Wall clock time and date at job start Tue Mar 31 2020 05:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00041 * 2 1 4 4 H 1.48496 * 109.47263 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47013 * 300.00412 * 3 2 1 6 6 H 1.48501 * 109.47389 * 60.00092 * 3 2 1 7 7 C 1.37879 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99896 * 359.97438 * 7 2 1 10 10 O 1.42898 * 110.64351 * 298.31228 * 9 7 2 11 11 C 1.55159 * 110.87327 * 175.06760 * 9 7 2 12 12 C 1.55132 * 101.48684 * 205.89810 * 11 9 7 13 13 N 1.47422 * 104.72087 * 37.29365 * 12 11 9 14 14 C 1.34777 * 125.64727 * 155.82223 * 13 12 11 15 15 O 1.21593 * 119.99953 * 179.68840 * 14 13 12 16 16 N 1.34773 * 120.00097 * 359.95968 * 14 13 12 17 17 C 1.46500 * 120.00431 * 179.72742 * 16 14 13 18 18 C 1.50698 * 109.47467 * 180.02562 * 17 16 14 19 19 C 1.41381 * 126.80275 * 95.00093 * 18 17 16 20 20 C 1.35450 * 103.98402 * 180.02562 * 19 18 17 21 21 O 1.34041 * 106.44771 * 0.02562 * 20 19 18 22 22 N 1.20929 * 111.56644 * 359.70593 * 21 20 19 23 23 C 1.47020 * 108.70730 * 335.54988 * 13 12 11 24 24 H 0.97000 * 120.00162 * 359.97438 * 1 2 3 25 25 H 0.96699 * 114.00148 * 61.68443 * 10 9 7 26 26 H 1.09005 * 111.00089 * 324.13684 * 11 9 7 27 27 H 1.09000 * 111.00555 * 87.98657 * 11 9 7 28 28 H 1.09001 * 110.49739 * 278.45195 * 12 11 9 29 29 H 1.09000 * 110.34355 * 156.05515 * 12 11 9 30 30 H 0.97000 * 120.00112 * 359.73180 * 16 14 13 31 31 H 1.09009 * 109.46712 * 300.00517 * 17 16 14 32 32 H 1.08998 * 109.47207 * 59.99494 * 17 16 14 33 33 H 1.07998 * 128.00549 * 359.96539 * 19 18 17 34 34 H 1.08007 * 126.77333 * 180.02562 * 20 19 18 35 35 H 1.08999 * 109.88065 * 120.70222 * 23 13 12 36 36 H 1.08999 * 109.89017 * 241.71947 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.4504 -2.6185 1.1770 11 6 2.2255 -3.7000 -0.1258 12 6 1.3104 -4.7744 -0.7702 13 7 0.4607 -4.0256 -1.7139 14 6 -0.1466 -4.5394 -2.8018 15 8 -0.8317 -3.8264 -3.5094 16 7 0.0011 -5.8449 -3.1025 17 6 -0.6638 -6.4049 -4.2817 18 6 -0.3402 -7.8726 -4.3914 19 6 -1.1178 -8.9498 -3.9078 20 6 -0.4041 -10.0487 -4.2511 21 8 0.6934 -9.6069 -4.8812 22 7 0.7086 -8.3999 -4.9539 23 6 0.3801 -2.6269 -1.2682 24 1 -0.4850 0.8400 0.0004 25 1 -0.2277 -1.9344 1.2627 26 1 3.0650 -3.4557 -0.7767 27 1 2.5746 -4.0238 0.8547 28 1 0.6975 -5.2592 -0.0103 29 1 1.9099 -5.5125 -1.3030 30 1 0.5477 -6.4138 -2.5381 31 1 -1.7421 -6.2770 -4.1857 32 1 -0.3148 -5.8877 -5.1755 33 1 -2.0616 -8.9064 -3.3847 34 1 -0.6675 -11.0777 -4.0558 35 1 0.7610 -1.9669 -2.0476 36 1 -0.6538 -2.3701 -1.0378 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326014981.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:25 Heat of formation + Delta-G solvation = -7.092019 kcal Electronic energy + Delta-G solvation = -21903.048435 eV Core-core repulsion = 18391.126165 eV Total energy + Delta-G solvation = -3511.922270 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.25471 -39.69527 -37.52559 -35.58604 -34.27271 -33.23344 -32.21927 -31.92111 -30.06987 -28.00057 -27.09913 -24.77370 -23.42805 -22.63941 -21.38997 -19.76573 -19.53477 -18.28428 -17.82232 -17.43961 -17.04228 -15.90908 -15.54904 -15.12943 -14.98067 -14.37928 -14.12043 -13.95316 -13.48628 -13.05615 -12.90368 -12.81976 -12.61260 -12.11682 -11.68284 -11.60717 -11.39527 -11.05311 -10.83451 -10.67930 -10.62403 -10.45682 -10.16943 -9.98365 -9.64100 -9.31750 -8.95351 -8.67687 -8.31396 -7.78791 -6.27421 -4.35844 1.19231 1.79691 2.95820 3.18268 3.23302 3.30539 3.34017 3.67524 3.85404 4.26301 4.28168 4.45111 4.84233 5.00349 5.05663 5.11690 5.36383 5.50246 5.60295 5.69281 5.72526 5.77972 5.99784 6.08443 6.50124 6.59332 6.71075 6.88782 6.96545 7.24550 7.31710 7.59511 7.74249 7.95718 8.04286 8.47353 8.68080 9.06120 9.30032 9.38850 10.80483 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.036902 B = 0.003558 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.592231 B = 7867.847053 C = 8051.443626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.070 3.930 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.537 4.537 8 H 0.067 0.933 9 C 0.248 3.752 10 O -0.585 6.585 11 C -0.116 4.116 12 C 0.103 3.897 13 N -0.628 5.628 14 C 0.718 3.282 15 O -0.595 6.595 16 N -0.748 5.748 17 C 0.221 3.779 18 C -0.001 4.001 19 C -0.219 4.219 20 C -0.063 4.063 21 O 0.106 5.894 22 N -0.348 5.348 23 C 0.123 3.877 24 H 0.269 0.731 25 H 0.382 0.618 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.395 0.605 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.175 0.825 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.448 -18.311 -4.873 19.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.575 4.575 8 H 0.085 0.915 9 C 0.207 3.793 10 O -0.394 6.394 11 C -0.154 4.154 12 C -0.021 4.021 13 N -0.365 5.365 14 C 0.420 3.580 15 O -0.474 6.474 16 N -0.407 5.407 17 C 0.096 3.904 18 C -0.160 4.160 19 C -0.241 4.241 20 C -0.144 4.144 21 O 0.036 5.964 22 N -0.049 5.049 23 C 0.001 3.999 24 H 0.079 0.921 25 H 0.232 0.768 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.228 0.772 31 H 0.107 0.893 32 H 0.100 0.900 33 H 0.192 0.808 34 H 0.235 0.765 35 H 0.083 0.917 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.704 -17.643 -6.002 18.650 hybrid contribution -0.580 0.846 0.571 1.174 sum -1.284 -16.798 -5.431 17.701 Atomic orbital electron populations 1.69704 1.05983 1.27818 1.49692 1.25075 0.95058 0.99784 0.93383 0.86347 0.80059 0.82749 0.77744 1.19601 1.20763 1.20753 1.21526 0.93702 0.90057 1.52248 0.91487 1.19515 0.86551 0.92018 0.81189 1.86102 1.51825 1.56609 1.44835 1.22763 0.97362 0.95067 1.00170 1.22293 0.92792 0.95131 0.91856 1.47961 1.50788 1.13044 1.24744 1.15423 0.80444 0.81115 0.81035 1.90899 1.44799 1.59263 1.52391 1.45031 1.56122 1.09342 1.30204 1.19197 0.98197 0.83520 0.89479 1.23719 0.92696 0.98789 1.00766 1.22826 1.03907 0.90839 1.06522 1.26066 0.87828 1.01752 0.98741 1.84874 1.37825 1.16449 1.57261 1.73941 1.21363 0.90693 1.18933 1.22888 1.01531 0.77080 0.98394 0.92051 0.76754 0.90435 0.90578 0.91922 0.92722 0.77152 0.89341 0.89984 0.80766 0.76519 0.91700 0.91783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.87 10.96 55.43 0.61 -23.26 16 2 C 0.07 1.84 5.28 -17.82 -0.09 1.75 16 3 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 7 C -0.54 -14.08 8.13 -34.44 -0.28 -14.36 16 8 H 0.07 1.73 7.78 -52.49 -0.41 1.33 16 9 C 0.25 5.99 0.85 -89.94 -0.08 5.91 16 10 O -0.58 -14.59 13.07 -35.23 -0.46 -15.05 16 11 C -0.12 -2.30 6.24 -24.46 -0.15 -2.45 16 12 C 0.10 1.81 6.58 -2.41 -0.02 1.79 16 13 N -0.63 -13.16 3.32 -176.10 -0.59 -13.75 16 14 C 0.72 14.71 8.49 -86.92 -0.74 13.97 16 15 O -0.59 -14.39 16.67 5.28 0.09 -14.30 16 16 N -0.75 -11.62 5.51 -66.41 -0.37 -11.99 16 17 C 0.22 2.96 6.26 -5.19 -0.03 2.93 16 18 C 0.00 -0.01 6.70 -82.10 -0.55 -0.56 16 19 C -0.22 -1.77 11.12 -39.38 -0.44 -2.21 16 20 C -0.06 -0.40 12.30 29.74 0.37 -0.03 16 21 O 0.11 1.03 11.20 17.17 0.19 1.22 16 22 N -0.35 -4.29 12.07 33.42 0.40 -3.89 16 23 C 0.12 3.01 5.23 -3.06 -0.02 3.00 16 24 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 25 H 0.38 9.77 7.45 45.56 0.34 10.11 16 26 H 0.08 1.50 8.05 -51.93 -0.42 1.08 16 27 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.05 0.80 7.29 -51.93 -0.38 0.42 16 30 H 0.39 5.41 6.94 -40.82 -0.28 5.13 16 31 H 0.09 1.12 8.14 -51.92 -0.42 0.70 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.22 0.36 8.06 -52.48 -0.42 -0.06 16 35 H 0.06 1.75 7.81 -51.93 -0.41 1.34 16 36 H 0.06 1.71 7.92 -51.93 -0.41 1.30 16 LS Contribution 311.08 15.07 4.69 4.69 Total: -1.00 -31.74 311.08 -6.12 -37.86 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -3.64 Total: 13.20 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: -2.03 Total: 9.73 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: 0.06 Total: -52.89 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.18 Total: -28.13 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.74 -6.12 -37.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326014981.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.768 kcal (2) G-P(sol) polarization free energy of solvation -31.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds