Wall clock time and date at job start Tue Mar 31 2020 05:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30147 * 126.81568 * 2 1 4 4 O 1.20891 * 111.78118 * 180.26546 * 3 2 1 5 5 C 1.34232 * 111.65947 * 359.73112 * 4 3 2 6 6 C 1.50709 * 126.82741 * 180.02562 * 5 4 3 7 7 C 1.35998 * 106.33929 * 359.97438 * 5 4 3 8 8 N 1.40414 * 128.07340 * 179.97438 * 7 5 4 9 9 C 1.34769 * 119.99890 * 138.80790 * 8 7 5 10 10 O 1.21397 * 120.00310 * 6.25364 * 9 8 7 11 11 C 1.49329 * 119.99865 * 186.25589 * 9 8 7 12 12 O 1.21362 * 119.99655 * 355.31799 * 11 9 8 13 13 N 1.34773 * 119.99741 * 175.04964 * 11 9 8 14 14 C 1.46500 * 120.00348 * 3.47653 * 13 11 9 15 15 C 1.46504 * 119.99859 * 183.47181 * 13 11 9 16 16 C 1.50699 * 109.46956 * 89.99967 * 15 13 11 17 17 H 1.08007 * 119.99998 * 0.02562 * 16 15 13 18 18 C 1.37875 * 120.00322 * 180.02562 * 16 15 13 19 19 N 1.31520 * 120.00010 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99954 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.46975 * 89.99780 * 20 18 16 22 22 H 1.48497 * 109.47266 * 209.99797 * 20 18 16 23 23 H 1.48505 * 109.46762 * 330.00307 * 20 18 16 24 24 H 1.09003 * 109.47028 * 269.56546 * 1 2 3 25 25 H 1.08993 * 109.47175 * 29.56854 * 1 2 3 26 26 H 1.09004 * 109.46768 * 149.57045 * 1 2 3 27 27 H 1.09003 * 109.46893 * 269.97074 * 6 5 4 28 28 H 1.08997 * 109.47231 * 29.97476 * 6 5 4 29 29 H 1.09000 * 109.46776 * 149.97287 * 6 5 4 30 30 H 0.97004 * 119.99743 * 318.80597 * 8 7 5 31 31 H 1.08996 * 109.46995 * 83.51383 * 14 13 11 32 32 H 1.09000 * 109.47333 * 203.51299 * 14 13 11 33 33 H 1.08998 * 109.46961 * 323.51379 * 14 13 11 34 34 H 1.08997 * 109.47169 * 210.00158 * 15 13 11 35 35 H 1.09004 * 109.47181 * 330.00366 * 15 13 11 36 36 H 0.97001 * 119.99136 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0419 0.0000 4 8 3.4544 0.7283 -0.0052 5 6 3.6093 -0.6050 -0.0036 6 6 4.9118 -1.3632 -0.0082 7 6 2.3571 -1.1356 0.0041 8 7 1.9911 -2.4912 0.0080 9 6 0.9719 -2.9118 0.7829 10 8 0.2977 -2.1049 1.3897 11 6 0.6718 -4.3703 0.8952 12 8 1.2899 -5.1703 0.2238 13 7 -0.2816 -4.7985 1.7460 14 6 -1.0759 -3.8288 2.5044 15 6 -0.5239 -6.2337 1.9125 16 6 0.3486 -6.7652 3.0204 17 1 1.0164 -6.1003 3.5481 18 6 0.2943 -8.1003 3.3605 19 7 1.0554 -8.5639 4.3277 20 14 -0.8601 -9.2505 2.4474 21 1 -0.1553 -9.8328 1.2772 22 1 -1.2938 -10.3412 3.3570 23 1 -2.0489 -8.4918 1.9821 24 1 -0.3633 -0.0078 1.0277 25 1 -0.3633 0.8938 -0.5071 26 1 -0.3633 -0.8862 -0.5205 27 1 5.2209 -1.5481 -1.0370 28 1 5.6759 -0.7757 0.5008 29 1 4.7805 -2.3140 0.5083 30 1 2.4720 -3.1250 -0.5471 31 1 -1.9010 -3.4732 1.8874 32 1 -1.4720 -4.3056 3.4011 33 1 -0.4456 -2.9863 2.7891 34 1 -1.5715 -6.3986 2.1641 35 1 -0.2874 -6.7523 0.9833 36 1 1.0168 -9.5031 4.5671 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327187961.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:20 Heat of formation + Delta-G solvation = 10.645184 kcal Electronic energy + Delta-G solvation = -22167.060619 eV Core-core repulsion = 18655.907492 eV Total energy + Delta-G solvation = -3511.153127 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.05749 -40.59218 -38.29572 -36.24409 -35.02949 -34.05943 -32.62926 -32.42840 -28.84371 -28.67651 -27.84287 -26.41711 -24.91332 -22.91784 -21.35550 -20.85314 -19.43878 -17.95166 -17.83497 -17.30737 -17.10029 -16.31619 -15.73976 -15.58295 -15.14054 -14.45091 -14.18745 -13.84594 -13.55772 -13.33445 -13.21386 -13.13364 -12.70520 -12.58331 -12.45917 -12.44281 -12.15289 -11.71552 -11.56604 -11.17923 -10.89213 -10.67470 -10.60552 -10.22309 -9.75574 -9.64003 -9.03686 -8.71615 -8.69007 -7.94602 -6.18632 -4.19610 1.12516 1.64658 2.11277 2.36121 3.02378 3.22861 3.28909 3.30457 3.54410 3.81673 4.19365 4.24783 4.30494 4.57525 4.76554 5.05531 5.13922 5.16826 5.24823 5.45926 5.60468 5.61370 5.73683 5.81486 5.96068 6.10209 6.13081 6.44123 6.48546 6.73348 6.92825 7.05589 7.45092 7.70072 7.95372 8.12012 8.28815 8.49073 8.83465 9.39531 10.94302 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029823 B = 0.004182 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.650515 B = 6693.253396 C = 7167.642661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.040 3.960 3 N -0.362 5.362 4 O 0.103 5.897 5 C -0.047 4.047 6 C -0.074 4.074 7 C 0.030 3.970 8 N -0.620 5.620 9 C 0.512 3.488 10 O -0.496 6.496 11 C 0.501 3.499 12 O -0.524 6.524 13 N -0.555 5.555 14 C 0.068 3.932 15 C 0.212 3.788 16 C -0.536 4.536 17 H 0.076 0.924 18 C 0.075 3.925 19 N -0.893 5.893 20 Si 0.877 3.123 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.265 1.265 24 H 0.094 0.906 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.426 0.574 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.039 0.961 35 H 0.042 0.958 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.986 14.569 -9.572 17.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.121 4.121 3 N -0.069 5.069 4 O 0.041 5.959 5 C -0.113 4.113 6 C -0.131 4.131 7 C -0.068 4.068 8 N -0.272 5.272 9 C 0.296 3.704 10 O -0.369 6.369 11 C 0.282 3.718 12 O -0.402 6.402 13 N -0.286 5.286 14 C -0.075 4.075 15 C 0.092 3.908 16 C -0.574 4.574 17 H 0.094 0.906 18 C -0.128 4.128 19 N -0.531 5.531 20 Si 0.703 3.297 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.190 1.190 24 H 0.112 0.888 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.108 0.892 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.265 0.735 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.113 0.887 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.614 15.806 -9.322 18.421 hybrid contribution -0.362 -1.852 -0.498 1.952 sum 1.252 13.954 -9.820 17.109 Atomic orbital electron populations 1.20182 0.85165 1.02291 1.04298 1.23482 0.99292 0.87414 1.01911 1.73804 0.89142 1.23332 1.20644 1.84847 1.21416 1.21286 1.68363 1.24079 0.97303 0.84249 1.05711 1.20364 0.89714 0.98842 1.04193 1.18030 0.91708 0.86114 1.10962 1.42380 1.35128 1.05176 1.44516 1.20906 0.79981 0.90738 0.78824 1.90671 1.47644 1.55969 1.42620 1.19405 0.82521 0.87024 0.82883 1.90743 1.49436 1.55262 1.44716 1.47771 1.32753 1.09555 1.38521 1.22269 0.95927 0.93163 0.96156 1.19908 0.97333 0.75016 0.98534 1.21254 1.23889 0.95174 1.17127 0.90585 1.24838 0.95420 0.97768 0.94744 1.69892 1.38963 1.15060 1.29169 0.86846 0.81623 0.81081 0.80141 1.19754 1.20891 1.18966 0.88754 0.91434 0.90760 0.89241 0.89362 0.88884 0.73520 0.93066 0.90871 0.88667 0.94318 0.93991 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.76 8.53 36.00 0.31 -0.45 16 2 C 0.04 0.55 6.98 -81.92 -0.57 -0.02 16 3 N -0.36 -5.06 12.06 33.58 0.40 -4.66 16 4 O 0.10 1.28 11.20 16.67 0.19 1.47 16 5 C -0.05 -0.52 7.52 -35.11 -0.26 -0.78 16 6 C -0.07 -0.53 10.45 36.01 0.38 -0.15 16 7 C 0.03 0.40 6.66 -83.34 -0.55 -0.16 16 8 N -0.62 -8.32 5.45 -10.09 -0.05 -8.38 16 9 C 0.51 8.23 7.41 -11.65 -0.09 8.14 16 10 O -0.50 -8.02 9.23 5.46 0.05 -7.97 16 11 C 0.50 9.76 7.73 -11.64 -0.09 9.67 16 12 O -0.52 -11.38 16.05 5.49 0.09 -11.29 16 13 N -0.56 -11.30 2.86 -183.52 -0.52 -11.82 16 14 C 0.07 1.13 9.54 59.85 0.57 1.70 16 15 C 0.21 4.97 4.22 -5.19 -0.02 4.95 16 16 C -0.54 -14.88 9.94 -34.44 -0.34 -15.22 16 17 H 0.08 2.33 8.06 -52.48 -0.42 1.90 16 18 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 19 N -0.89 -26.73 13.96 55.43 0.77 -25.96 16 20 Si 0.88 20.67 27.47 -169.99 -4.67 16.00 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.26 -5.86 6.54 56.52 0.37 -5.49 16 24 H 0.09 1.21 7.17 -51.93 -0.37 0.84 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.91 7.44 -51.93 -0.39 0.52 16 27 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.43 5.02 8.31 -40.82 -0.34 4.68 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 1.22 8.02 -51.93 -0.42 0.80 16 33 H 0.10 1.58 5.37 -51.93 -0.28 1.30 16 34 H 0.04 0.86 7.13 -51.93 -0.37 0.49 16 35 H 0.04 1.02 6.81 -51.93 -0.35 0.67 16 36 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 310.80 15.07 4.68 4.68 Total: -1.00 -32.55 310.80 -4.06 -36.60 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -4.22 Total: 1.62 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: -0.77 Total: 9.70 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: 0.60 Total: -50.82 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: 0.33 Total: -17.79 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.67 Total: 16.00 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.55 -4.06 -36.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327187961.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.249 kcal (2) G-P(sol) polarization free energy of solvation -32.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds