Wall clock time and date at job start Tue Mar 31 2020 06:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47022 * 2 1 4 4 C 1.53001 * 109.47180 * 119.99409 * 2 1 3 5 5 H 1.08996 * 109.47296 * 305.19818 * 4 2 1 6 6 F 1.39899 * 109.47172 * 185.18924 * 4 2 1 7 7 C 1.50706 * 109.46638 * 65.19360 * 4 2 1 8 8 O 1.21293 * 120.00042 * 48.58503 * 7 4 2 9 9 N 1.34779 * 120.00168 * 228.57774 * 7 4 2 10 10 C 1.39983 * 120.00261 * 175.95254 * 9 7 4 11 11 C 1.38918 * 120.00519 * 215.24633 * 10 9 7 12 12 C 1.38004 * 120.00373 * 179.97438 * 11 10 9 13 13 C 1.38911 * 119.99833 * 0.02960 * 12 11 10 14 14 O 1.35774 * 119.99826 * 179.97438 * 13 12 11 15 15 C 1.34814 * 116.99925 * 5.66330 * 14 13 12 16 16 H 1.07995 * 120.00001 * 354.92430 * 15 14 13 17 17 C 1.38628 * 119.99787 * 174.93157 * 15 14 13 18 18 N 1.31579 * 120.00122 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99816 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47161 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.46961 * 119.99842 * 19 17 15 22 22 H 1.48504 * 109.47297 * 239.99701 * 19 17 15 23 23 C 1.38914 * 120.00052 * 0.22432 * 13 12 11 24 24 C 1.38001 * 120.00363 * 359.49632 * 23 13 12 25 25 H 1.08999 * 109.47467 * 300.00083 * 1 2 3 26 26 H 1.09003 * 109.47173 * 60.00469 * 1 2 3 27 27 H 1.09007 * 109.46929 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47467 * 239.99917 * 2 1 3 29 29 H 1.08996 * 109.47193 * 185.00596 * 3 2 1 30 30 H 1.09006 * 109.46713 * 305.00243 * 3 2 1 31 31 H 1.09003 * 109.47314 * 64.99914 * 3 2 1 32 32 H 0.97004 * 119.99545 * 355.96174 * 9 7 4 33 33 H 1.07998 * 120.00037 * 359.96266 * 11 10 9 34 34 H 1.07992 * 120.00074 * 179.97438 * 12 11 10 35 35 H 0.97003 * 119.99880 * 180.02562 * 18 17 15 36 36 H 1.07997 * 119.99630 * 179.74800 * 23 13 12 37 37 H 1.07997 * 120.00019 * 180.25686 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6027 -0.2638 2.1368 6 9 3.4339 -0.6187 1.3105 7 6 1.6454 -2.1742 1.1867 8 8 1.8507 -2.8156 0.1779 9 7 1.0644 -2.7613 2.2518 10 6 0.6209 -4.0862 2.1654 11 6 -0.5297 -4.4789 2.8376 12 6 -0.9672 -5.7849 2.7520 13 6 -0.2566 -6.7071 1.9941 14 8 -0.6867 -7.9922 1.9103 15 6 -1.8703 -8.2804 2.4879 16 1 -2.3910 -7.5253 3.0580 17 6 -2.4189 -9.5460 2.3501 18 7 -1.7846 -10.4659 1.6552 19 14 -4.0585 -9.9455 3.1510 20 1 -4.5624 -8.7485 3.8710 21 1 -5.0360 -10.3432 2.1061 22 1 -3.8804 -11.0627 4.1130 23 6 0.8968 -6.3158 1.3262 24 6 1.3312 -5.0084 1.4071 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 3.1262 1.4439 -0.0897 30 1 1.6052 1.9816 -0.8419 31 1 1.7516 1.9299 0.9314 32 1 0.9534 -2.2655 3.0782 33 1 -1.0818 -3.7621 3.4273 34 1 -1.8614 -6.0903 3.2748 35 1 -2.1687 -11.3514 1.5584 36 1 1.4515 -7.0338 0.7403 37 1 2.2256 -4.7032 0.8844 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324342370.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:08 Heat of formation + Delta-G solvation = -115.008655 kcal Electronic energy + Delta-G solvation = -21361.446285 eV Core-core repulsion = 17824.924437 eV Total energy + Delta-G solvation = -3536.521848 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.97417 -41.55569 -40.39879 -38.28215 -36.47320 -35.54171 -34.17863 -31.91380 -30.36979 -28.32604 -27.91976 -27.20539 -24.05497 -23.43096 -22.02775 -21.21872 -19.97145 -19.07956 -18.96705 -18.17205 -17.41551 -16.63448 -16.38943 -16.21183 -16.14390 -15.66014 -15.52052 -15.19964 -14.95595 -14.57136 -14.18978 -14.00917 -13.68338 -13.59632 -13.42299 -13.26917 -13.21404 -13.01840 -12.73658 -12.45267 -12.11091 -12.07369 -12.04043 -11.62223 -11.40658 -11.14618 -10.83020 -10.57260 -9.88541 -8.68519 -8.46473 -6.14342 0.43419 0.49704 1.34606 1.37249 1.47549 1.56001 1.84645 2.18618 2.79693 3.13259 3.25591 3.43036 3.49332 3.63273 3.80536 4.02875 4.09632 4.16962 4.44730 4.47112 4.52621 4.56952 4.70153 4.78020 4.89049 4.96239 5.04518 5.15162 5.15940 5.24570 5.31272 5.37089 5.42011 5.50880 5.64378 6.01450 6.10278 6.36047 6.97462 7.02891 7.77716 8.77001 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.039408 B = 0.003203 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.342347 B = 8740.727863 C = 9003.071803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C -0.142 4.142 4 C 0.094 3.906 5 H 0.148 0.852 6 F -0.200 7.200 7 C 0.483 3.517 8 O -0.552 6.552 9 N -0.637 5.637 10 C 0.055 3.945 11 C -0.071 4.071 12 C -0.221 4.221 13 C 0.112 3.888 14 O -0.231 6.231 15 C -0.412 4.412 16 H 0.109 0.891 17 C -0.026 4.026 18 N -0.923 5.923 19 Si 1.022 2.978 20 H -0.245 1.245 21 H -0.271 1.271 22 H -0.270 1.270 23 C -0.193 4.193 24 C -0.074 4.074 25 H 0.087 0.913 26 H 0.074 0.926 27 H 0.035 0.965 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.429 0.571 33 H 0.164 0.836 34 H 0.135 0.865 35 H 0.272 0.728 36 H 0.110 0.890 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.129 24.808 3.908 25.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.134 4.134 3 C -0.199 4.199 4 C 0.055 3.945 5 H 0.166 0.834 6 F -0.180 7.180 7 C 0.269 3.731 8 O -0.429 6.429 9 N -0.284 5.284 10 C -0.038 4.038 11 C -0.091 4.091 12 C -0.240 4.240 13 C 0.061 3.939 14 O -0.137 6.137 15 C -0.488 4.488 16 H 0.126 0.874 17 C -0.223 4.223 18 N -0.561 5.561 19 Si 0.841 3.159 20 H -0.168 1.168 21 H -0.197 1.197 22 H -0.195 1.195 23 C -0.213 4.213 24 C -0.094 4.094 25 H 0.106 0.894 26 H 0.093 0.907 27 H 0.054 0.946 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.269 0.731 33 H 0.182 0.818 34 H 0.153 0.847 35 H 0.081 0.919 36 H 0.128 0.872 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.402 24.011 3.034 24.321 hybrid contribution -0.261 -0.892 0.198 0.950 sum 2.142 23.119 3.233 23.442 Atomic orbital electron populations 1.21815 0.92561 1.01593 1.04462 1.21618 0.97990 0.98036 0.95755 1.21795 1.01300 0.92830 1.03971 1.21896 0.77124 0.90837 1.04637 0.83432 1.92862 1.30701 1.96586 1.97898 1.21775 0.77818 0.90723 0.82808 1.90735 1.53420 1.65941 1.32833 1.43183 1.58663 1.10969 1.15630 1.17372 0.96795 0.84424 1.05258 1.20867 0.93398 0.95365 0.99461 1.21160 1.03515 0.94128 1.05223 1.19869 0.94269 0.85239 0.94549 1.83963 1.37272 1.22618 1.69892 1.21939 0.95831 0.99245 1.31811 0.87386 1.26661 1.03832 0.94259 0.97538 1.70218 1.40771 1.04756 1.40367 0.84488 0.74426 0.79323 0.77703 1.16840 1.19659 1.19503 1.20248 0.98369 0.96946 1.05690 1.20813 0.99308 0.90750 0.98502 0.89403 0.90674 0.94604 0.91589 0.92656 0.90742 0.90203 0.73107 0.81806 0.84736 0.91875 0.87170 0.85421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.01 71.98 0.65 -1.39 16 2 C -0.11 -1.84 2.64 -10.79 -0.03 -1.87 16 3 C -0.14 -1.55 8.95 71.98 0.64 -0.91 16 4 C 0.09 1.58 3.35 29.85 0.10 1.68 16 5 H 0.15 1.07 7.98 -2.39 -0.02 1.05 16 6 F -0.20 -4.27 16.44 44.97 0.74 -3.53 16 7 C 0.48 12.27 5.95 87.66 0.52 12.79 16 8 O -0.55 -19.69 13.97 -3.07 -0.04 -19.74 16 9 N -0.64 -14.43 5.34 -303.37 -1.62 -16.04 16 10 C 0.05 1.77 6.30 38.17 0.24 2.01 16 11 C -0.07 -2.24 9.96 22.38 0.22 -2.01 16 12 C -0.22 -9.10 9.16 22.38 0.20 -8.90 16 13 C 0.11 5.59 6.65 22.59 0.15 5.74 16 14 O -0.23 -13.95 9.75 -22.84 -0.22 -14.17 16 15 C -0.41 -23.62 9.48 67.91 0.64 -22.98 16 16 H 0.11 5.53 5.20 -2.91 -0.02 5.51 16 17 C -0.03 -1.45 5.49 84.82 0.47 -0.98 16 18 N -0.92 -56.90 13.67 21.61 0.30 -56.61 16 19 Si 1.02 42.09 29.55 68.60 2.03 44.12 16 20 H -0.25 -9.09 7.11 99.48 0.71 -8.39 16 21 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 22 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 23 C -0.19 -8.88 9.98 22.38 0.22 -8.66 16 24 C -0.07 -2.92 8.68 22.38 0.19 -2.72 16 25 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.03 0.69 7.39 -2.38 -0.02 0.67 16 28 H 0.07 1.45 7.78 -2.39 -0.02 1.43 16 29 H 0.05 0.71 7.84 -2.39 -0.02 0.69 16 30 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.08 0.55 8.14 -2.39 -0.02 0.54 16 32 H 0.43 5.49 8.70 -92.71 -0.81 4.69 16 33 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 34 H 0.14 5.44 5.63 -2.91 -0.02 5.42 16 35 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 36 H 0.11 5.15 8.06 -2.91 -0.02 5.13 16 37 H 0.13 5.07 6.25 -2.91 -0.02 5.06 16 Total: -1.00 -77.90 319.43 5.70 -72.19 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 0.29 Total: 21.97 kcal Atomic # 6 Polarization: -32.42 SS G_CDS: 4.23 Total: -28.19 kcal Atomic # 7 Polarization: -71.33 SS G_CDS: -1.32 Total: -72.65 kcal Atomic # 8 Polarization: -33.64 SS G_CDS: -0.27 Total: -33.90 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.74 Total: -3.53 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -77.90 5.70 -72.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324342370.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.817 kcal (2) G-P(sol) polarization free energy of solvation -77.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds