Wall clock time and date at job start Tue Mar 31 2020 05:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.34747 * 126.44698 * 2 1 4 4 C 1.33967 * 107.76135 * 179.97438 * 3 2 1 5 5 N 1.30260 * 108.75886 * 0.02562 * 4 3 2 6 6 C 1.34330 * 126.44088 * 179.97438 * 2 1 3 7 7 C 1.50696 * 126.17007 * 0.02562 * 6 2 1 8 8 N 1.46501 * 109.46911 * 270.02664 * 7 6 2 9 9 C 1.34779 * 120.00323 * 179.97438 * 8 7 6 10 10 O 1.21354 * 119.99758 * 0.02562 * 9 8 7 11 11 C 1.49443 * 120.00207 * 179.97438 * 9 8 7 12 12 O 1.21345 * 120.00538 * 0.02562 * 11 9 8 13 13 N 1.34779 * 120.00207 * 179.97438 * 11 9 8 14 14 C 1.46492 * 120.00455 * 180.02562 * 13 11 9 15 15 C 1.53002 * 109.47425 * 180.02562 * 14 13 11 16 16 C 1.50699 * 109.47426 * 179.97438 * 15 14 13 17 17 H 1.08009 * 119.99848 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00328 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00158 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99686 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47195 * 89.99910 * 20 18 16 22 22 H 1.48503 * 109.46973 * 210.00079 * 20 18 16 23 23 H 1.48499 * 109.47268 * 329.99612 * 20 18 16 24 24 H 1.08999 * 109.46700 * 270.01320 * 1 2 3 25 25 H 1.08990 * 109.47109 * 30.01391 * 1 2 3 26 26 H 1.09001 * 109.47371 * 150.01905 * 1 2 3 27 27 H 1.07997 * 125.62305 * 180.02562 * 4 3 2 28 28 H 1.09001 * 109.47525 * 30.02021 * 7 6 2 29 29 H 1.08999 * 109.47609 * 150.02734 * 7 6 2 30 30 H 0.97000 * 119.99892 * 359.97438 * 8 7 6 31 31 H 0.97007 * 119.99403 * 359.97438 * 13 11 9 32 32 H 1.09000 * 109.47256 * 299.99841 * 14 13 11 33 33 H 1.08997 * 109.47587 * 59.99879 * 14 13 11 34 34 H 1.08995 * 109.46837 * 299.99638 * 15 14 13 35 35 H 1.08999 * 109.47250 * 60.00059 * 15 14 13 36 36 H 0.97005 * 120.00307 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3075 1.0839 0.0000 4 6 3.5766 0.6547 0.0006 5 7 3.5783 -0.6479 0.0004 6 6 2.3050 -1.0806 0.0005 7 6 1.8546 -2.5187 0.0006 8 7 1.7075 -2.9843 1.3819 9 6 1.3108 -4.2485 1.6284 10 8 1.0759 -5.0014 0.7061 11 6 1.1614 -4.7236 3.0374 12 8 1.3968 -3.9709 3.9597 13 7 0.7642 -5.9877 3.2839 14 6 0.6172 -6.4532 4.6650 15 6 0.1593 -7.9131 4.6653 16 6 0.0086 -8.3922 6.0861 17 1 0.2189 -7.7225 6.9070 18 6 -0.3976 -9.6854 6.3382 19 7 -0.5286 -10.1036 7.5782 20 14 -0.7605 -10.8439 4.9185 21 1 0.4791 -11.5703 4.5431 22 1 -1.8011 -11.8202 5.3299 23 1 -1.2482 -10.0621 3.7539 24 1 -0.3633 0.0002 1.0277 25 1 -0.3633 0.8898 -0.5140 26 1 -0.3634 -0.8901 -0.5135 27 1 4.4537 1.2848 0.0011 28 1 0.8970 -2.5997 -0.5139 29 1 2.5957 -3.1317 -0.5124 30 1 1.8957 -2.3826 2.1191 31 1 0.5750 -6.5890 2.5466 32 1 1.5749 -6.3732 5.1794 33 1 -0.1233 -5.8398 5.1784 34 1 -0.7983 -7.9936 4.1509 35 1 0.9001 -8.5263 4.1521 36 1 -0.8147 -11.0134 7.7556 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325034931.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:52 Heat of formation + Delta-G solvation = -52.832048 kcal Electronic energy + Delta-G solvation = -20736.366126 eV Core-core repulsion = 17222.460420 eV Total energy + Delta-G solvation = -3513.905706 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.84989 -40.48056 -38.42438 -36.26647 -35.27721 -34.40392 -32.94918 -32.73968 -30.29738 -28.87485 -26.68346 -25.48201 -23.29777 -22.64825 -21.30027 -20.89673 -20.30870 -18.59785 -17.40846 -17.26800 -17.01033 -16.51967 -16.11717 -15.45424 -15.40477 -14.93354 -14.62275 -14.22020 -14.17503 -13.63505 -13.60024 -13.39226 -13.28595 -12.76183 -12.62991 -12.61221 -11.80652 -11.58617 -11.49294 -11.24954 -10.97175 -10.44531 -10.31256 -9.96195 -9.56117 -9.47732 -9.35400 -9.14806 -8.77912 -8.61397 -6.12439 -4.13205 0.91205 1.52069 1.96751 2.26742 2.67401 3.26847 3.33839 3.34757 3.36539 3.63459 3.85837 4.20401 4.25661 4.37789 4.62413 4.65728 4.90954 4.98042 5.16475 5.20712 5.28268 5.46904 5.56861 5.76652 5.95523 5.96644 6.10242 6.46937 6.50725 6.91257 7.08476 7.18410 7.22895 7.53189 7.62426 7.82108 8.20076 8.41678 8.90822 9.47497 11.00317 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.042182 B = 0.002665 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.629359 B =10503.679129 C =10692.615517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.013 4.013 3 O -0.202 6.202 4 C 0.171 3.829 5 N -0.471 5.471 6 C -0.042 4.042 7 C 0.204 3.796 8 N -0.700 5.700 9 C 0.511 3.489 10 O -0.520 6.520 11 C 0.500 3.500 12 O -0.528 6.528 13 N -0.690 5.690 14 C 0.127 3.873 15 C -0.024 4.024 16 C -0.524 4.524 17 H 0.076 0.924 18 C 0.070 3.930 19 N -0.898 5.898 20 Si 0.881 3.119 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.265 1.265 24 H 0.091 0.909 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.253 0.747 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.414 0.586 31 H 0.409 0.591 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.025 0.975 35 H 0.020 0.980 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.799 22.088 -18.516 29.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.068 4.068 3 O -0.089 6.089 4 C -0.056 4.056 5 N -0.199 5.199 6 C -0.161 4.161 7 C 0.081 3.919 8 N -0.355 5.355 9 C 0.292 3.708 10 O -0.395 6.395 11 C 0.279 3.721 12 O -0.406 6.406 13 N -0.341 5.341 14 C 0.005 3.995 15 C -0.061 4.061 16 C -0.563 4.563 17 H 0.095 0.905 18 C -0.132 4.132 19 N -0.536 5.536 20 Si 0.708 3.292 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.189 1.189 24 H 0.110 0.890 25 H 0.101 0.899 26 H 0.114 0.886 27 H 0.268 0.732 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.250 0.750 31 H 0.245 0.755 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.043 0.957 35 H 0.039 0.961 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.272 21.556 -18.394 28.657 hybrid contribution -0.478 -0.176 -0.626 0.807 sum 3.795 21.380 -19.020 28.866 Atomic orbital electron populations 1.20422 0.83506 1.04772 1.04559 1.23380 0.95154 0.84107 1.04159 1.84471 1.18513 1.36312 1.69569 1.28077 0.85596 0.90998 1.00929 1.70365 1.22418 1.10386 1.16753 1.21301 0.88578 0.96485 1.09741 1.19463 1.01942 0.87111 0.83401 1.45746 1.67759 1.12979 1.09016 1.20424 0.77851 0.82290 0.90253 1.90762 1.48558 1.54372 1.45821 1.19899 0.79794 0.83762 0.88641 1.90752 1.49701 1.54731 1.45378 1.46201 1.64591 1.11598 1.11730 1.21718 1.01721 0.97427 0.78584 1.19825 0.96632 0.90441 0.99244 1.20878 1.46664 0.98169 0.90548 0.90544 1.24987 0.94624 0.97982 0.95609 1.69898 1.47053 1.17836 1.18782 0.86761 0.78475 0.80907 0.83039 1.20147 1.21244 1.18929 0.89038 0.89874 0.88593 0.73169 0.89172 0.89094 0.74981 0.75535 0.91251 0.91222 0.95698 0.96130 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 10.22 36.01 0.37 0.00 16 2 C -0.01 -0.10 7.39 -35.69 -0.26 -0.37 16 3 O -0.20 -1.57 10.77 5.38 0.06 -1.52 16 4 C 0.17 1.17 13.23 52.10 0.69 1.86 16 5 N -0.47 -4.73 11.30 -11.18 -0.13 -4.85 16 6 C -0.04 -0.39 6.47 -82.81 -0.54 -0.93 16 7 C 0.20 1.97 6.00 -5.19 -0.03 1.94 16 8 N -0.70 -8.00 5.54 -61.91 -0.34 -8.35 16 9 C 0.51 7.23 7.89 -11.59 -0.09 7.14 16 10 O -0.52 -8.15 16.48 5.49 0.09 -8.06 16 11 C 0.50 8.21 7.89 -11.59 -0.09 8.12 16 12 O -0.53 -9.76 16.48 5.50 0.09 -9.67 16 13 N -0.69 -11.76 5.55 -60.74 -0.34 -12.10 16 14 C 0.13 2.53 5.61 -4.05 -0.02 2.51 16 15 C -0.02 -0.54 4.16 -27.88 -0.12 -0.65 16 16 C -0.52 -14.52 9.66 -34.44 -0.33 -14.85 16 17 H 0.08 2.28 7.99 -52.48 -0.42 1.86 16 18 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 19 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 20 Si 0.88 21.09 27.47 -169.99 -4.67 16.42 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16 24 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.10 0.38 7.17 -51.93 -0.37 0.01 16 27 H 0.25 0.48 8.06 -52.49 -0.42 0.06 16 28 H 0.09 0.73 7.17 -51.93 -0.37 0.36 16 29 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.41 4.64 7.94 -40.82 -0.32 4.31 16 31 H 0.41 6.43 7.94 -40.82 -0.32 6.11 16 32 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.02 0.56 7.20 -51.93 -0.37 0.18 16 35 H 0.02 0.46 7.57 -51.93 -0.39 0.06 16 36 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 322.34 15.07 4.86 4.86 Total: -1.00 -34.25 322.34 -4.41 -38.67 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -4.28 Total: 4.33 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -0.53 Total: 6.66 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: -0.03 Total: -51.69 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: 0.24 Total: -19.24 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.25 -4.41 -38.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325034931.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.165 kcal (2) G-P(sol) polarization free energy of solvation -34.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds