Wall clock time and date at job start Tue Mar 31 2020 06:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47022 * 2 1 4 4 C 1.53001 * 109.47180 * 119.99409 * 2 1 3 5 5 H 1.08996 * 109.47296 * 305.19818 * 4 2 1 6 6 F 1.39899 * 109.47172 * 185.18924 * 4 2 1 7 7 C 1.50706 * 109.46638 * 65.19360 * 4 2 1 8 8 O 1.21293 * 120.00042 * 48.58503 * 7 4 2 9 9 N 1.34779 * 120.00168 * 228.57774 * 7 4 2 10 10 C 1.39983 * 120.00261 * 175.95254 * 9 7 4 11 11 C 1.38918 * 120.00519 * 215.24633 * 10 9 7 12 12 C 1.38004 * 120.00373 * 179.97438 * 11 10 9 13 13 C 1.38911 * 119.99833 * 0.02960 * 12 11 10 14 14 O 1.35774 * 119.99826 * 179.97438 * 13 12 11 15 15 C 1.34814 * 116.99925 * 5.66330 * 14 13 12 16 16 H 1.07995 * 120.00001 * 354.92430 * 15 14 13 17 17 C 1.38628 * 119.99787 * 174.93157 * 15 14 13 18 18 N 1.31579 * 120.00122 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99816 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47161 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.46961 * 119.99842 * 19 17 15 22 22 H 1.48504 * 109.47297 * 239.99701 * 19 17 15 23 23 C 1.38914 * 120.00052 * 0.22432 * 13 12 11 24 24 C 1.38001 * 120.00363 * 359.49632 * 23 13 12 25 25 H 1.08999 * 109.47467 * 300.00083 * 1 2 3 26 26 H 1.09003 * 109.47173 * 60.00469 * 1 2 3 27 27 H 1.09007 * 109.46929 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47467 * 239.99917 * 2 1 3 29 29 H 1.08996 * 109.47193 * 185.00596 * 3 2 1 30 30 H 1.09006 * 109.46713 * 305.00243 * 3 2 1 31 31 H 1.09003 * 109.47314 * 64.99914 * 3 2 1 32 32 H 0.97004 * 119.99545 * 355.96174 * 9 7 4 33 33 H 1.07998 * 120.00037 * 359.96266 * 11 10 9 34 34 H 1.07992 * 120.00074 * 179.97438 * 12 11 10 35 35 H 0.97003 * 119.99880 * 180.02562 * 18 17 15 36 36 H 1.07997 * 119.99630 * 179.74800 * 23 13 12 37 37 H 1.07997 * 120.00019 * 180.25686 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6027 -0.2638 2.1368 6 9 3.4339 -0.6187 1.3105 7 6 1.6454 -2.1742 1.1867 8 8 1.8507 -2.8156 0.1779 9 7 1.0644 -2.7613 2.2518 10 6 0.6209 -4.0862 2.1654 11 6 -0.5297 -4.4789 2.8376 12 6 -0.9672 -5.7849 2.7520 13 6 -0.2566 -6.7071 1.9941 14 8 -0.6867 -7.9922 1.9103 15 6 -1.8703 -8.2804 2.4879 16 1 -2.3910 -7.5253 3.0580 17 6 -2.4189 -9.5460 2.3501 18 7 -1.7846 -10.4659 1.6552 19 14 -4.0585 -9.9455 3.1510 20 1 -4.5624 -8.7485 3.8710 21 1 -5.0360 -10.3432 2.1061 22 1 -3.8804 -11.0627 4.1130 23 6 0.8968 -6.3158 1.3262 24 6 1.3312 -5.0084 1.4071 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 3.1262 1.4439 -0.0897 30 1 1.6052 1.9816 -0.8419 31 1 1.7516 1.9299 0.9314 32 1 0.9534 -2.2655 3.0782 33 1 -1.0818 -3.7621 3.4273 34 1 -1.8614 -6.0903 3.2748 35 1 -2.1687 -11.3514 1.5584 36 1 1.4515 -7.0338 0.7403 37 1 2.2256 -4.7032 0.8844 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324342370.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:08 Heat of formation + Delta-G solvation = -93.366087 kcal Electronic energy + Delta-G solvation = -21360.507793 eV Core-core repulsion = 17824.924437 eV Total energy + Delta-G solvation = -3535.583356 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.07625 -40.19959 -38.73151 -36.69926 -35.64731 -34.10161 -32.23056 -30.26904 -29.06414 -27.43258 -26.92590 -25.33620 -22.50950 -22.02545 -20.73273 -20.25126 -18.28945 -17.77233 -17.41320 -16.80224 -16.27604 -15.65824 -15.05412 -14.80251 -14.60191 -14.38772 -13.97471 -13.64316 -13.54098 -13.19957 -13.03102 -12.88452 -12.59880 -12.48476 -12.38132 -11.89855 -11.60967 -11.58960 -11.42037 -11.35540 -11.08092 -10.91175 -10.74927 -10.46468 -9.79709 -9.64542 -9.27797 -8.75603 -8.25915 -7.00723 -6.47869 -4.06125 1.94196 2.15402 2.63336 2.97760 3.10699 3.12009 3.17327 3.93951 4.06204 4.28785 4.40955 4.50146 4.57037 4.83504 5.06079 5.15202 5.22638 5.28814 5.34422 5.49692 5.50990 5.55557 5.73203 5.76846 5.94644 5.96384 6.06931 6.15441 6.21294 6.75720 6.78079 6.90142 7.09604 7.17636 7.35549 7.55873 7.71626 7.96408 8.15952 8.97342 9.67089 10.69996 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.039408 B = 0.003203 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.342347 B = 8740.727863 C = 9003.071803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.147 4.147 4 C 0.089 3.911 5 H 0.098 0.902 6 F -0.190 7.190 7 C 0.484 3.516 8 O -0.507 6.507 9 N -0.650 5.650 10 C 0.027 3.973 11 C -0.086 4.086 12 C -0.221 4.221 13 C 0.150 3.850 14 O -0.175 6.175 15 C -0.392 4.392 16 H 0.093 0.907 17 C 0.039 3.961 18 N -0.860 5.860 19 Si 0.942 3.058 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.179 4.179 24 C -0.065 4.065 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.403 0.597 33 H 0.111 0.889 34 H 0.132 0.868 35 H 0.270 0.730 36 H 0.122 0.878 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.378 20.657 1.765 21.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.133 4.133 3 C -0.204 4.204 4 C 0.049 3.951 5 H 0.115 0.885 6 F -0.171 7.171 7 C 0.269 3.731 8 O -0.381 6.381 9 N -0.295 5.295 10 C -0.065 4.065 11 C -0.106 4.106 12 C -0.241 4.241 13 C 0.095 3.905 14 O -0.078 6.078 15 C -0.468 4.468 16 H 0.110 0.890 17 C -0.166 4.166 18 N -0.495 5.495 19 Si 0.767 3.233 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.199 4.199 24 C -0.085 4.085 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.114 0.886 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.238 0.762 33 H 0.129 0.871 34 H 0.150 0.850 35 H 0.080 0.920 36 H 0.140 0.860 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.621 19.763 0.856 20.110 hybrid contribution -0.863 0.061 0.928 1.268 sum 2.758 19.824 1.783 20.094 Atomic orbital electron populations 1.21824 0.93428 1.02890 1.02623 1.21605 0.97323 0.97013 0.97365 1.21816 1.01838 0.94396 1.02342 1.21681 0.77595 0.93836 1.01987 0.88460 1.92873 1.29641 1.96813 1.97748 1.20930 0.79301 0.89169 0.83732 1.90737 1.51972 1.64419 1.30982 1.43254 1.59283 1.12710 1.14288 1.17249 0.97979 0.82998 1.08289 1.20475 0.93850 0.96100 1.00153 1.20978 1.03792 0.93147 1.06146 1.19427 0.92990 0.85385 0.92664 1.83992 1.36100 1.20233 1.67481 1.21373 0.95559 0.98388 1.31515 0.88965 1.25307 0.99542 0.94743 0.96969 1.70060 1.38115 1.04013 1.37325 0.85637 0.80080 0.78936 0.78695 1.19093 1.20115 1.20128 1.20156 0.98458 0.95893 1.05401 1.20728 0.98832 0.91210 0.97725 0.92198 0.91398 0.91907 0.88607 0.91845 0.91693 0.92376 0.76201 0.87075 0.85012 0.91999 0.86031 0.85393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.01 37.16 0.33 -0.95 16 2 C -0.11 -1.07 2.64 -90.62 -0.24 -1.31 16 3 C -0.15 -1.06 8.95 37.16 0.33 -0.73 16 4 C 0.09 0.91 3.35 -27.88 -0.09 0.82 16 5 H 0.10 0.66 7.98 -51.93 -0.41 0.24 16 6 F -0.19 -2.30 16.44 2.25 0.04 -2.26 16 7 C 0.48 6.79 5.95 -10.98 -0.07 6.73 16 8 O -0.51 -9.19 13.97 5.55 0.08 -9.11 16 9 N -0.65 -8.66 5.34 -9.82 -0.05 -8.71 16 10 C 0.03 0.47 6.30 -83.63 -0.53 -0.06 16 11 C -0.09 -1.50 9.96 -39.42 -0.39 -1.89 16 12 C -0.22 -4.65 9.16 -39.42 -0.36 -5.02 16 13 C 0.15 3.61 6.65 -39.08 -0.26 3.35 16 14 O -0.17 -4.97 9.75 0.02 0.00 -4.97 16 15 C -0.39 -10.82 9.48 30.88 0.29 -10.53 16 16 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 17 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 18 N -0.86 -25.14 13.67 55.48 0.76 -24.38 16 19 Si 0.94 20.24 29.55 -169.99 -5.02 15.22 16 20 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 21 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 22 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 23 C -0.18 -3.95 9.98 -39.42 -0.39 -4.34 16 24 C -0.07 -1.29 8.68 -39.41 -0.34 -1.63 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.68 7.39 -51.93 -0.38 0.30 16 28 H 0.10 1.08 7.78 -51.93 -0.40 0.68 16 29 H 0.06 0.49 7.84 -51.93 -0.41 0.08 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.40 3.75 8.70 -40.82 -0.36 3.40 16 33 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 34 H 0.13 2.74 5.63 -52.49 -0.30 2.45 16 35 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.12 2.60 8.06 -52.49 -0.42 2.18 16 37 H 0.13 2.51 6.25 -52.49 -0.33 2.18 16 LS Contribution 319.43 15.07 4.81 4.81 Total: -1.00 -32.61 319.43 -5.73 -38.34 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -4.53 Total: 5.65 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -1.81 Total: -14.59 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: 0.71 Total: -33.09 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: 0.08 Total: -14.09 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.61 -5.73 -38.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324342370.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.022 kcal (2) G-P(sol) polarization free energy of solvation -32.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds