Wall clock time and date at job start Tue Mar 31 2020 06:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46658 * 2 1 4 4 C 1.52996 * 109.47378 * 119.99983 * 2 1 3 5 5 H 1.08999 * 109.46977 * 185.00711 * 4 2 1 6 6 F 1.39910 * 109.46964 * 305.00342 * 4 2 1 7 7 C 1.50697 * 109.47179 * 65.00014 * 4 2 1 8 8 O 1.21290 * 120.00281 * 315.00193 * 7 4 2 9 9 N 1.34775 * 119.99919 * 134.99874 * 7 4 2 10 10 C 1.39993 * 120.00352 * 174.79622 * 9 7 4 11 11 C 1.38921 * 119.99807 * 326.13685 * 10 9 7 12 12 C 1.38004 * 119.99569 * 179.76171 * 11 10 9 13 13 C 1.38908 * 120.00129 * 0.48559 * 12 11 10 14 14 O 1.35784 * 119.99662 * 179.74273 * 13 12 11 15 15 C 1.34813 * 116.99859 * 185.93840 * 14 13 12 16 16 H 1.08003 * 119.99688 * 5.40961 * 15 14 13 17 17 C 1.38623 * 120.00091 * 185.40340 * 15 14 13 18 18 N 1.31576 * 120.00355 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00009 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47354 * 89.99567 * 19 17 15 21 21 H 1.48503 * 109.47346 * 209.99758 * 19 17 15 22 22 H 1.48498 * 109.47036 * 329.99510 * 19 17 15 23 23 C 1.38905 * 120.00152 * 359.76870 * 13 12 11 24 24 C 1.37995 * 120.00431 * 359.97438 * 23 13 12 25 25 H 1.08998 * 109.47345 * 60.00696 * 1 2 3 26 26 H 1.08999 * 109.46630 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47431 * 299.99739 * 1 2 3 28 28 H 1.09003 * 109.47318 * 240.00305 * 2 1 3 29 29 H 1.08999 * 109.46765 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47020 * 300.00386 * 3 2 1 31 31 H 1.09003 * 109.47007 * 60.00115 * 3 2 1 32 32 H 0.96999 * 119.99904 * 354.79781 * 9 7 4 33 33 H 1.07998 * 120.00298 * 359.97438 * 11 10 9 34 34 H 1.08002 * 119.99620 * 180.21354 * 12 11 10 35 35 H 0.97000 * 120.00011 * 180.02562 * 18 17 15 36 36 H 1.08002 * 119.99543 * 179.97438 * 23 13 12 37 37 H 1.08002 * 120.00316 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 3.1264 -0.6442 1.2951 6 9 1.4822 -0.1314 2.3886 7 6 1.6415 -2.1733 1.1889 8 8 0.5143 -2.4797 0.8621 9 7 2.5375 -3.1314 1.4979 10 6 2.1390 -4.4725 1.5480 11 6 0.8598 -4.8014 1.9786 12 6 0.4654 -6.1232 2.0233 13 6 1.3509 -7.1253 1.6474 14 8 0.9644 -8.4261 1.6963 15 6 1.9068 -9.3546 1.4373 16 1 2.9340 -9.0551 1.2903 17 6 1.5575 -10.6938 1.3596 18 7 2.4773 -11.6002 1.1073 19 14 -0.2192 -11.2118 1.6133 20 1 -0.9273 -11.2076 0.3080 21 1 -0.2585 -12.5784 2.1933 22 1 -0.8844 -10.2614 2.5404 23 6 2.6317 -6.7967 1.2218 24 6 3.0244 -5.4748 1.1721 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.4584 -2.8918 1.6857 33 1 0.1729 -4.0226 2.2751 34 1 -0.5302 -6.3786 2.3548 35 1 2.2327 -12.5373 1.0526 36 1 3.3201 -7.5760 0.9300 37 1 4.0204 -5.2194 0.8416 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324342368.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:06 Heat of formation + Delta-G solvation = -87.456318 kcal Electronic energy + Delta-G solvation = -21394.445441 eV Core-core repulsion = 17859.118352 eV Total energy + Delta-G solvation = -3535.327089 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.12430 -40.29259 -38.91351 -36.88995 -35.43543 -34.21681 -32.37748 -30.38138 -29.26550 -27.38332 -27.16544 -25.19994 -22.52372 -22.07512 -20.68532 -20.22817 -18.21263 -17.81807 -17.50615 -17.06174 -16.18847 -16.10863 -15.13302 -14.79464 -14.55995 -14.05529 -13.97712 -13.76336 -13.66212 -13.40858 -13.15693 -12.84867 -12.41867 -12.36887 -12.30874 -12.16456 -11.90966 -11.74370 -11.39314 -11.20197 -10.97870 -10.96513 -10.77928 -10.20534 -9.85050 -9.56729 -9.32265 -8.82159 -8.36183 -7.13730 -6.45798 -4.11631 1.80972 2.04011 2.57154 2.90570 3.20857 3.25085 3.39665 4.08889 4.21380 4.25705 4.35693 4.43590 4.52555 4.84479 4.93344 5.05016 5.06483 5.24494 5.41914 5.43839 5.60440 5.62268 5.73060 5.79280 5.92808 6.02312 6.03684 6.09683 6.38732 6.59129 6.68230 6.81602 6.99906 7.16550 7.45675 7.50980 7.72658 7.96752 8.09987 8.89423 9.51220 10.61638 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.043477 B = 0.003227 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.863114 B = 8673.774409 C = 8948.348837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.110 4.110 3 C -0.149 4.149 4 C 0.088 3.912 5 H 0.098 0.902 6 F -0.188 7.188 7 C 0.484 3.516 8 O -0.500 6.500 9 N -0.652 5.652 10 C 0.039 3.961 11 C -0.068 4.068 12 C -0.176 4.176 13 C 0.154 3.846 14 O -0.214 6.214 15 C -0.390 4.390 16 H 0.106 0.894 17 C 0.064 3.936 18 N -0.878 5.878 19 Si 0.905 3.095 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.259 1.259 23 C -0.206 4.206 24 C -0.089 4.089 25 H 0.053 0.947 26 H 0.095 0.905 27 H 0.056 0.944 28 H 0.089 0.911 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.404 0.596 33 H 0.126 0.874 34 H 0.122 0.878 35 H 0.280 0.720 36 H 0.139 0.861 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.863 21.619 -0.783 21.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.129 4.129 3 C -0.206 4.206 4 C 0.049 3.951 5 H 0.116 0.884 6 F -0.168 7.168 7 C 0.269 3.731 8 O -0.375 6.375 9 N -0.297 5.297 10 C -0.053 4.053 11 C -0.088 4.088 12 C -0.196 4.196 13 C 0.101 3.899 14 O -0.119 6.119 15 C -0.465 4.465 16 H 0.124 0.876 17 C -0.140 4.140 18 N -0.516 5.516 19 Si 0.731 3.269 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.183 1.183 23 C -0.226 4.226 24 C -0.109 4.109 25 H 0.072 0.928 26 H 0.114 0.886 27 H 0.075 0.925 28 H 0.107 0.893 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.239 0.761 33 H 0.144 0.856 34 H 0.140 0.860 35 H 0.090 0.910 36 H 0.156 0.844 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.860 21.085 -0.952 21.124 hybrid contribution 0.080 -0.229 0.163 0.292 sum 0.940 20.855 -0.789 20.891 Atomic orbital electron populations 1.22128 0.93092 1.05550 1.01551 1.21557 0.98810 0.96711 0.95805 1.21861 1.00875 0.95030 1.02832 1.21591 0.99041 0.89610 0.84882 0.88428 1.92872 1.87580 1.84478 1.51915 1.20982 0.86263 0.87703 0.78197 1.90649 1.19864 1.82430 1.44527 1.43329 1.12936 1.05442 1.67973 1.17286 0.96302 0.81805 1.09937 1.20590 0.94887 0.95473 0.97819 1.20118 1.00086 0.90676 1.08745 1.19167 0.92475 0.84728 0.93504 1.83603 1.38788 1.11412 1.78092 1.20754 0.90054 0.85809 1.49893 0.87623 1.24471 0.99714 0.94282 0.95515 1.69652 1.33656 1.01953 1.46331 0.86176 0.83281 0.77961 0.79500 1.19845 1.20742 1.18255 1.21105 0.97671 0.96063 1.07728 1.20527 0.98555 0.91977 0.99811 0.92780 0.88642 0.92476 0.89276 0.92437 0.91731 0.91922 0.76068 0.85644 0.86004 0.90988 0.84379 0.86763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 8.71 37.16 0.32 -1.44 16 2 C -0.11 -0.98 2.75 -90.62 -0.25 -1.22 16 3 C -0.15 -1.02 9.11 37.16 0.34 -0.68 16 4 C 0.09 0.85 3.46 -27.89 -0.10 0.75 16 5 H 0.10 0.59 7.98 -51.93 -0.41 0.18 16 6 F -0.19 -2.17 16.03 2.25 0.04 -2.13 16 7 C 0.48 6.32 6.90 -10.99 -0.08 6.24 16 8 O -0.50 -8.28 11.51 5.55 0.06 -8.21 16 9 N -0.65 -8.20 5.34 -9.82 -0.05 -8.25 16 10 C 0.04 0.65 6.27 -83.62 -0.52 0.12 16 11 C -0.07 -1.25 8.65 -39.41 -0.34 -1.59 16 12 C -0.18 -3.59 9.98 -39.42 -0.39 -3.98 16 13 C 0.15 3.51 6.65 -39.09 -0.26 3.25 16 14 O -0.21 -5.59 8.58 -0.01 0.00 -5.59 16 15 C -0.39 -10.79 9.90 30.87 0.31 -10.49 16 16 H 0.11 2.96 5.52 -52.48 -0.29 2.67 16 17 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 18 N -0.88 -25.04 13.96 55.48 0.77 -24.27 16 19 Si 0.91 21.54 28.62 -169.99 -4.86 16.67 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.26 -6.18 7.11 56.52 0.40 -5.78 16 23 C -0.21 -4.27 9.12 -39.42 -0.36 -4.63 16 24 C -0.09 -1.51 9.96 -39.42 -0.39 -1.90 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.10 1.28 5.25 -51.93 -0.27 1.00 16 27 H 0.06 0.62 7.68 -51.93 -0.40 0.22 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.46 7.94 -51.93 -0.41 0.04 16 32 H 0.40 3.51 8.70 -40.82 -0.36 3.16 16 33 H 0.13 2.26 6.45 -52.49 -0.34 1.92 16 34 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 35 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.14 2.98 5.71 -52.49 -0.30 2.68 16 37 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 LS Contribution 314.55 15.07 4.74 4.74 Total: -1.00 -30.97 314.55 -5.58 -36.55 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -4.45 Total: 4.40 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -1.82 Total: -13.90 kcal Atomic # 7 Polarization: -33.24 SS G_CDS: 0.72 Total: -32.52 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: 0.06 Total: -13.80 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.86 Total: 16.67 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.97 -5.58 -36.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324342368.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.906 kcal (2) G-P(sol) polarization free energy of solvation -30.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds