Wall clock time and date at job start Tue Mar 31 2020 05:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99807 * 2 1 4 4 H 1.48500 * 109.47181 * 269.99906 * 3 2 1 5 5 H 1.48504 * 109.47079 * 30.00053 * 3 2 1 6 6 H 1.48498 * 109.47065 * 149.99819 * 3 2 1 7 7 C 1.37879 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99382 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00005 * 0.02562 * 7 2 1 10 10 O 1.42890 * 110.64454 * 56.85839 * 9 7 2 11 11 C 1.55164 * 110.71840 * 180.02562 * 9 7 2 12 12 C 1.54907 * 101.58446 * 154.03848 * 11 9 7 13 13 N 1.47425 * 104.83213 * 322.99142 * 12 11 9 14 14 C 1.34781 * 125.65022 * 204.09122 * 13 12 11 15 15 O 1.21584 * 119.99970 * 180.02562 * 14 13 12 16 16 N 1.34771 * 119.99489 * 0.02562 * 14 13 12 17 17 C 1.46505 * 119.99622 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.47064 * 179.97438 * 17 16 14 19 19 C 1.41378 * 126.80377 * 94.99808 * 18 17 16 20 20 C 1.35450 * 103.98881 * 179.97438 * 19 18 17 21 21 O 1.34047 * 106.44418 * 0.02562 * 20 19 18 22 22 N 1.20927 * 111.56366 * 359.70533 * 21 20 19 23 23 C 1.47027 * 108.70176 * 24.35145 * 13 12 11 24 24 H 0.96999 * 120.00410 * 0.02562 * 1 2 3 25 25 H 0.96706 * 113.99769 * 303.13856 * 10 9 7 26 26 H 1.08998 * 111.00283 * 35.96322 * 11 9 7 27 27 H 1.09005 * 111.03320 * 272.13040 * 11 9 7 28 28 H 1.08998 * 110.37085 * 204.15111 * 12 11 9 29 29 H 1.09004 * 110.36725 * 81.82367 * 12 11 9 30 30 H 0.96996 * 120.00772 * 359.97438 * 16 14 13 31 31 H 1.09002 * 109.47068 * 299.99729 * 17 16 14 32 32 H 1.09001 * 109.47372 * 59.99816 * 17 16 14 33 33 H 1.08002 * 128.00513 * 0.03629 * 19 18 17 34 34 H 1.07993 * 126.78141 * 180.02562 * 20 19 18 35 35 H 1.09005 * 109.87847 * 118.13277 * 23 13 12 36 36 H 1.09000 * 109.88170 * 239.29271 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.3665 -2.5701 -1.1194 11 6 2.2335 -3.7002 0.0018 12 6 1.3738 -4.8045 0.6660 13 7 0.5895 -4.1025 1.6982 14 6 0.0637 -4.6661 2.8039 15 8 -0.5686 -3.9876 3.5901 16 7 0.2389 -5.9817 3.0379 17 6 -0.3331 -6.5944 4.2395 18 6 0.0037 -8.0631 4.2633 19 6 1.0925 -8.6717 4.9289 20 6 0.9539 -9.9892 4.6466 21 8 -0.1377 -10.0994 3.8765 22 7 -0.6533 -9.0234 3.6796 23 6 0.4705 -2.6871 1.3186 24 1 -0.4851 0.8400 -0.0004 25 1 -0.2681 -1.8420 -1.1661 26 1 3.1179 -3.4808 0.6000 27 1 2.5112 -3.9795 -1.0145 28 1 2.0133 -5.5594 1.1234 29 1 0.7108 -5.2621 -0.0683 30 1 0.7430 -6.5231 2.4106 31 1 0.0803 -6.1121 5.1252 32 1 -1.4160 -6.4705 4.2302 33 1 1.8572 -8.1962 5.5253 34 1 1.5960 -10.7922 4.9767 35 1 -0.5783 -2.4300 1.1704 36 1 0.9024 -2.0572 2.0962 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326014974.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:22 Heat of formation + Delta-G solvation = -7.216754 kcal Electronic energy + Delta-G solvation = -21888.767369 eV Core-core repulsion = 18376.839690 eV Total energy + Delta-G solvation = -3511.927679 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.25641 -39.70025 -37.52238 -35.59041 -34.29318 -33.24020 -32.15890 -31.92299 -30.08296 -28.03236 -27.10986 -24.78466 -23.42977 -22.63297 -21.39339 -19.76269 -19.52354 -18.28632 -17.82320 -17.45526 -17.07736 -15.94128 -15.46854 -15.19521 -14.93134 -14.49602 -14.05190 -13.94792 -13.47676 -12.96423 -12.95312 -12.83233 -12.66229 -12.11541 -11.64976 -11.59991 -11.42653 -11.05977 -10.84142 -10.67746 -10.61700 -10.48772 -10.16688 -9.98621 -9.65215 -9.34518 -8.95880 -8.66628 -8.31803 -7.79584 -6.29009 -4.37772 1.19166 1.79463 2.95723 3.17607 3.23108 3.29134 3.31658 3.66677 3.85618 4.25295 4.27297 4.44503 4.83948 4.98335 5.05296 5.11415 5.36692 5.49997 5.60393 5.68456 5.72398 5.80203 6.02072 6.08501 6.50052 6.58874 6.70982 6.86833 6.96369 7.23446 7.31530 7.57678 7.73953 7.95757 8.01408 8.46713 8.65590 9.05357 9.31242 9.44301 10.78838 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.037539 B = 0.003531 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.713128 B = 7928.122955 C = 8106.301158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.070 3.930 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.538 4.538 8 H 0.067 0.933 9 C 0.249 3.751 10 O -0.587 6.587 11 C -0.116 4.116 12 C 0.103 3.897 13 N -0.628 5.628 14 C 0.718 3.282 15 O -0.595 6.595 16 N -0.748 5.748 17 C 0.221 3.779 18 C -0.001 4.001 19 C -0.219 4.219 20 C -0.063 4.063 21 O 0.106 5.894 22 N -0.348 5.348 23 C 0.120 3.880 24 H 0.271 0.729 25 H 0.386 0.614 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.395 0.605 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.175 0.825 34 H 0.218 0.782 35 H 0.062 0.938 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.118 -17.195 7.444 19.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.576 4.576 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.397 6.397 11 C -0.154 4.154 12 C -0.020 4.020 13 N -0.364 5.364 14 C 0.420 3.580 15 O -0.474 6.474 16 N -0.407 5.407 17 C 0.096 3.904 18 C -0.160 4.160 19 C -0.241 4.241 20 C -0.144 4.144 21 O 0.036 5.964 22 N -0.049 5.049 23 C -0.002 4.002 24 H 0.081 0.919 25 H 0.238 0.762 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.229 0.771 31 H 0.107 0.893 32 H 0.100 0.900 33 H 0.192 0.808 34 H 0.235 0.765 35 H 0.081 0.919 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.662 -17.128 7.219 18.777 hybrid contribution 1.093 1.277 0.468 1.744 sum 3.754 -15.851 7.687 18.012 Atomic orbital electron populations 1.69578 1.06026 1.28018 1.49811 1.25085 0.95057 0.99820 0.93334 0.86378 0.79772 0.82353 0.78260 1.20383 1.20971 1.19704 1.21517 0.93700 0.90092 1.52278 0.91476 1.19486 0.85876 0.92041 0.81784 1.86069 1.51440 1.53455 1.48724 1.22733 0.97635 0.94855 1.00180 1.22249 0.93825 0.95602 0.90360 1.47931 1.55147 1.12356 1.21006 1.15421 0.80054 0.80967 0.81558 1.90895 1.46584 1.61946 1.47968 1.45028 1.60783 1.08540 1.26332 1.19200 0.99733 0.82562 0.88896 1.23718 0.94943 0.97666 0.99668 1.22822 1.01756 0.93588 1.05941 1.26066 0.92078 0.99460 0.96790 1.84877 1.32743 1.26852 1.51920 1.73941 1.19917 0.91545 1.19479 1.22931 1.01495 0.76561 0.99193 0.91866 0.76156 0.90542 0.90527 0.92719 0.91949 0.77137 0.89331 0.89987 0.80770 0.76526 0.91949 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.91 10.97 55.43 0.61 -23.30 16 2 C 0.07 1.83 5.28 -17.82 -0.09 1.73 16 3 Si 0.91 20.41 29.54 -169.99 -5.02 15.38 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 7 C -0.54 -14.02 8.12 -34.44 -0.28 -14.30 16 8 H 0.07 1.71 7.76 -52.49 -0.41 1.30 16 9 C 0.25 6.03 0.86 -89.93 -0.08 5.96 16 10 O -0.59 -14.94 13.07 -35.23 -0.46 -15.40 16 11 C -0.12 -2.30 6.23 -24.58 -0.15 -2.45 16 12 C 0.10 1.82 6.56 -2.53 -0.02 1.80 16 13 N -0.63 -13.15 3.33 -176.23 -0.59 -13.74 16 14 C 0.72 14.69 8.49 -86.92 -0.74 13.95 16 15 O -0.60 -14.35 16.67 5.29 0.09 -14.26 16 16 N -0.75 -11.61 5.51 -66.41 -0.37 -11.97 16 17 C 0.22 2.95 6.26 -5.19 -0.03 2.92 16 18 C 0.00 -0.01 6.70 -82.10 -0.55 -0.56 16 19 C -0.22 -1.76 11.12 -39.38 -0.44 -2.20 16 20 C -0.06 -0.40 12.30 29.74 0.37 -0.03 16 21 O 0.11 1.03 11.20 17.16 0.19 1.23 16 22 N -0.35 -4.30 12.07 33.42 0.40 -3.90 16 23 C 0.12 2.95 5.54 -3.06 -0.02 2.93 16 24 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 25 H 0.39 10.16 6.98 45.56 0.32 10.48 16 26 H 0.08 1.45 8.03 -51.93 -0.42 1.03 16 27 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 28 H 0.05 0.78 7.30 -51.93 -0.38 0.40 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.39 5.41 6.94 -40.82 -0.28 5.13 16 31 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.17 1.02 8.06 -52.49 -0.42 0.59 16 34 H 0.22 0.35 8.06 -52.49 -0.42 -0.07 16 35 H 0.06 1.68 8.07 -51.93 -0.42 1.26 16 36 H 0.06 1.70 7.82 -51.93 -0.41 1.30 16 LS Contribution 311.02 15.07 4.69 4.69 Total: -1.00 -31.71 311.02 -6.15 -37.86 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -3.66 Total: 13.65 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: -2.03 Total: 9.76 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.06 Total: -52.91 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -0.18 Total: -28.43 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.71 -6.15 -37.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326014974.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.643 kcal (2) G-P(sol) polarization free energy of solvation -31.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds