Wall clock time and date at job start Tue Mar 31 2020 05:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.41378 * 126.80317 * 2 1 4 4 C 1.35448 * 103.98815 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.78029 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.46700 * 89.99935 * 5 4 3 7 7 C 1.34784 * 119.99893 * 180.02562 * 6 5 4 8 8 O 1.21341 * 119.99658 * 0.02562 * 7 6 5 9 9 C 1.49448 * 119.99762 * 179.72897 * 7 6 5 10 10 O 1.21348 * 120.00622 * 359.97438 * 9 7 6 11 11 N 1.34774 * 119.99767 * 179.97438 * 9 7 6 12 12 C 1.46498 * 120.00210 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.47427 * 179.97438 * 12 11 9 14 14 C 1.50693 * 109.47512 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99607 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00209 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00107 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99860 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47200 * 59.99997 * 18 16 14 20 20 H 1.48497 * 109.47052 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47156 * 300.00011 * 18 16 14 22 22 O 1.34047 * 106.44539 * 0.24331 * 4 3 2 23 23 N 1.20923 * 111.56313 * 359.55803 * 22 4 3 24 24 H 1.09006 * 109.47153 * 90.00301 * 1 2 3 25 25 H 1.09001 * 109.46955 * 209.99988 * 1 2 3 26 26 H 1.08991 * 109.47161 * 330.00274 * 1 2 3 27 27 H 1.07997 * 128.00541 * 0.03522 * 3 2 1 28 28 H 1.08998 * 109.46743 * 330.00411 * 5 4 3 29 29 H 1.08994 * 109.47542 * 210.00270 * 5 4 3 30 30 H 0.97005 * 120.00261 * 0.02562 * 6 5 4 31 31 H 0.97004 * 120.00037 * 0.02562 * 11 9 7 32 32 H 1.08998 * 109.47521 * 300.00219 * 12 11 9 33 33 H 1.09001 * 109.46777 * 60.00164 * 12 11 9 34 34 H 1.08998 * 109.47065 * 300.00641 * 13 12 11 35 35 H 1.09006 * 109.46890 * 59.99899 * 13 12 11 36 36 H 0.97001 * 119.99847 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6025 0.6068 -0.0006 5 6 4.9022 1.3695 -0.0014 6 7 5.3240 1.6168 1.3796 7 6 6.4668 2.2880 1.6253 8 8 7.1459 2.6877 0.7025 9 6 6.8939 2.5455 3.0340 10 8 6.2118 2.1508 3.9568 11 7 8.0369 3.2161 3.2797 12 6 8.4554 3.4692 4.6606 13 6 9.7761 4.2417 4.6599 14 6 10.2070 4.5014 6.0804 15 1 9.5998 4.1502 6.9016 16 6 11.3763 5.1874 6.3317 17 7 12.1154 5.6155 5.3317 18 14 11.9106 5.5087 8.0926 19 1 12.0951 4.2149 8.7978 20 1 13.1924 6.2586 8.0919 21 1 10.8696 6.3074 8.7879 22 8 3.4538 -0.7254 -0.0064 23 7 2.2868 -1.0423 -0.0005 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5137 27 1 2.0710 2.1742 0.0005 28 1 4.7648 2.3209 -0.5152 29 1 5.6657 0.7858 -0.5155 30 1 4.7809 1.2976 2.1172 31 1 8.5820 3.5320 2.5421 32 1 7.6912 4.0559 5.1703 33 1 8.5905 2.5199 5.1790 34 1 10.5401 3.6546 4.1504 35 1 9.6414 5.1910 4.1413 36 1 12.9382 6.0978 5.5085 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322507672.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:18 Heat of formation + Delta-G solvation = -19.202998 kcal Electronic energy + Delta-G solvation = -20461.182603 eV Core-core repulsion = 16948.735162 eV Total energy + Delta-G solvation = -3512.447441 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.37349 -40.51607 -38.42703 -35.98373 -35.21912 -34.94004 -32.90861 -32.29566 -29.86125 -29.12447 -27.75007 -25.39535 -23.61192 -23.23212 -21.08564 -20.82513 -20.26584 -18.65312 -18.06805 -17.41015 -16.87885 -16.30705 -16.05063 -15.54174 -15.08290 -14.87795 -14.59449 -14.39846 -13.95082 -13.80957 -13.51331 -13.49335 -13.33136 -12.84483 -12.67226 -12.33308 -11.64678 -11.58541 -11.26839 -11.06233 -10.70098 -10.45921 -10.41420 -10.11206 -9.80785 -9.60247 -9.48052 -9.24370 -8.73947 -8.43332 -6.11472 -4.15323 0.84432 1.49956 1.74159 2.38037 2.69872 3.29769 3.33161 3.34110 3.36739 3.74113 3.80489 3.88749 4.38603 4.50505 4.60899 4.69552 4.81589 5.02381 5.05572 5.09253 5.25337 5.31400 5.33607 5.65195 5.82495 6.14554 6.20936 6.54707 6.65683 6.86670 7.41149 7.55570 7.55847 7.81423 7.81957 7.85381 8.17105 8.29422 8.89983 9.49623 10.99891 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.048172 B = 0.002382 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.106347 B =11750.874154 C =12073.042451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.012 3.988 3 C -0.203 4.203 4 C -0.051 4.051 5 C 0.203 3.797 6 N -0.706 5.706 7 C 0.513 3.487 8 O -0.515 6.515 9 C 0.499 3.501 10 O -0.531 6.531 11 N -0.684 5.684 12 C 0.118 3.882 13 C 0.011 3.989 14 C -0.524 4.524 15 H 0.060 0.940 16 C 0.059 3.941 17 N -0.892 5.892 18 Si 0.899 3.101 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 O 0.110 5.890 23 N -0.358 5.358 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.177 0.823 28 H 0.109 0.891 29 H 0.099 0.901 30 H 0.417 0.583 31 H 0.411 0.589 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.025 0.975 35 H 0.025 0.975 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.128 -8.322 -13.126 25.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.146 4.146 3 C -0.225 4.225 4 C -0.115 4.115 5 C 0.079 3.921 6 N -0.363 5.363 7 C 0.295 3.705 8 O -0.389 6.389 9 C 0.278 3.722 10 O -0.409 6.409 11 N -0.335 5.335 12 C -0.003 4.003 13 C -0.026 4.026 14 C -0.563 4.563 15 H 0.078 0.922 16 C -0.143 4.143 17 N -0.530 5.530 18 Si 0.726 3.274 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.201 1.201 22 O 0.041 5.959 23 N -0.060 5.060 24 H 0.100 0.900 25 H 0.096 0.904 26 H 0.102 0.898 27 H 0.194 0.806 28 H 0.127 0.873 29 H 0.117 0.883 30 H 0.253 0.747 31 H 0.247 0.753 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.155 -9.526 -13.164 25.890 hybrid contribution 0.254 1.046 0.867 1.383 sum -19.901 -8.480 -12.297 24.883 Atomic orbital electron populations 1.20194 0.85629 1.04069 1.03524 1.23684 0.99307 0.88652 1.02972 1.22582 0.90956 1.01537 1.07468 1.24301 0.97856 0.84163 1.05183 1.19661 0.89253 0.98859 0.84352 1.45740 1.24556 1.57410 1.08565 1.20488 0.81062 0.78491 0.90498 1.90779 1.53015 1.49345 1.45759 1.19842 0.83154 0.80823 0.88408 1.90748 1.53737 1.51179 1.45258 1.46235 1.21963 1.53312 1.11991 1.21959 0.99286 1.00643 0.78435 1.19355 0.89585 0.95289 0.98407 1.20967 1.07166 1.36556 0.91621 0.92213 1.25003 0.96389 0.95430 0.97455 1.69946 1.14404 1.37814 1.30872 0.86549 0.77862 0.78471 0.84507 1.20099 1.21233 1.20102 1.84874 1.21616 1.22447 1.66937 1.73895 0.89274 1.24128 1.18735 0.90022 0.90393 0.89781 0.80589 0.87316 0.88291 0.74673 0.75314 0.91794 0.91781 0.95627 0.95638 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.47 36.01 0.38 -0.02 16 2 C 0.01 0.10 7.33 -82.10 -0.60 -0.50 16 3 C -0.20 -1.47 11.06 -39.38 -0.44 -1.90 16 4 C -0.05 -0.41 6.86 -35.30 -0.24 -0.66 16 5 C 0.20 1.57 6.24 -5.19 -0.03 1.54 16 6 N -0.71 -7.24 5.54 -61.91 -0.34 -7.59 16 7 C 0.51 6.95 7.89 -11.58 -0.09 6.86 16 8 O -0.51 -7.80 16.48 5.50 0.09 -7.71 16 9 C 0.50 8.12 7.89 -11.59 -0.09 8.03 16 10 O -0.53 -9.68 16.48 5.50 0.09 -9.59 16 11 N -0.68 -11.91 5.55 -60.73 -0.34 -12.25 16 12 C 0.12 2.40 5.61 -4.04 -0.02 2.38 16 13 C 0.01 0.27 5.09 -27.89 -0.14 0.13 16 14 C -0.52 -14.23 9.11 -34.44 -0.31 -14.54 16 15 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 18 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 O 0.11 1.12 11.20 17.16 0.19 1.31 16 23 N -0.36 -3.85 12.07 33.42 0.40 -3.44 16 24 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.18 0.83 8.06 -52.49 -0.42 0.41 16 28 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.42 4.13 7.94 -40.82 -0.32 3.80 16 31 H 0.41 6.76 7.95 -40.82 -0.32 6.44 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 327.72 15.07 4.94 4.94 Total: -1.00 -32.02 327.72 -5.36 -37.38 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -4.42 Total: 3.12 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -1.69 Total: 2.86 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: 0.46 Total: -48.38 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: 0.37 Total: -15.99 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.02 -5.36 -37.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322507672.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.178 kcal (2) G-P(sol) polarization free energy of solvation -32.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds