Wall clock time and date at job start Tue Mar 31 2020 05:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30147 * 126.81568 * 2 1 4 4 O 1.20891 * 111.78118 * 180.26546 * 3 2 1 5 5 C 1.34232 * 111.65947 * 359.73112 * 4 3 2 6 6 C 1.50709 * 126.82741 * 180.02562 * 5 4 3 7 7 C 1.35998 * 106.33929 * 359.97438 * 5 4 3 8 8 N 1.40414 * 128.07340 * 179.97438 * 7 5 4 9 9 C 1.34769 * 119.99890 * 138.80790 * 8 7 5 10 10 O 1.21397 * 120.00310 * 6.25364 * 9 8 7 11 11 C 1.49329 * 119.99865 * 186.25589 * 9 8 7 12 12 O 1.21362 * 119.99655 * 355.31799 * 11 9 8 13 13 N 1.34773 * 119.99741 * 175.04964 * 11 9 8 14 14 C 1.46500 * 120.00348 * 3.47653 * 13 11 9 15 15 C 1.46504 * 119.99859 * 183.47181 * 13 11 9 16 16 C 1.50699 * 109.46956 * 89.99967 * 15 13 11 17 17 H 1.08007 * 119.99998 * 0.02562 * 16 15 13 18 18 C 1.37875 * 120.00322 * 180.02562 * 16 15 13 19 19 N 1.31520 * 120.00010 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99954 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.46975 * 89.99780 * 20 18 16 22 22 H 1.48497 * 109.47266 * 209.99797 * 20 18 16 23 23 H 1.48505 * 109.46762 * 330.00307 * 20 18 16 24 24 H 1.09003 * 109.47028 * 269.56546 * 1 2 3 25 25 H 1.08993 * 109.47175 * 29.56854 * 1 2 3 26 26 H 1.09004 * 109.46768 * 149.57045 * 1 2 3 27 27 H 1.09003 * 109.46893 * 269.97074 * 6 5 4 28 28 H 1.08997 * 109.47231 * 29.97476 * 6 5 4 29 29 H 1.09000 * 109.46776 * 149.97287 * 6 5 4 30 30 H 0.97004 * 119.99743 * 318.80597 * 8 7 5 31 31 H 1.08996 * 109.46995 * 83.51383 * 14 13 11 32 32 H 1.09000 * 109.47333 * 203.51299 * 14 13 11 33 33 H 1.08998 * 109.46961 * 323.51379 * 14 13 11 34 34 H 1.08997 * 109.47169 * 210.00158 * 15 13 11 35 35 H 1.09004 * 109.47181 * 330.00366 * 15 13 11 36 36 H 0.97001 * 119.99136 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0419 0.0000 4 8 3.4544 0.7283 -0.0052 5 6 3.6093 -0.6050 -0.0036 6 6 4.9118 -1.3632 -0.0082 7 6 2.3571 -1.1356 0.0041 8 7 1.9911 -2.4912 0.0080 9 6 0.9719 -2.9118 0.7829 10 8 0.2977 -2.1049 1.3897 11 6 0.6718 -4.3703 0.8952 12 8 1.2899 -5.1703 0.2238 13 7 -0.2816 -4.7985 1.7460 14 6 -1.0759 -3.8288 2.5044 15 6 -0.5239 -6.2337 1.9125 16 6 0.3486 -6.7652 3.0204 17 1 1.0164 -6.1003 3.5481 18 6 0.2943 -8.1003 3.3605 19 7 1.0554 -8.5639 4.3277 20 14 -0.8601 -9.2505 2.4474 21 1 -0.1553 -9.8328 1.2772 22 1 -1.2938 -10.3412 3.3570 23 1 -2.0489 -8.4918 1.9821 24 1 -0.3633 -0.0078 1.0277 25 1 -0.3633 0.8938 -0.5071 26 1 -0.3633 -0.8862 -0.5205 27 1 5.2209 -1.5481 -1.0370 28 1 5.6759 -0.7757 0.5008 29 1 4.7805 -2.3140 0.5083 30 1 2.4720 -3.1250 -0.5471 31 1 -1.9010 -3.4732 1.8874 32 1 -1.4720 -4.3056 3.4011 33 1 -0.4456 -2.9863 2.7891 34 1 -1.5715 -6.3986 2.1641 35 1 -0.2874 -6.7523 0.9833 36 1 1.0168 -9.5031 4.5671 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327187961.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:20 Heat of formation + Delta-G solvation = -12.887962 kcal Electronic energy + Delta-G solvation = -22168.081093 eV Core-core repulsion = 18655.907492 eV Total energy + Delta-G solvation = -3512.173601 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.06098 -41.94993 -39.74748 -37.53542 -36.49180 -35.05106 -34.66282 -33.43127 -30.71779 -29.66656 -28.70773 -27.79543 -26.43768 -24.44762 -22.68750 -21.93333 -20.74161 -19.18500 -19.06766 -18.94355 -18.59446 -17.68376 -17.17068 -16.78226 -16.63040 -16.13733 -15.44001 -15.14295 -14.84012 -14.43784 -14.33254 -14.10660 -14.01741 -13.90364 -13.71323 -13.55217 -13.40178 -13.30062 -13.05600 -12.58192 -12.47545 -12.28534 -12.00463 -11.77269 -11.71292 -10.83166 -10.75210 -10.46132 -9.76553 -9.57062 -8.34234 -6.41661 0.03877 0.45952 0.96450 1.18594 1.37869 1.40174 1.49098 1.98893 2.16218 2.32145 2.53020 2.99883 3.13460 3.25104 3.39624 3.79943 4.21583 4.35056 4.42399 4.62476 4.65189 4.65662 4.67681 4.72413 4.81304 4.86117 4.92827 5.10416 5.14742 5.23923 5.36427 5.41257 5.78910 6.15906 6.30290 6.58974 6.61777 6.90516 7.15158 7.22990 8.82354 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029823 B = 0.004182 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.650515 B = 6693.253396 C = 7167.642661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.028 3.972 3 N -0.381 5.381 4 O 0.103 5.897 5 C -0.022 4.022 6 C -0.076 4.076 7 C 0.000 4.000 8 N -0.604 5.604 9 C 0.520 3.480 10 O -0.497 6.497 11 C 0.496 3.504 12 O -0.552 6.552 13 N -0.566 5.566 14 C 0.069 3.931 15 C 0.219 3.781 16 C -0.544 4.544 17 H 0.029 0.971 18 C 0.016 3.984 19 N -0.943 5.943 20 Si 0.948 3.052 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.236 1.236 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.116 0.884 28 H 0.108 0.892 29 H 0.091 0.909 30 H 0.433 0.567 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.060 0.940 35 H 0.036 0.964 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.415 15.043 -10.989 18.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.132 4.132 3 N -0.089 5.089 4 O 0.042 5.958 5 C -0.088 4.088 6 C -0.133 4.133 7 C -0.098 4.098 8 N -0.255 5.255 9 C 0.302 3.698 10 O -0.371 6.371 11 C 0.278 3.722 12 O -0.432 6.432 13 N -0.297 5.297 14 C -0.072 4.072 15 C 0.098 3.902 16 C -0.582 4.582 17 H 0.048 0.952 18 C -0.183 4.183 19 N -0.582 5.582 20 Si 0.770 3.230 21 H -0.196 1.196 22 H -0.203 1.203 23 H -0.159 1.159 24 H 0.105 0.895 25 H 0.100 0.900 26 H 0.091 0.909 27 H 0.134 0.866 28 H 0.126 0.874 29 H 0.110 0.890 30 H 0.274 0.726 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.078 0.922 35 H 0.054 0.946 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.051 16.337 -10.752 19.586 hybrid contribution -0.032 -1.902 -0.028 1.902 sum 1.019 14.435 -10.780 18.045 Atomic orbital electron populations 1.20168 0.84494 1.02970 1.03970 1.23786 1.00053 0.87657 1.01726 1.73797 0.89626 1.23735 1.21781 1.84835 1.20941 1.21932 1.68093 1.24736 0.98104 0.83679 1.02317 1.20629 0.88164 0.98361 1.06141 1.18130 0.92594 0.85524 1.13594 1.42092 1.34183 1.05689 1.43577 1.20141 0.81013 0.88937 0.79661 1.90675 1.48085 1.55317 1.43069 1.19960 0.81629 0.88557 0.82043 1.90713 1.50167 1.56558 1.45723 1.47833 1.33647 1.08983 1.39236 1.22405 0.96298 0.92240 0.96269 1.19637 0.97273 0.76918 0.96362 1.21463 1.23788 0.94961 1.17977 0.95232 1.25828 0.97266 0.99669 0.95537 1.70046 1.41179 1.15760 1.31223 0.85713 0.80060 0.78671 0.78543 1.19562 1.20313 1.15906 0.89464 0.89953 0.90887 0.86577 0.87385 0.89033 0.72634 0.90281 0.91132 0.88604 0.92221 0.94595 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.37 8.53 71.24 0.61 -0.76 16 2 C 0.03 0.74 6.98 43.70 0.31 1.05 16 3 N -0.38 -10.22 12.06 -48.90 -0.59 -10.81 16 4 O 0.10 2.39 11.20 69.84 0.78 3.17 16 5 C -0.02 -0.44 7.52 25.17 0.19 -0.25 16 6 C -0.08 -0.88 10.45 71.24 0.74 -0.13 16 7 C 0.00 -0.01 6.66 38.14 0.25 0.25 16 8 N -0.60 -15.55 5.45 -304.18 -1.66 -17.21 16 9 C 0.52 16.31 7.41 87.23 0.65 16.96 16 10 O -0.50 -15.61 9.23 -3.39 -0.03 -15.64 16 11 C 0.50 19.18 7.73 87.23 0.67 19.86 16 12 O -0.55 -23.99 16.05 -3.29 -0.05 -24.04 16 13 N -0.57 -22.74 2.86 -852.88 -2.44 -25.18 16 14 C 0.07 2.24 9.54 127.77 1.22 3.46 16 15 C 0.22 10.12 4.22 85.63 0.36 10.48 16 16 C -0.54 -30.71 9.94 25.60 0.25 -30.46 16 17 H 0.03 1.89 8.06 -2.91 -0.02 1.86 16 18 C 0.02 0.89 5.47 84.65 0.46 1.35 16 19 N -0.94 -57.74 13.96 21.45 0.30 -57.44 16 20 Si 0.95 42.04 27.47 68.60 1.88 43.92 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 22 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 23 H -0.24 -9.30 6.54 99.48 0.65 -8.65 16 24 H 0.09 2.16 7.17 -2.39 -0.02 2.14 16 25 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.07 1.70 7.44 -2.38 -0.02 1.68 16 27 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.11 0.88 8.14 -2.39 -0.02 0.87 16 29 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.43 9.75 8.31 -92.70 -0.77 8.98 16 31 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.07 2.29 8.02 -2.39 -0.02 2.27 16 33 H 0.10 3.10 5.37 -2.46 -0.01 3.09 16 34 H 0.06 2.51 7.13 -2.39 -0.02 2.49 16 35 H 0.04 1.71 6.81 -2.38 -0.02 1.69 16 36 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -71.47 310.80 4.22 -67.25 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.30 Total: 14.17 kcal Atomic # 6 Polarization: 16.07 SS G_CDS: 5.72 Total: 21.79 kcal Atomic # 7 Polarization: -106.25 SS G_CDS: -4.38 Total: -110.63 kcal Atomic # 8 Polarization: -37.21 SS G_CDS: 0.70 Total: -36.51 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 1.88 Total: 43.92 kcal Total: -71.47 4.22 -67.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327187961.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.363 kcal (2) G-P(sol) polarization free energy of solvation -71.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds