Wall clock time and date at job start Tue Mar 31 2020 05:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99807 * 2 1 4 4 H 1.48500 * 109.47181 * 269.99906 * 3 2 1 5 5 H 1.48504 * 109.47079 * 30.00053 * 3 2 1 6 6 H 1.48498 * 109.47065 * 149.99819 * 3 2 1 7 7 C 1.37879 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99382 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00005 * 0.02562 * 7 2 1 10 10 O 1.42890 * 110.64454 * 56.85839 * 9 7 2 11 11 C 1.55164 * 110.71840 * 180.02562 * 9 7 2 12 12 C 1.54907 * 101.58446 * 154.03848 * 11 9 7 13 13 N 1.47425 * 104.83213 * 322.99142 * 12 11 9 14 14 C 1.34781 * 125.65022 * 204.09122 * 13 12 11 15 15 O 1.21584 * 119.99970 * 180.02562 * 14 13 12 16 16 N 1.34771 * 119.99489 * 0.02562 * 14 13 12 17 17 C 1.46505 * 119.99622 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.47064 * 179.97438 * 17 16 14 19 19 C 1.41378 * 126.80377 * 94.99808 * 18 17 16 20 20 C 1.35450 * 103.98881 * 179.97438 * 19 18 17 21 21 O 1.34047 * 106.44418 * 0.02562 * 20 19 18 22 22 N 1.20927 * 111.56366 * 359.70533 * 21 20 19 23 23 C 1.47027 * 108.70176 * 24.35145 * 13 12 11 24 24 H 0.96999 * 120.00410 * 0.02562 * 1 2 3 25 25 H 0.96706 * 113.99769 * 303.13856 * 10 9 7 26 26 H 1.08998 * 111.00283 * 35.96322 * 11 9 7 27 27 H 1.09005 * 111.03320 * 272.13040 * 11 9 7 28 28 H 1.08998 * 110.37085 * 204.15111 * 12 11 9 29 29 H 1.09004 * 110.36725 * 81.82367 * 12 11 9 30 30 H 0.96996 * 120.00772 * 359.97438 * 16 14 13 31 31 H 1.09002 * 109.47068 * 299.99729 * 17 16 14 32 32 H 1.09001 * 109.47372 * 59.99816 * 17 16 14 33 33 H 1.08002 * 128.00513 * 0.03629 * 19 18 17 34 34 H 1.07993 * 126.78141 * 180.02562 * 20 19 18 35 35 H 1.09005 * 109.87847 * 118.13277 * 23 13 12 36 36 H 1.09000 * 109.88170 * 239.29271 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.3665 -2.5701 -1.1194 11 6 2.2335 -3.7002 0.0018 12 6 1.3738 -4.8045 0.6660 13 7 0.5895 -4.1025 1.6982 14 6 0.0637 -4.6661 2.8039 15 8 -0.5686 -3.9876 3.5901 16 7 0.2389 -5.9817 3.0379 17 6 -0.3331 -6.5944 4.2395 18 6 0.0037 -8.0631 4.2633 19 6 1.0925 -8.6717 4.9289 20 6 0.9539 -9.9892 4.6466 21 8 -0.1377 -10.0994 3.8765 22 7 -0.6533 -9.0234 3.6796 23 6 0.4705 -2.6871 1.3186 24 1 -0.4851 0.8400 -0.0004 25 1 -0.2681 -1.8420 -1.1661 26 1 3.1179 -3.4808 0.6000 27 1 2.5112 -3.9795 -1.0145 28 1 2.0133 -5.5594 1.1234 29 1 0.7108 -5.2621 -0.0683 30 1 0.7430 -6.5231 2.4106 31 1 0.0803 -6.1121 5.1252 32 1 -1.4160 -6.4705 4.2302 33 1 1.8572 -8.1962 5.5253 34 1 1.5960 -10.7922 4.9767 35 1 -0.5783 -2.4300 1.1704 36 1 0.9024 -2.0572 2.0962 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326014974.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:22 Heat of formation + Delta-G solvation = -32.226165 kcal Electronic energy + Delta-G solvation = -21889.851858 eV Core-core repulsion = 18376.839690 eV Total energy + Delta-G solvation = -3513.012168 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.00117 -41.33144 -39.24622 -36.75853 -36.13272 -34.32122 -34.17234 -32.64648 -31.74486 -29.72657 -28.49223 -26.59616 -24.29581 -24.07669 -22.20334 -21.46335 -21.15792 -19.47293 -19.07218 -18.64273 -18.47580 -17.49229 -16.97830 -16.86401 -16.25132 -16.04328 -15.51216 -15.15612 -14.79737 -14.69740 -14.48835 -14.01104 -13.99122 -13.50383 -13.44584 -13.30435 -12.85494 -12.57340 -12.38738 -12.31603 -12.28256 -12.11326 -11.61415 -11.23207 -11.17011 -10.64129 -10.59968 -10.39748 -10.30881 -9.48104 -8.27120 -6.43403 0.52421 1.04226 1.42364 1.44169 1.54031 1.77643 2.04430 2.38006 2.44633 2.98413 2.99401 3.07032 3.56120 3.78391 4.04430 4.12883 4.18848 4.32396 4.36901 4.45169 4.55043 4.58823 4.69465 4.83090 5.01231 5.10775 5.11917 5.19404 5.26355 5.35205 5.46682 5.75006 5.96370 6.08486 6.63494 6.94195 7.28648 7.29200 7.37631 7.44309 8.79245 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.037539 B = 0.003531 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.713128 B = 7928.122955 C = 8106.301158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.024 3.976 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.557 4.557 8 H 0.070 0.930 9 C 0.233 3.767 10 O -0.591 6.591 11 C -0.109 4.109 12 C 0.107 3.893 13 N -0.633 5.633 14 C 0.714 3.286 15 O -0.639 6.639 16 N -0.726 5.726 17 C 0.222 3.778 18 C -0.019 4.019 19 C -0.226 4.226 20 C -0.037 4.037 21 O 0.104 5.896 22 N -0.385 5.385 23 C 0.138 3.862 24 H 0.271 0.729 25 H 0.378 0.622 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.066 0.934 30 H 0.407 0.593 31 H 0.097 0.903 32 H 0.063 0.937 33 H 0.197 0.803 34 H 0.269 0.731 35 H 0.025 0.975 36 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.417 -19.416 7.889 21.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.177 4.177 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.595 4.595 8 H 0.089 0.911 9 C 0.192 3.808 10 O -0.400 6.400 11 C -0.147 4.147 12 C -0.015 4.015 13 N -0.370 5.370 14 C 0.416 3.584 15 O -0.521 6.521 16 N -0.384 5.384 17 C 0.098 3.902 18 C -0.176 4.176 19 C -0.248 4.248 20 C -0.118 4.118 21 O 0.033 5.967 22 N -0.086 5.086 23 C 0.014 3.986 24 H 0.081 0.919 25 H 0.229 0.771 26 H 0.105 0.895 27 H 0.109 0.891 28 H 0.119 0.881 29 H 0.085 0.915 30 H 0.243 0.757 31 H 0.115 0.885 32 H 0.081 0.919 33 H 0.214 0.786 34 H 0.284 0.716 35 H 0.043 0.957 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.986 -19.415 7.650 21.455 hybrid contribution 0.374 1.865 0.377 1.939 sum 5.360 -17.550 8.027 20.029 Atomic orbital electron populations 1.69689 1.07225 1.28595 1.50316 1.25859 0.95805 1.02985 0.93023 0.85421 0.78632 0.78432 0.78358 1.19755 1.21179 1.19024 1.21861 0.94069 0.91238 1.52344 0.91147 1.19727 0.86367 0.93691 0.80974 1.86060 1.51500 1.53050 1.49364 1.22729 0.97099 0.93307 1.01584 1.22400 0.93769 0.95524 0.89781 1.47867 1.55859 1.11284 1.21940 1.15602 0.79623 0.82215 0.80937 1.90858 1.48422 1.63442 1.49402 1.44834 1.59876 1.06630 1.27073 1.19196 0.98595 0.84369 0.88077 1.23550 0.96581 0.96294 1.01216 1.23108 1.01349 0.94138 1.06156 1.26977 0.90467 1.00211 0.94121 1.84834 1.33761 1.25810 1.52281 1.73951 1.21320 0.92399 1.20970 1.22441 0.98888 0.78508 0.98749 0.91947 0.77092 0.89496 0.89089 0.88139 0.91525 0.75682 0.88528 0.91868 0.78591 0.71586 0.95655 0.94735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.50 10.97 21.45 0.24 -50.27 16 2 C 0.02 1.25 5.28 84.65 0.45 1.70 16 3 Si 0.97 42.05 29.54 68.60 2.03 44.07 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 5 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.56 -29.22 8.12 25.60 0.21 -29.01 16 8 H 0.07 3.55 7.76 -2.91 -0.02 3.53 16 9 C 0.23 11.39 0.86 -10.35 -0.01 11.38 16 10 O -0.59 -30.55 13.07 -148.98 -1.95 -32.50 16 11 C -0.11 -4.14 6.23 31.99 0.20 -3.94 16 12 C 0.11 3.56 6.56 86.85 0.57 4.13 16 13 N -0.63 -26.51 3.33 -829.73 -2.76 -29.27 16 14 C 0.71 29.38 8.49 179.05 1.52 30.90 16 15 O -0.64 -31.82 16.67 -3.98 -0.07 -31.89 16 16 N -0.73 -21.81 5.51 -482.29 -2.66 -24.47 16 17 C 0.22 5.84 6.26 85.63 0.54 6.38 16 18 C -0.02 -0.40 6.70 43.58 0.29 -0.11 16 19 C -0.23 -2.88 11.12 22.40 0.25 -2.63 16 20 C -0.04 -0.32 12.30 67.18 0.83 0.51 16 21 O 0.10 1.76 11.20 71.57 0.80 2.56 16 22 N -0.38 -9.02 12.07 -49.55 -0.60 -9.61 16 23 C 0.14 7.01 5.54 86.73 0.48 7.49 16 24 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 25 H 0.38 20.62 6.98 -74.05 -0.52 20.10 16 26 H 0.09 3.09 8.03 -2.39 -0.02 3.07 16 27 H 0.09 3.18 8.14 -2.38 -0.02 3.16 16 28 H 0.10 2.45 7.30 -2.39 -0.02 2.43 16 29 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 30 H 0.41 10.24 6.94 -92.71 -0.64 9.59 16 31 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.20 1.53 8.06 -2.91 -0.02 1.51 16 34 H 0.27 -0.73 8.06 -2.91 -0.02 -0.75 16 35 H 0.02 1.43 8.07 -2.38 -0.02 1.42 16 36 H 0.03 1.91 7.82 -2.39 -0.02 1.89 16 Total: -1.00 -72.09 311.02 0.32 -71.76 By element: Atomic # 1 Polarization: 32.85 SS G_CDS: -0.03 Total: 32.82 kcal Atomic # 6 Polarization: 21.46 SS G_CDS: 5.32 Total: 26.78 kcal Atomic # 7 Polarization: -107.84 SS G_CDS: -5.78 Total: -113.62 kcal Atomic # 8 Polarization: -60.61 SS G_CDS: -1.21 Total: -61.82 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Total: -72.09 0.32 -71.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326014974.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.538 kcal (2) G-P(sol) polarization free energy of solvation -72.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds