 0.81905 0.79317 0.88765 1.90775 1.56708 1.48010 1.45548 1.20221 0.82295 0.79804 0.89451 1.90729 1.57134 1.48837 1.46134 1.46057 1.22199 1.54017 1.11437 1.21503 0.96515 1.00325 0.80192 1.19189 0.90974 0.94753 0.97050 1.21477 1.07126 1.36246 0.93353 0.91718 1.25931 0.96852 0.94900 1.01830 1.70079 1.15760 1.37785 1.33112 0.85343 0.78212 0.77968 0.79188 1.18630 1.20436 1.20325 1.73924 0.98178 1.17146 1.19224 1.84819 1.11051 1.34441 1.66879 0.88917 0.87407 0.87050 0.78304 0.86522 0.89635 0.74577 0.74777 0.91829 0.92096 0.97397 0.97227 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.16 10.45 71.24 0.74 0.59 16 2 C -0.02 -0.27 7.49 25.04 0.19 -0.08 16 3 C -0.23 -2.78 11.06 22.40 0.25 -2.53 16 4 C -0.01 -0.26 6.70 43.58 0.29 0.03 16 5 C 0.20 3.83 6.26 85.63 0.54 4.37 16 6 N -0.69 -15.96 5.54 -468.15 -2.59 -18.55 16 7 C 0.52 15.26 7.89 87.27 0.69 15.95 16 8 O -0.53 -17.38 16.48 -3.26 -0.05 -17.43 16 9 C 0.50 17.18 7.89 87.27 0.69 17.87 16 10 O -0.55 -20.75 16.48 -3.26 -0.05 -20.81 16 11 N -0.69 -25.04 5.55 -464.39 -2.58 -27.61 16 12 C 0.14 5.77 5.61 86.38 0.48 6.25 16 13 C 0.02 0.90 5.09 29.85 0.15 1.05 16 14 C -0.54 -30.05 9.11 25.60 0.23 -29.81 16 15 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 16 C 0.00 0.20 5.46 84.66 0.46 0.66 16 17 N -0.93 -54.84 13.29 21.45 0.28 -54.55 16 18 Si 0.97 43.48 29.54 68.60 2.03 45.50 16 19 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 20 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 21 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 22 N -0.38 -8.40 12.07 -49.56 -0.60 -9.00 16 23 O 0.10 1.76 11.20 71.67 0.80 2.56 16 24 H 0.09 0.08 8.14 -2.39 -0.02 0.06 16 25 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 26 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 27 H 0.20 1.32 8.06 -2.91 -0.02 1.30 16 28 H 0.12 1.81 8.14 -2.38 -0.02 1.79 16 29 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.42 9.44 7.94 -92.71 -0.74 8.71 16 31 H 0.42 14.50 7.94 -92.71 -0.74 13.76 16 32 H 0.06 2.68 8.14 -2.38 -0.02 2.66 16 33 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 35 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -70.09 327.72 1.61 -68.48 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -0.34 Total: 17.08 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: 4.72 Total: 14.34 kcal Atomic # 7 Polarization: -104.24 SS G_CDS: -5.48 Total: -109.72 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: 0.70 Total: -35.68 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -70.09 1.61 -68.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321788683.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.864 kcal (2) G-P(sol) polarization free energy of solvation -70.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds