Wall clock time and date at job start Tue Mar 31 2020 05:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.34747 * 126.44698 * 2 1 4 4 C 1.33967 * 107.76135 * 179.97438 * 3 2 1 5 5 N 1.30260 * 108.75886 * 0.02562 * 4 3 2 6 6 C 1.34330 * 126.44088 * 179.97438 * 2 1 3 7 7 C 1.50696 * 126.17007 * 0.02562 * 6 2 1 8 8 N 1.46501 * 109.46911 * 270.02664 * 7 6 2 9 9 C 1.34779 * 120.00323 * 179.97438 * 8 7 6 10 10 O 1.21354 * 119.99758 * 0.02562 * 9 8 7 11 11 C 1.49443 * 120.00207 * 179.97438 * 9 8 7 12 12 O 1.21345 * 120.00538 * 0.02562 * 11 9 8 13 13 N 1.34779 * 120.00207 * 179.97438 * 11 9 8 14 14 C 1.46492 * 120.00455 * 180.02562 * 13 11 9 15 15 C 1.53002 * 109.47425 * 180.02562 * 14 13 11 16 16 C 1.50699 * 109.47426 * 179.97438 * 15 14 13 17 17 H 1.08009 * 119.99848 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00328 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00158 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99686 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47195 * 89.99910 * 20 18 16 22 22 H 1.48503 * 109.46973 * 210.00079 * 20 18 16 23 23 H 1.48499 * 109.47268 * 329.99612 * 20 18 16 24 24 H 1.08999 * 109.46700 * 270.01320 * 1 2 3 25 25 H 1.08990 * 109.47109 * 30.01391 * 1 2 3 26 26 H 1.09001 * 109.47371 * 150.01905 * 1 2 3 27 27 H 1.07997 * 125.62305 * 180.02562 * 4 3 2 28 28 H 1.09001 * 109.47525 * 30.02021 * 7 6 2 29 29 H 1.08999 * 109.47609 * 150.02734 * 7 6 2 30 30 H 0.97000 * 119.99892 * 359.97438 * 8 7 6 31 31 H 0.97007 * 119.99403 * 359.97438 * 13 11 9 32 32 H 1.09000 * 109.47256 * 299.99841 * 14 13 11 33 33 H 1.08997 * 109.47587 * 59.99879 * 14 13 11 34 34 H 1.08995 * 109.46837 * 299.99638 * 15 14 13 35 35 H 1.08999 * 109.47250 * 60.00059 * 15 14 13 36 36 H 0.97005 * 120.00307 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3075 1.0839 0.0000 4 6 3.5766 0.6547 0.0006 5 7 3.5783 -0.6479 0.0004 6 6 2.3050 -1.0806 0.0005 7 6 1.8546 -2.5187 0.0006 8 7 1.7075 -2.9843 1.3819 9 6 1.3108 -4.2485 1.6284 10 8 1.0759 -5.0014 0.7061 11 6 1.1614 -4.7236 3.0374 12 8 1.3968 -3.9709 3.9597 13 7 0.7642 -5.9877 3.2839 14 6 0.6172 -6.4532 4.6650 15 6 0.1593 -7.9131 4.6653 16 6 0.0086 -8.3922 6.0861 17 1 0.2189 -7.7225 6.9070 18 6 -0.3976 -9.6854 6.3382 19 7 -0.5286 -10.1036 7.5782 20 14 -0.7605 -10.8439 4.9185 21 1 0.4791 -11.5703 4.5431 22 1 -1.8011 -11.8202 5.3299 23 1 -1.2482 -10.0621 3.7539 24 1 -0.3633 0.0002 1.0277 25 1 -0.3633 0.8898 -0.5140 26 1 -0.3634 -0.8901 -0.5135 27 1 4.4537 1.2848 0.0011 28 1 0.8970 -2.5997 -0.5139 29 1 2.5957 -3.1317 -0.5124 30 1 1.8957 -2.3826 2.1191 31 1 0.5750 -6.5890 2.5466 32 1 1.5749 -6.3732 5.1794 33 1 -0.1233 -5.8398 5.1784 34 1 -0.7983 -7.9936 4.1509 35 1 0.9001 -8.5263 4.1521 36 1 -0.8147 -11.0134 7.7556 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325034931.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:52 Heat of formation + Delta-G solvation = -82.606636 kcal Electronic energy + Delta-G solvation = -20737.657249 eV Core-core repulsion = 17222.460420 eV Total energy + Delta-G solvation = -3515.196829 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.42208 -41.71071 -39.69362 -37.22434 -36.66400 -35.27994 -34.75933 -33.46464 -32.12577 -29.63847 -27.69500 -26.79524 -24.62656 -23.28433 -22.65189 -21.94853 -21.51807 -19.78463 -19.01855 -18.11792 -17.98972 -17.61161 -17.24473 -16.57692 -16.30515 -16.20776 -16.12981 -15.69822 -15.12395 -14.92015 -14.64030 -14.55112 -14.05923 -13.90000 -13.58579 -13.38730 -13.17485 -13.06508 -12.91164 -12.38712 -12.22353 -12.19038 -11.77305 -11.57931 -11.50759 -10.80469 -10.78703 -10.44678 -10.24405 -9.78869 -8.29836 -6.36721 0.29070 0.33894 1.14755 1.40716 1.41986 1.53360 1.70315 1.79452 2.09370 2.37043 2.69917 3.05513 3.11099 3.40576 3.63560 3.72724 4.19108 4.26823 4.37512 4.39324 4.51073 4.63640 4.68220 4.72928 4.96192 4.98297 5.00170 5.14545 5.24464 5.29919 5.37855 5.59030 5.85590 6.20505 6.30480 6.64324 6.66262 6.71942 6.90201 7.27958 8.86480 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.042182 B = 0.002665 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.629359 B =10503.679129 C =10692.615517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.009 4.009 3 O -0.208 6.208 4 C 0.183 3.817 5 N -0.514 5.514 6 C -0.065 4.065 7 C 0.207 3.793 8 N -0.685 5.685 9 C 0.521 3.479 10 O -0.534 6.534 11 C 0.502 3.498 12 O -0.551 6.551 13 N -0.686 5.686 14 C 0.142 3.858 15 C -0.017 4.017 16 C -0.536 4.536 17 H 0.035 0.965 18 C 0.007 3.993 19 N -0.948 5.948 20 Si 0.954 3.046 21 H -0.267 1.267 22 H -0.286 1.286 23 H -0.239 1.239 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.105 0.895 27 H 0.293 0.707 28 H 0.109 0.891 29 H 0.081 0.919 30 H 0.416 0.584 31 H 0.418 0.582 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.037 0.963 35 H 0.034 0.966 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.580 22.955 -21.154 31.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.064 4.064 3 O -0.095 6.095 4 C -0.044 4.044 5 N -0.242 5.242 6 C -0.184 4.184 7 C 0.084 3.916 8 N -0.338 5.338 9 C 0.301 3.699 10 O -0.411 6.411 11 C 0.282 3.718 12 O -0.429 6.429 13 N -0.338 5.338 14 C 0.019 3.981 15 C -0.055 4.055 16 C -0.575 4.575 17 H 0.054 0.946 18 C -0.190 4.190 19 N -0.588 5.588 20 Si 0.776 3.224 21 H -0.192 1.192 22 H -0.212 1.212 23 H -0.162 1.162 24 H 0.114 0.886 25 H 0.116 0.884 26 H 0.124 0.876 27 H 0.308 0.692 28 H 0.127 0.873 29 H 0.100 0.900 30 H 0.252 0.748 31 H 0.256 0.744 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.063 22.460 -21.065 31.059 hybrid contribution -0.341 -0.287 0.260 0.516 sum 3.721 22.172 -20.805 30.632 Atomic orbital electron populations 1.20584 0.81620 1.06013 1.05175 1.23823 0.96216 0.83657 1.02716 1.84504 1.18964 1.36371 1.69617 1.29016 0.86265 0.90651 0.98455 1.70334 1.23070 1.12084 1.18689 1.21261 0.88942 0.96506 1.11644 1.19551 1.02668 0.87421 0.81953 1.45745 1.66048 1.11870 1.10156 1.19847 0.78392 0.83022 0.88656 1.90764 1.49796 1.54926 1.45609 1.20288 0.78727 0.83127 0.89634 1.90744 1.50452 1.55245 1.46460 1.45964 1.64936 1.12226 1.10663 1.21285 1.00752 0.95926 0.80162 1.19694 0.97648 0.91997 0.96149 1.21208 1.46172 0.97878 0.92205 0.94632 1.26004 0.94391 1.00037 0.98616 1.70058 1.48662 1.18584 1.21529 0.85614 0.78575 0.78398 0.79790 1.19183 1.21178 1.16229 0.88583 0.88403 0.87627 0.69200 0.87314 0.90034 0.74767 0.74440 0.92394 0.92107 0.94427 0.94769 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.22 71.24 0.73 0.15 16 2 C -0.01 -0.12 7.39 24.79 0.18 0.06 16 3 O -0.21 -2.83 10.77 -3.68 -0.04 -2.87 16 4 C 0.18 2.15 13.23 130.48 1.73 3.88 16 5 N -0.51 -9.69 11.30 -304.07 -3.43 -13.13 16 6 C -0.07 -1.14 6.47 41.26 0.27 -0.87 16 7 C 0.21 3.71 6.00 85.63 0.51 4.22 16 8 N -0.68 -14.77 5.54 -468.14 -2.59 -17.36 16 9 C 0.52 13.98 7.89 87.27 0.69 14.67 16 10 O -0.53 -15.78 16.48 -3.26 -0.05 -15.84 16 11 C 0.50 15.96 7.89 87.27 0.69 16.65 16 12 O -0.55 -20.06 16.48 -3.23 -0.05 -20.11 16 13 N -0.69 -22.48 5.55 -464.44 -2.58 -25.06 16 14 C 0.14 5.59 5.61 86.38 0.48 6.07 16 15 C -0.02 -0.76 4.16 29.85 0.12 -0.63 16 16 C -0.54 -30.15 9.66 25.60 0.25 -29.90 16 17 H 0.04 2.22 7.99 -2.91 -0.02 2.19 16 18 C 0.01 0.40 5.47 84.66 0.46 0.86 16 19 N -0.95 -58.71 13.96 21.45 0.30 -58.41 16 20 Si 0.95 42.62 27.47 68.60 1.88 44.51 16 21 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 22 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 23 H -0.24 -9.64 6.54 99.48 0.65 -8.99 16 24 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.11 0.59 7.17 -2.39 -0.02 0.57 16 27 H 0.29 0.27 8.06 -2.91 -0.02 0.25 16 28 H 0.11 1.54 7.17 -2.39 -0.02 1.52 16 29 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.42 8.88 7.94 -92.71 -0.74 8.14 16 31 H 0.42 12.27 7.94 -92.70 -0.74 11.54 16 32 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.04 1.58 7.20 -2.39 -0.02 1.56 16 35 H 0.03 1.43 7.57 -2.39 -0.02 1.41 16 36 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 Total: -1.00 -74.59 322.34 -0.84 -75.44 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -0.39 Total: 17.67 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: 6.12 Total: 15.16 kcal Atomic # 7 Polarization: -105.65 SS G_CDS: -8.31 Total: -113.96 kcal Atomic # 8 Polarization: -38.67 SS G_CDS: -0.15 Total: -38.81 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 1.88 Total: 44.51 kcal Total: -74.59 -0.84 -75.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325034931.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.168 kcal (2) G-P(sol) polarization free energy of solvation -74.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds