Wall clock time and date at job start Tue Mar 31 2020 06:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46658 * 2 1 4 4 C 1.52996 * 109.47378 * 119.99983 * 2 1 3 5 5 H 1.08999 * 109.46977 * 185.00711 * 4 2 1 6 6 F 1.39910 * 109.46964 * 305.00342 * 4 2 1 7 7 C 1.50697 * 109.47179 * 65.00014 * 4 2 1 8 8 O 1.21290 * 120.00281 * 315.00193 * 7 4 2 9 9 N 1.34775 * 119.99919 * 134.99874 * 7 4 2 10 10 C 1.39993 * 120.00352 * 174.79622 * 9 7 4 11 11 C 1.38921 * 119.99807 * 326.13685 * 10 9 7 12 12 C 1.38004 * 119.99569 * 179.76171 * 11 10 9 13 13 C 1.38908 * 120.00129 * 0.48559 * 12 11 10 14 14 O 1.35784 * 119.99662 * 179.74273 * 13 12 11 15 15 C 1.34813 * 116.99859 * 185.93840 * 14 13 12 16 16 H 1.08003 * 119.99688 * 5.40961 * 15 14 13 17 17 C 1.38623 * 120.00091 * 185.40340 * 15 14 13 18 18 N 1.31576 * 120.00355 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00009 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47354 * 89.99567 * 19 17 15 21 21 H 1.48503 * 109.47346 * 209.99758 * 19 17 15 22 22 H 1.48498 * 109.47036 * 329.99510 * 19 17 15 23 23 C 1.38905 * 120.00152 * 359.76870 * 13 12 11 24 24 C 1.37995 * 120.00431 * 359.97438 * 23 13 12 25 25 H 1.08998 * 109.47345 * 60.00696 * 1 2 3 26 26 H 1.08999 * 109.46630 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47431 * 299.99739 * 1 2 3 28 28 H 1.09003 * 109.47318 * 240.00305 * 2 1 3 29 29 H 1.08999 * 109.46765 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47020 * 300.00386 * 3 2 1 31 31 H 1.09003 * 109.47007 * 60.00115 * 3 2 1 32 32 H 0.96999 * 119.99904 * 354.79781 * 9 7 4 33 33 H 1.07998 * 120.00298 * 359.97438 * 11 10 9 34 34 H 1.08002 * 119.99620 * 180.21354 * 12 11 10 35 35 H 0.97000 * 120.00011 * 180.02562 * 18 17 15 36 36 H 1.08002 * 119.99543 * 179.97438 * 23 13 12 37 37 H 1.08002 * 120.00316 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 3.1264 -0.6442 1.2951 6 9 1.4822 -0.1314 2.3886 7 6 1.6415 -2.1733 1.1889 8 8 0.5143 -2.4797 0.8621 9 7 2.5375 -3.1314 1.4979 10 6 2.1390 -4.4725 1.5480 11 6 0.8598 -4.8014 1.9786 12 6 0.4654 -6.1232 2.0233 13 6 1.3509 -7.1253 1.6474 14 8 0.9644 -8.4261 1.6963 15 6 1.9068 -9.3546 1.4373 16 1 2.9340 -9.0551 1.2903 17 6 1.5575 -10.6938 1.3596 18 7 2.4773 -11.6002 1.1073 19 14 -0.2192 -11.2118 1.6133 20 1 -0.9273 -11.2076 0.3080 21 1 -0.2585 -12.5784 2.1933 22 1 -0.8844 -10.2614 2.5404 23 6 2.6317 -6.7967 1.2218 24 6 3.0244 -5.4748 1.1721 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.4584 -2.8918 1.6857 33 1 0.1729 -4.0226 2.2751 34 1 -0.5302 -6.3786 2.3548 35 1 2.2327 -12.5373 1.0526 36 1 3.3201 -7.5760 0.9300 37 1 4.0204 -5.2194 0.8416 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324342368.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:05 Heat of formation + Delta-G solvation = -106.953868 kcal Electronic energy + Delta-G solvation = -21395.290918 eV Core-core repulsion = 17859.118352 eV Total energy + Delta-G solvation = -3536.172566 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.95952 -41.57520 -40.50267 -38.40019 -36.24190 -35.54355 -34.37852 -31.94949 -30.54027 -28.43099 -28.02039 -27.02721 -24.05889 -23.38588 -21.92333 -21.16056 -19.89140 -19.23486 -18.93059 -18.32115 -17.25517 -16.98622 -16.62156 -16.16274 -15.90398 -15.61944 -15.56056 -15.16828 -14.71293 -14.47802 -14.30043 -14.14891 -14.05245 -13.89028 -13.42229 -13.32628 -13.12394 -12.93144 -12.78055 -12.51943 -12.15693 -11.99369 -11.87840 -11.66539 -11.49067 -11.16538 -10.76051 -10.51218 -9.90557 -8.72736 -8.50294 -6.21307 0.37866 0.46337 1.31901 1.32449 1.40781 1.52151 1.85207 2.28119 2.73574 3.06992 3.08491 3.29749 3.47866 3.67712 3.80862 4.00534 4.06036 4.26522 4.42273 4.44458 4.53412 4.57954 4.65877 4.81103 4.99169 5.01155 5.05510 5.11737 5.15046 5.32781 5.39218 5.39683 5.49135 5.58890 5.73794 5.87162 6.15047 6.36454 6.84471 7.04138 7.58222 8.60970 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.043477 B = 0.003227 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.863114 B = 8673.774409 C = 8948.348837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.110 4.110 3 C -0.144 4.144 4 C 0.093 3.907 5 H 0.146 0.854 6 F -0.198 7.198 7 C 0.482 3.518 8 O -0.536 6.536 9 N -0.641 5.641 10 C 0.068 3.932 11 C -0.075 4.075 12 C -0.176 4.176 13 C 0.116 3.884 14 O -0.244 6.244 15 C -0.397 4.397 16 H 0.087 0.913 17 C 0.012 3.988 18 N -0.921 5.921 19 Si 0.965 3.035 20 H -0.268 1.268 21 H -0.267 1.267 22 H -0.264 1.264 23 C -0.213 4.213 24 C -0.080 4.080 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.049 0.951 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.428 0.572 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.285 0.715 36 H 0.123 0.877 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.715 24.775 -0.943 24.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.129 4.129 3 C -0.201 4.201 4 C 0.054 3.946 5 H 0.164 0.836 6 F -0.179 7.179 7 C 0.268 3.732 8 O -0.413 6.413 9 N -0.289 5.289 10 C -0.026 4.026 11 C -0.095 4.095 12 C -0.196 4.196 13 C 0.066 3.934 14 O -0.151 6.151 15 C -0.473 4.473 16 H 0.105 0.895 17 C -0.186 4.186 18 N -0.561 5.561 19 Si 0.788 3.212 20 H -0.193 1.193 21 H -0.191 1.191 22 H -0.189 1.189 23 C -0.233 4.233 24 C -0.100 4.100 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.115 0.885 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.268 0.732 33 H 0.150 0.850 34 H 0.145 0.855 35 H 0.094 0.906 36 H 0.141 0.859 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.747 24.314 -1.104 24.401 hybrid contribution -0.139 -0.801 0.197 0.836 sum 1.609 23.513 -0.907 23.585 Atomic orbital electron populations 1.22082 0.94943 1.03587 1.01773 1.21616 0.97281 0.98259 0.95782 1.21834 1.02181 0.93182 1.02912 1.21799 1.01603 0.86495 0.84689 0.83619 1.92860 1.88072 1.84334 1.52620 1.21776 0.85510 0.89200 0.76710 1.90668 1.21587 1.83298 1.45704 1.43294 1.14408 1.03501 1.67681 1.17400 0.95143 0.83908 1.06106 1.20749 0.96080 0.94670 0.98039 1.20287 1.00120 0.91022 1.08180 1.19606 0.94085 0.84144 0.95562 1.83546 1.38471 1.12419 1.80706 1.20724 0.89899 0.86727 1.49983 0.89525 1.25211 1.03506 0.94269 0.95640 1.69723 1.35358 1.02410 1.48641 0.85286 0.78607 0.77905 0.79385 1.19321 1.19137 1.18857 1.21174 0.96739 0.97599 1.07801 1.20827 1.00462 0.90200 0.98475 0.91672 0.91552 0.93226 0.88459 0.90315 0.91062 0.92518 0.73217 0.85013 0.85524 0.90565 0.85918 0.82465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.29 8.71 71.98 0.63 -2.66 16 2 C -0.11 -1.59 2.75 -10.79 -0.03 -1.62 16 3 C -0.14 -1.40 9.11 71.98 0.66 -0.75 16 4 C 0.09 1.41 3.46 29.85 0.10 1.51 16 5 H 0.15 0.87 7.98 -2.39 -0.02 0.85 16 6 F -0.20 -3.95 16.03 44.97 0.72 -3.23 16 7 C 0.48 11.01 6.90 87.66 0.61 11.62 16 8 O -0.54 -16.82 11.51 -3.06 -0.04 -16.86 16 9 N -0.64 -13.49 5.34 -303.38 -1.62 -15.11 16 10 C 0.07 2.07 6.27 38.16 0.24 2.31 16 11 C -0.08 -2.68 8.65 22.38 0.19 -2.48 16 12 C -0.18 -7.19 9.98 22.37 0.22 -6.97 16 13 C 0.12 5.39 6.65 22.59 0.15 5.54 16 14 O -0.24 -13.22 8.58 -22.94 -0.20 -13.42 16 15 C -0.40 -23.00 9.90 67.91 0.67 -22.33 16 16 H 0.09 5.15 5.52 -2.91 -0.02 5.14 16 17 C 0.01 0.71 5.49 84.82 0.47 1.18 16 18 N -0.92 -54.31 13.96 21.61 0.30 -54.00 16 19 Si 0.97 45.50 28.62 68.60 1.96 47.47 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 H -0.26 -12.52 7.11 99.48 0.71 -11.81 16 23 C -0.21 -8.89 9.12 22.37 0.20 -8.68 16 24 C -0.08 -2.52 9.96 22.38 0.22 -2.29 16 25 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.07 1.73 5.25 -2.39 -0.01 1.72 16 27 H 0.05 1.02 7.68 -2.39 -0.02 1.00 16 28 H 0.10 1.27 8.14 -2.39 -0.02 1.26 16 29 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.64 7.94 -2.39 -0.02 0.62 16 32 H 0.43 5.11 8.70 -92.71 -0.81 4.30 16 33 H 0.13 4.57 6.45 -2.91 -0.02 4.55 16 34 H 0.13 4.91 8.06 -2.91 -0.02 4.89 16 35 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 36 H 0.12 5.49 5.71 -2.91 -0.02 5.47 16 37 H 0.16 3.60 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -70.76 314.55 5.76 -65.00 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.30 Total: 15.77 kcal Atomic # 6 Polarization: -29.96 SS G_CDS: 4.33 Total: -25.63 kcal Atomic # 7 Polarization: -67.79 SS G_CDS: -1.32 Total: -69.11 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -0.23 Total: -30.28 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.72 Total: -3.23 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.96 Total: 47.47 kcal Total: -70.76 5.76 -65.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324342368.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.955 kcal (2) G-P(sol) polarization free energy of solvation -70.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds