Wall clock time and date at job start Tue Mar 31 2020 05:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35737 * 116.99774 * 2 1 4 4 C 1.39288 * 120.84786 * 0.29754 * 3 2 1 5 5 C 1.37945 * 119.08950 * 180.23884 * 4 3 2 6 6 C 1.50706 * 119.58833 * 179.73232 * 5 4 3 7 7 N 1.31979 * 120.82612 * 359.45507 * 5 4 3 8 8 C 1.31947 * 121.86273 * 0.27910 * 7 5 4 9 9 C 1.50696 * 119.58728 * 180.02562 * 8 7 5 10 10 S 1.81402 * 109.47458 * 89.99852 * 9 8 7 11 11 C 1.81390 * 103.00267 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47165 * 179.97438 * 11 10 9 13 13 C 1.53008 * 109.47431 * 179.97438 * 12 11 10 14 14 C 1.50693 * 109.47354 * 179.97438 * 13 12 11 15 15 H 1.08009 * 120.00012 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00307 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99607 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00293 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47151 * 90.00160 * 18 16 14 20 20 H 1.48498 * 109.47031 * 210.00099 * 18 16 14 21 21 H 1.48500 * 109.47478 * 330.00427 * 18 16 14 22 22 C 1.37993 * 120.82129 * 359.97438 * 8 7 5 23 23 H 1.08996 * 109.47213 * 299.99736 * 1 2 3 24 24 H 1.09003 * 109.47294 * 60.00418 * 1 2 3 25 25 H 1.09005 * 109.46719 * 180.02562 * 1 2 3 26 26 H 1.07997 * 120.45072 * 359.97438 * 4 3 2 27 27 H 1.08999 * 109.47015 * 269.73000 * 6 5 4 28 28 H 1.09000 * 109.46646 * 29.72153 * 6 5 4 29 29 H 1.09000 * 109.47248 * 149.72870 * 6 5 4 30 30 H 1.09004 * 109.47134 * 209.99512 * 9 8 7 31 31 H 1.09001 * 109.47338 * 330.00029 * 9 8 7 32 32 H 1.08997 * 109.47457 * 299.99572 * 11 10 9 33 33 H 1.08997 * 109.47361 * 59.99779 * 11 10 9 34 34 H 1.09004 * 109.47203 * 299.99812 * 12 11 10 35 35 H 1.09003 * 109.47143 * 60.00122 * 12 11 10 36 36 H 1.09004 * 109.46840 * 300.00115 * 13 12 11 37 37 H 1.09003 * 109.46791 * 59.99988 * 13 12 11 38 38 H 0.97002 * 120.00284 * 179.97438 * 17 16 14 39 39 H 1.07999 * 120.45158 * 180.02562 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.3039 2.3887 0.0062 5 6 1.9675 3.5980 0.0010 6 6 1.1765 4.8808 0.0015 7 7 3.2864 3.6457 0.0010 8 6 4.0230 2.5510 0.0005 9 6 5.5256 2.6652 0.0012 10 16 6.1280 2.7099 1.7117 11 6 7.9253 2.8459 1.5080 12 6 8.5922 2.8963 2.8841 13 6 10.1083 3.0103 2.7123 14 6 10.7650 3.0606 4.0677 15 1 10.1615 3.0153 4.9623 16 6 12.1365 3.1634 4.1659 17 7 12.8715 3.2170 3.0767 18 14 12.9505 3.2264 5.8460 19 1 13.2708 1.8469 6.2929 20 1 14.2015 4.0220 5.7603 21 1 12.0264 3.8604 6.8203 22 6 3.4345 1.3028 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2244 2.3566 0.0107 27 1 0.9858 5.1905 -1.0261 28 1 0.2283 4.7227 0.5152 29 1 1.7434 5.6570 0.5156 30 1 5.9556 1.8056 -0.5130 31 1 5.8207 3.5805 -0.5119 32 1 8.2949 1.9816 0.9563 33 1 8.1607 3.7564 0.9570 34 1 8.2226 3.7609 3.4355 35 1 8.3568 1.9859 3.4354 36 1 10.4775 2.1455 2.1611 37 1 10.3440 3.9205 2.1608 38 1 13.8363 3.2897 3.1456 39 1 4.0431 0.4107 0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324958316.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:32 Heat of formation + Delta-G solvation = -47.459692 kcal Electronic energy + Delta-G solvation = -18301.883590 eV Core-core repulsion = 15334.504061 eV Total energy + Delta-G solvation = -2967.379529 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.75638 -39.43112 -36.36165 -34.84734 -34.04495 -32.67273 -30.28247 -29.38492 -28.83873 -27.41686 -25.36599 -23.13881 -23.01699 -21.97049 -18.76277 -18.51794 -18.24026 -17.18440 -16.84680 -16.74427 -16.54419 -16.23912 -15.72816 -15.42548 -15.13680 -14.72485 -14.43284 -14.35607 -14.14072 -13.71889 -13.43311 -13.25244 -13.12149 -13.01391 -12.76216 -12.73439 -12.45714 -12.31577 -12.19760 -11.65450 -11.45544 -11.21645 -10.94600 -10.58645 -10.56100 -9.94832 -9.87329 -8.68383 -8.21061 -6.31965 -0.25660 0.24945 0.85253 1.40481 1.41753 1.53138 1.60156 2.10687 2.41265 2.74540 3.05564 3.12229 3.52761 3.76999 3.98742 4.02877 4.04870 4.10668 4.23822 4.31350 4.35527 4.44288 4.57325 4.59620 4.65467 4.74016 4.79163 4.82186 4.84685 4.97313 5.04624 5.13425 5.17710 5.48938 5.50432 5.68563 5.82294 6.18166 6.22609 6.83450 6.99088 7.37011 8.90719 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.033501 B = 0.002508 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.590863 B =11163.771719 C =11478.054770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.326 6.326 3 C 0.165 3.835 4 C -0.254 4.254 5 C 0.152 3.848 6 C -0.102 4.102 7 N -0.523 5.523 8 C 0.171 3.829 9 C -0.032 4.032 10 S -0.276 6.276 11 C -0.067 4.067 12 C -0.081 4.081 13 C 0.031 3.969 14 C -0.545 4.545 15 H 0.058 0.942 16 C 0.001 3.999 17 N -0.931 5.931 18 Si 0.965 3.035 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.265 1.265 22 C -0.207 4.207 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.123 0.877 26 H 0.172 0.828 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.071 0.929 30 H 0.117 0.883 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.053 0.947 35 H 0.055 0.945 36 H -0.001 1.001 37 H -0.003 1.003 38 H 0.265 0.735 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.114 -3.304 -9.819 30.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.237 6.237 3 C 0.112 3.888 4 C -0.275 4.275 5 C 0.014 3.986 6 C -0.159 4.159 7 N -0.238 5.238 8 C 0.034 3.966 9 C -0.180 4.180 10 S -0.047 6.047 11 C -0.215 4.215 12 C -0.119 4.119 13 C -0.007 4.007 14 C -0.583 4.583 15 H 0.076 0.924 16 C -0.197 4.197 17 N -0.572 5.572 18 Si 0.790 3.210 19 H -0.197 1.197 20 H -0.205 1.205 21 H -0.189 1.189 22 C -0.230 4.230 23 H 0.087 0.913 24 H 0.091 0.909 25 H 0.141 0.859 26 H 0.189 0.811 27 H 0.112 0.888 28 H 0.118 0.882 29 H 0.090 0.910 30 H 0.135 0.865 31 H 0.121 0.879 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.017 0.983 37 H 0.015 0.985 38 H 0.073 0.927 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -29.054 -2.758 -8.950 30.526 hybrid contribution 1.064 -0.659 -0.436 1.325 sum -27.990 -3.417 -9.386 29.719 Atomic orbital electron populations 1.23490 0.75466 1.06175 1.02858 1.86070 1.24307 1.25759 1.87571 1.19363 0.92100 0.85502 0.91871 1.22303 1.02874 0.91550 1.10812 1.21647 0.89107 0.96544 0.91254 1.20831 0.99027 0.91708 1.04308 1.67337 1.07792 1.32200 1.16477 1.20141 0.94238 0.88173 0.94071 1.22166 0.92298 1.07435 0.96064 1.87091 1.07654 1.97690 1.12266 1.23400 0.91159 1.05075 1.01896 1.21168 0.95735 1.01174 0.93867 1.18978 0.90511 0.95359 0.95899 1.21662 0.92497 1.50464 0.93714 0.92394 1.25964 0.98223 0.94662 1.00879 1.70083 1.05926 1.51275 1.29878 0.85441 0.77826 0.78462 0.79301 1.19660 1.20544 1.18946 1.21331 0.93131 0.99412 1.09102 0.91257 0.90868 0.85925 0.81076 0.88782 0.88164 0.91042 0.86510 0.87902 0.89547 0.90028 0.92853 0.92589 0.98289 0.98460 0.92668 0.83452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.84 113.37 1.12 1.23 16 2 O -0.33 -5.85 10.51 -90.60 -0.95 -6.80 16 3 C 0.17 3.42 6.74 22.76 0.15 3.57 16 4 C -0.25 -4.33 8.74 22.45 0.20 -4.14 16 5 C 0.15 3.11 6.78 42.47 0.29 3.40 16 6 C -0.10 -1.32 10.17 71.24 0.72 -0.60 16 7 N -0.52 -13.94 10.19 -172.31 -1.76 -15.70 16 8 C 0.17 4.48 6.04 42.48 0.26 4.73 16 9 C -0.03 -0.82 6.22 71.23 0.44 -0.38 16 10 S -0.28 -9.00 21.72 -56.49 -1.23 -10.23 16 11 C -0.07 -2.38 5.94 71.98 0.43 -1.95 16 12 C -0.08 -3.49 5.16 30.60 0.16 -3.33 16 13 C 0.03 1.68 4.97 29.85 0.15 1.83 16 14 C -0.55 -31.75 9.11 25.60 0.23 -31.52 16 15 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 16 C 0.00 0.04 5.46 84.66 0.46 0.50 16 17 N -0.93 -57.07 13.29 21.45 0.28 -56.79 16 18 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 C -0.21 -4.93 9.70 22.45 0.22 -4.72 16 23 H 0.07 0.42 7.70 -2.39 -0.02 0.40 16 24 H 0.07 0.38 7.72 -2.39 -0.02 0.36 16 25 H 0.12 0.50 8.14 -2.38 -0.02 0.48 16 26 H 0.17 1.61 6.47 -2.91 -0.02 1.59 16 27 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.10 0.76 8.07 -2.39 -0.02 0.74 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.12 2.52 8.08 -2.39 -0.02 2.50 16 31 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 33 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 34 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.06 2.41 8.14 -2.39 -0.02 2.40 16 36 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 37 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 38 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 39 H 0.15 3.25 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -71.09 344.99 4.22 -66.87 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: 1.02 Total: 7.01 kcal Atomic # 6 Polarization: -36.19 SS G_CDS: 4.82 Total: -31.37 kcal Atomic # 7 Polarization: -71.01 SS G_CDS: -1.47 Total: -72.48 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -0.95 Total: -6.80 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 16 Polarization: -9.00 SS G_CDS: -1.23 Total: -10.23 kcal Total: -71.09 4.22 -66.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324958316.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.413 kcal (2) G-P(sol) polarization free energy of solvation -71.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds