Wall clock time and date at job start Tue Mar 31 2020 05:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00041 * 2 1 4 4 H 1.48496 * 109.47263 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47013 * 300.00412 * 3 2 1 6 6 H 1.48501 * 109.47389 * 60.00092 * 3 2 1 7 7 C 1.37879 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99896 * 359.97438 * 7 2 1 10 10 O 1.42898 * 110.64351 * 298.31228 * 9 7 2 11 11 C 1.55159 * 110.87327 * 175.06760 * 9 7 2 12 12 C 1.55132 * 101.48684 * 205.89810 * 11 9 7 13 13 N 1.47422 * 104.72087 * 37.29365 * 12 11 9 14 14 C 1.34777 * 125.64727 * 155.82223 * 13 12 11 15 15 O 1.21593 * 119.99953 * 179.68840 * 14 13 12 16 16 N 1.34773 * 120.00097 * 359.95968 * 14 13 12 17 17 C 1.46500 * 120.00431 * 179.72742 * 16 14 13 18 18 C 1.50698 * 109.47467 * 180.02562 * 17 16 14 19 19 C 1.41381 * 126.80275 * 95.00093 * 18 17 16 20 20 C 1.35450 * 103.98402 * 180.02562 * 19 18 17 21 21 O 1.34041 * 106.44771 * 0.02562 * 20 19 18 22 22 N 1.20929 * 111.56644 * 359.70593 * 21 20 19 23 23 C 1.47020 * 108.70730 * 335.54988 * 13 12 11 24 24 H 0.97000 * 120.00162 * 359.97438 * 1 2 3 25 25 H 0.96699 * 114.00148 * 61.68443 * 10 9 7 26 26 H 1.09005 * 111.00089 * 324.13684 * 11 9 7 27 27 H 1.09000 * 111.00555 * 87.98657 * 11 9 7 28 28 H 1.09001 * 110.49739 * 278.45195 * 12 11 9 29 29 H 1.09000 * 110.34355 * 156.05515 * 12 11 9 30 30 H 0.97000 * 120.00112 * 359.73180 * 16 14 13 31 31 H 1.09009 * 109.46712 * 300.00517 * 17 16 14 32 32 H 1.08998 * 109.47207 * 59.99494 * 17 16 14 33 33 H 1.07998 * 128.00549 * 359.96539 * 19 18 17 34 34 H 1.08007 * 126.77333 * 180.02562 * 20 19 18 35 35 H 1.08999 * 109.88065 * 120.70222 * 23 13 12 36 36 H 1.08999 * 109.89017 * 241.71947 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.4504 -2.6185 1.1770 11 6 2.2255 -3.7000 -0.1258 12 6 1.3104 -4.7744 -0.7702 13 7 0.4607 -4.0256 -1.7139 14 6 -0.1466 -4.5394 -2.8018 15 8 -0.8317 -3.8264 -3.5094 16 7 0.0011 -5.8449 -3.1025 17 6 -0.6638 -6.4049 -4.2817 18 6 -0.3402 -7.8726 -4.3914 19 6 -1.1178 -8.9498 -3.9078 20 6 -0.4041 -10.0487 -4.2511 21 8 0.6934 -9.6069 -4.8812 22 7 0.7086 -8.3999 -4.9539 23 6 0.3801 -2.6269 -1.2682 24 1 -0.4850 0.8400 0.0004 25 1 -0.2277 -1.9344 1.2627 26 1 3.0650 -3.4557 -0.7767 27 1 2.5746 -4.0238 0.8547 28 1 0.6975 -5.2592 -0.0103 29 1 1.9099 -5.5125 -1.3030 30 1 0.5477 -6.4138 -2.5381 31 1 -1.7421 -6.2770 -4.1857 32 1 -0.3148 -5.8877 -5.1755 33 1 -2.0616 -8.9064 -3.3847 34 1 -0.6675 -11.0777 -4.0558 35 1 0.7610 -1.9669 -2.0476 36 1 -0.6538 -2.3701 -1.0378 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326014981.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:24 Heat of formation + Delta-G solvation = -32.153127 kcal Electronic energy + Delta-G solvation = -21904.135166 eV Core-core repulsion = 18391.126165 eV Total energy + Delta-G solvation = -3513.009001 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.00076 -41.32823 -39.24747 -36.75527 -36.10171 -34.31653 -34.23466 -32.64697 -31.73197 -29.69126 -28.48978 -26.59227 -24.30520 -24.07898 -22.20237 -21.47888 -21.15776 -19.46678 -19.02256 -18.64503 -18.48115 -17.49788 -16.99615 -16.81763 -16.35403 -15.96324 -15.49049 -15.19984 -14.79176 -14.68316 -14.51479 -14.15645 -13.69551 -13.64330 -13.49889 -13.26135 -12.87331 -12.56188 -12.40289 -12.34900 -12.25722 -12.10821 -11.60989 -11.20665 -11.16876 -10.66685 -10.60045 -10.39296 -10.29576 -9.47350 -8.26915 -6.42590 0.52179 1.04024 1.39985 1.43358 1.53978 1.78219 2.04665 2.37688 2.44239 2.98572 2.99990 3.06867 3.56149 3.77037 4.01507 4.12892 4.18111 4.33734 4.36198 4.45180 4.54507 4.58655 4.69976 4.82838 5.03427 5.10511 5.11394 5.19482 5.26492 5.34380 5.47877 5.73901 5.97789 6.10186 6.64169 6.94672 7.27149 7.28744 7.34688 7.44910 8.79483 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.036902 B = 0.003558 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.592231 B = 7867.847053 C = 8051.443626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.026 3.974 3 Si 0.963 3.037 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.558 4.558 8 H 0.067 0.933 9 C 0.234 3.766 10 O -0.585 6.585 11 C -0.111 4.111 12 C 0.108 3.892 13 N -0.634 5.634 14 C 0.714 3.286 15 O -0.639 6.639 16 N -0.726 5.726 17 C 0.222 3.778 18 C -0.019 4.019 19 C -0.227 4.227 20 C -0.036 4.036 21 O 0.104 5.896 22 N -0.383 5.383 23 C 0.142 3.858 24 H 0.270 0.730 25 H 0.375 0.625 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.407 0.593 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.196 0.804 34 H 0.269 0.731 35 H 0.029 0.971 36 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.754 -20.941 -4.478 21.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.175 4.175 3 Si 0.789 3.211 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.596 4.596 8 H 0.085 0.915 9 C 0.194 3.806 10 O -0.393 6.393 11 C -0.148 4.148 12 C -0.014 4.014 13 N -0.371 5.371 14 C 0.416 3.584 15 O -0.521 6.521 16 N -0.384 5.384 17 C 0.098 3.902 18 C -0.176 4.176 19 C -0.249 4.249 20 C -0.117 4.117 21 O 0.033 5.967 22 N -0.085 5.085 23 C 0.018 3.982 24 H 0.079 0.921 25 H 0.225 0.775 26 H 0.100 0.900 27 H 0.111 0.889 28 H 0.093 0.907 29 H 0.113 0.887 30 H 0.243 0.757 31 H 0.113 0.887 32 H 0.083 0.917 33 H 0.213 0.787 34 H 0.284 0.716 35 H 0.047 0.953 36 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 0.020 -20.335 -5.598 21.092 hybrid contribution -0.828 1.559 0.416 1.814 sum -0.808 -18.776 -5.182 19.495 Atomic orbital electron populations 1.69807 1.07073 1.28415 1.50081 1.25814 0.95821 1.02814 0.93093 0.85421 0.79134 0.79025 0.77543 1.18917 1.21059 1.20191 1.21856 0.93932 0.91373 1.52421 0.91515 1.19698 0.87045 0.93442 0.80447 1.86091 1.51718 1.56254 1.45267 1.22759 0.96865 0.93738 1.01485 1.22444 0.92415 0.94765 0.91779 1.47894 1.51566 1.12054 1.25548 1.15604 0.79994 0.82314 0.80484 1.90862 1.46684 1.60820 1.53776 1.44835 1.55507 1.07466 1.30617 1.19188 0.98240 0.85069 0.87740 1.23542 0.93817 0.98040 1.02208 1.23107 1.04727 0.90065 1.06990 1.26969 0.85590 1.03379 0.95776 1.84831 1.39041 1.15424 1.57354 1.73948 1.22383 0.91957 1.20222 1.22376 0.99323 0.78785 0.97690 0.92074 0.77544 0.89979 0.88942 0.90664 0.88745 0.75684 0.88722 0.91705 0.78717 0.71584 0.95257 0.95058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.22 10.96 21.45 0.24 -49.98 16 2 C 0.03 1.36 5.28 84.66 0.45 1.80 16 3 Si 0.96 42.52 29.54 68.60 2.03 44.54 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.56 -29.52 8.13 25.60 0.21 -29.31 16 8 H 0.07 3.45 7.78 -2.91 -0.02 3.42 16 9 C 0.23 11.39 0.85 -10.35 -0.01 11.38 16 10 O -0.59 -29.42 13.07 -148.98 -1.95 -31.37 16 11 C -0.11 -4.23 6.24 32.07 0.20 -4.03 16 12 C 0.11 3.56 6.58 86.93 0.57 4.13 16 13 N -0.63 -26.52 3.32 -829.31 -2.76 -29.28 16 14 C 0.71 29.42 8.49 179.06 1.52 30.94 16 15 O -0.64 -31.94 16.67 -4.01 -0.07 -32.01 16 16 N -0.73 -21.86 5.51 -482.29 -2.66 -24.52 16 17 C 0.22 5.86 6.26 85.63 0.54 6.40 16 18 C -0.02 -0.39 6.70 43.58 0.29 -0.10 16 19 C -0.23 -2.97 11.12 22.40 0.25 -2.72 16 20 C -0.04 -0.32 12.30 67.18 0.83 0.51 16 21 O 0.10 1.76 11.20 71.62 0.80 2.56 16 22 N -0.38 -8.90 12.07 -49.56 -0.60 -9.50 16 23 C 0.14 7.20 5.23 86.73 0.45 7.65 16 24 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 25 H 0.38 19.73 7.45 -74.06 -0.55 19.18 16 26 H 0.08 3.04 8.05 -2.38 -0.02 3.02 16 27 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 28 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.09 2.40 7.29 -2.39 -0.02 2.38 16 30 H 0.41 10.25 6.94 -92.71 -0.64 9.61 16 31 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.20 1.63 8.06 -2.91 -0.02 1.61 16 34 H 0.27 -0.69 8.06 -2.91 -0.02 -0.71 16 35 H 0.03 1.65 7.81 -2.39 -0.02 1.63 16 36 H 0.03 1.75 7.92 -2.39 -0.02 1.73 16 Total: -1.00 -71.79 311.08 0.27 -71.52 By element: Atomic # 1 Polarization: 31.44 SS G_CDS: -0.07 Total: 31.38 kcal Atomic # 6 Polarization: 21.37 SS G_CDS: 5.29 Total: 26.66 kcal Atomic # 7 Polarization: -107.50 SS G_CDS: -5.78 Total: -113.28 kcal Atomic # 8 Polarization: -59.61 SS G_CDS: -1.21 Total: -60.82 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Total: -71.79 0.27 -71.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326014981.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.368 kcal (2) G-P(sol) polarization free energy of solvation -71.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds