Wall clock time and date at job start Tue Mar 31 2020 05:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35737 * 116.99774 * 2 1 4 4 C 1.39288 * 120.84786 * 0.29754 * 3 2 1 5 5 C 1.37945 * 119.08950 * 180.23884 * 4 3 2 6 6 C 1.50706 * 119.58833 * 179.73232 * 5 4 3 7 7 N 1.31979 * 120.82612 * 359.45507 * 5 4 3 8 8 C 1.31947 * 121.86273 * 0.27910 * 7 5 4 9 9 C 1.50696 * 119.58728 * 180.02562 * 8 7 5 10 10 S 1.81402 * 109.47458 * 89.99852 * 9 8 7 11 11 C 1.81390 * 103.00267 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47165 * 179.97438 * 11 10 9 13 13 C 1.53008 * 109.47431 * 179.97438 * 12 11 10 14 14 C 1.50693 * 109.47354 * 179.97438 * 13 12 11 15 15 H 1.08009 * 120.00012 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00307 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99607 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00293 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47151 * 90.00160 * 18 16 14 20 20 H 1.48498 * 109.47031 * 210.00099 * 18 16 14 21 21 H 1.48500 * 109.47478 * 330.00427 * 18 16 14 22 22 C 1.37993 * 120.82129 * 359.97438 * 8 7 5 23 23 H 1.08996 * 109.47213 * 299.99736 * 1 2 3 24 24 H 1.09003 * 109.47294 * 60.00418 * 1 2 3 25 25 H 1.09005 * 109.46719 * 180.02562 * 1 2 3 26 26 H 1.07997 * 120.45072 * 359.97438 * 4 3 2 27 27 H 1.08999 * 109.47015 * 269.73000 * 6 5 4 28 28 H 1.09000 * 109.46646 * 29.72153 * 6 5 4 29 29 H 1.09000 * 109.47248 * 149.72870 * 6 5 4 30 30 H 1.09004 * 109.47134 * 209.99512 * 9 8 7 31 31 H 1.09001 * 109.47338 * 330.00029 * 9 8 7 32 32 H 1.08997 * 109.47457 * 299.99572 * 11 10 9 33 33 H 1.08997 * 109.47361 * 59.99779 * 11 10 9 34 34 H 1.09004 * 109.47203 * 299.99812 * 12 11 10 35 35 H 1.09003 * 109.47143 * 60.00122 * 12 11 10 36 36 H 1.09004 * 109.46840 * 300.00115 * 13 12 11 37 37 H 1.09003 * 109.46791 * 59.99988 * 13 12 11 38 38 H 0.97002 * 120.00284 * 179.97438 * 17 16 14 39 39 H 1.07999 * 120.45158 * 180.02562 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.3039 2.3887 0.0062 5 6 1.9675 3.5980 0.0010 6 6 1.1765 4.8808 0.0015 7 7 3.2864 3.6457 0.0010 8 6 4.0230 2.5510 0.0005 9 6 5.5256 2.6652 0.0012 10 16 6.1280 2.7099 1.7117 11 6 7.9253 2.8459 1.5080 12 6 8.5922 2.8963 2.8841 13 6 10.1083 3.0103 2.7123 14 6 10.7650 3.0606 4.0677 15 1 10.1615 3.0153 4.9623 16 6 12.1365 3.1634 4.1659 17 7 12.8715 3.2170 3.0767 18 14 12.9505 3.2264 5.8460 19 1 13.2708 1.8469 6.2929 20 1 14.2015 4.0220 5.7603 21 1 12.0264 3.8604 6.8203 22 6 3.4345 1.3028 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2244 2.3566 0.0107 27 1 0.9858 5.1905 -1.0261 28 1 0.2283 4.7227 0.5152 29 1 1.7434 5.6570 0.5156 30 1 5.9556 1.8056 -0.5130 31 1 5.8207 3.5805 -0.5119 32 1 8.2949 1.9816 0.9563 33 1 8.1607 3.7564 0.9570 34 1 8.2226 3.7609 3.4355 35 1 8.3568 1.9859 3.4354 36 1 10.4775 2.1455 2.1611 37 1 10.3440 3.9205 2.1608 38 1 13.8363 3.2897 3.1456 39 1 4.0431 0.4107 0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324958316.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:33 Heat of formation + Delta-G solvation = -28.622781 kcal Electronic energy + Delta-G solvation = -18301.066760 eV Core-core repulsion = 15334.504061 eV Total energy + Delta-G solvation = -2966.562699 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.96633 -38.70258 -34.42582 -34.02026 -31.99691 -31.88180 -29.40523 -28.29807 -27.47936 -26.64261 -23.42974 -22.38586 -22.03418 -20.19437 -17.99032 -17.45123 -16.45402 -16.28827 -15.96323 -15.72999 -14.88302 -14.76635 -14.53171 -14.49776 -14.30942 -13.65817 -13.44165 -13.07467 -12.64269 -12.62978 -12.49692 -12.38523 -11.89709 -11.67085 -11.64859 -11.44735 -10.87852 -10.85414 -10.52000 -9.86615 -9.76240 -9.72918 -9.28743 -9.16308 -9.09877 -8.96654 -8.34661 -7.38359 -5.99765 -4.02037 0.66735 1.09150 2.00173 2.73729 2.88172 3.33756 3.39724 3.43951 3.60739 3.89225 4.25702 4.47381 4.52143 4.65961 4.69485 4.82427 4.85911 5.01629 5.11866 5.24700 5.31443 5.35876 5.36215 5.44046 5.54862 5.66694 5.68435 5.75897 5.87256 6.16259 6.26582 6.58796 6.74957 6.86207 7.04806 7.65879 7.78318 7.84620 7.99427 8.41485 9.04399 9.62006 11.11615 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.033501 B = 0.002508 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.590863 B =11163.771719 C =11478.054770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.310 6.310 3 C 0.171 3.829 4 C -0.264 4.264 5 C 0.167 3.833 6 C -0.104 4.104 7 N -0.493 5.493 8 C 0.190 3.810 9 C -0.045 4.045 10 S -0.254 6.254 11 C -0.075 4.075 12 C -0.095 4.095 13 C 0.028 3.972 14 C -0.520 4.520 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.194 4.194 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.103 0.897 26 H 0.138 0.862 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.018 0.982 37 H 0.018 0.982 38 H 0.261 0.739 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.934 -3.020 -10.061 28.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.221 6.221 3 C 0.118 3.882 4 C -0.286 4.286 5 C 0.029 3.971 6 C -0.162 4.162 7 N -0.208 5.208 8 C 0.053 3.947 9 C -0.193 4.193 10 S -0.025 6.025 11 C -0.223 4.223 12 C -0.134 4.134 13 C -0.011 4.011 14 C -0.558 4.558 15 H 0.075 0.925 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.721 3.279 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.216 4.216 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.122 0.878 26 H 0.156 0.844 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.070 0.930 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -26.860 -2.469 -9.196 28.497 hybrid contribution 0.559 -0.709 -0.284 0.947 sum -26.301 -3.178 -9.480 28.137 Atomic orbital electron populations 1.23138 0.77803 1.04368 1.01641 1.86080 1.21871 1.26264 1.87851 1.19234 0.92222 0.84493 0.92254 1.21981 1.01263 0.92642 1.12684 1.21045 0.89604 0.94666 0.91828 1.20736 0.98626 0.93624 1.03175 1.67349 1.06287 1.31771 1.15351 1.20172 0.94434 0.87612 0.92505 1.22148 0.91815 1.06477 0.98888 1.87100 1.09204 1.97605 1.08607 1.23677 0.89929 1.04465 1.04229 1.21467 0.98637 1.01600 0.91666 1.19106 0.87274 0.97368 0.97381 1.21228 0.91717 1.50264 0.92615 0.92548 1.25023 0.97520 0.95299 0.96636 1.69962 1.05477 1.50622 1.27483 0.86569 0.78883 0.78034 0.84387 1.20641 1.21219 1.19824 1.21225 0.92045 0.99683 1.08673 0.92298 0.92385 0.87821 0.84419 0.90226 0.90758 0.89928 0.88387 0.88023 0.90399 0.90337 0.92338 0.92389 0.96403 0.96379 0.92981 0.83740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.84 101.05 0.99 1.13 16 2 O -0.31 -3.06 10.51 -18.92 -0.20 -3.26 16 3 C 0.17 1.90 6.74 -38.82 -0.26 1.64 16 4 C -0.26 -2.56 8.74 -39.30 -0.34 -2.91 16 5 C 0.17 1.84 6.78 -82.63 -0.56 1.28 16 6 C -0.10 -0.79 10.17 36.01 0.37 -0.43 16 7 N -0.49 -6.72 10.19 -5.81 -0.06 -6.78 16 8 C 0.19 2.53 6.04 -82.63 -0.50 2.03 16 9 C -0.05 -0.59 6.22 36.00 0.22 -0.37 16 10 S -0.25 -4.15 21.72 -107.50 -2.33 -6.49 16 11 C -0.07 -1.32 5.94 37.16 0.22 -1.10 16 12 C -0.09 -2.01 5.16 -26.73 -0.14 -2.15 16 13 C 0.03 0.72 4.97 -27.88 -0.14 0.58 16 14 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 15 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 18 Si 0.89 21.90 29.54 -169.99 -5.02 16.87 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 22 C -0.19 -2.36 9.70 -39.30 -0.38 -2.75 16 23 H 0.06 0.27 7.70 -51.93 -0.40 -0.13 16 24 H 0.06 0.25 7.72 -51.93 -0.40 -0.16 16 25 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.14 0.91 6.47 -52.49 -0.34 0.57 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.10 1.09 8.08 -51.92 -0.42 0.67 16 31 H 0.10 1.30 8.14 -51.92 -0.42 0.88 16 32 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 33 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 344.99 15.07 5.20 5.20 Total: -1.00 -32.68 344.99 -8.78 -41.46 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: -6.17 Total: -3.98 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -0.93 Total: -16.71 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: 0.68 Total: -33.10 kcal Atomic # 8 Polarization: -3.06 SS G_CDS: -0.20 Total: -3.26 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: -4.15 SS G_CDS: -2.33 Total: -6.49 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.68 -8.78 -41.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324958316.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.838 kcal (2) G-P(sol) polarization free energy of solvation -32.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds