Wall clock time and date at job start Tue Mar 31 2020 05:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00007 * 2 1 4 4 H 1.48498 * 109.47039 * 239.99103 * 3 2 1 5 5 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47130 * 119.99821 * 3 2 1 7 7 C 1.37876 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47208 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27843 * 11 10 9 14 14 C 1.47146 * 120.98235 * 359.43705 * 13 11 10 15 15 C 1.52879 * 108.60942 * 230.50413 * 14 13 11 16 16 O 1.42971 * 109.29679 * 307.93911 * 15 14 13 17 17 C 1.42953 * 114.16456 * 62.44690 * 16 15 14 18 18 H 1.09003 * 109.55745 * 57.37105 * 17 16 15 19 19 C 1.50700 * 109.51257 * 177.49243 * 17 16 15 20 20 N 1.34496 * 126.29035 * 224.46279 * 19 17 16 21 21 C 1.31132 * 105.61099 * 179.90467 * 20 19 17 22 22 O 1.33637 * 106.90222 * 0.35263 * 21 20 19 23 23 N 1.21304 * 109.80888 * 359.76773 * 22 21 20 24 24 C 1.47158 * 120.97744 * 179.72646 * 13 11 10 25 25 H 0.97008 * 119.99515 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47500 * 59.99948 * 9 7 2 27 27 H 1.08998 * 109.47585 * 299.99943 * 9 7 2 28 28 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 29 29 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 30 30 H 1.08994 * 109.68581 * 350.29085 * 14 13 11 31 31 H 1.09010 * 109.67942 * 110.83947 * 14 13 11 32 32 H 1.08998 * 109.58251 * 187.92850 * 15 14 13 33 33 H 1.08992 * 109.40884 * 67.84614 * 15 14 13 34 34 H 1.08004 * 126.54981 * 180.12241 * 21 20 19 35 35 H 1.09002 * 109.67855 * 249.16031 * 24 13 11 36 36 H 1.09002 * 109.68168 * 9.68042 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1031 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4916 -4.9672 -0.0001 12 8 0.2788 -4.9671 0.0000 13 7 2.1655 -6.1344 0.0055 14 6 3.6368 -6.1596 -0.0002 15 6 4.1044 -7.0972 -1.1135 16 8 3.4476 -8.3596 -0.9750 17 6 2.0257 -8.2973 -1.1083 18 1 1.7685 -7.8666 -2.0760 19 6 1.4492 -9.6859 -1.0063 20 7 0.4999 -10.2140 -1.7994 21 6 0.3075 -11.4329 -1.3559 22 8 1.1296 -11.6023 -0.3159 23 7 1.7740 -10.5912 -0.1324 24 6 1.4516 -7.4212 0.0110 25 1 -0.4850 0.8402 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8719 -3.6043 0.8906 29 1 2.8719 -3.6043 -0.8894 30 1 4.0205 -5.1558 -0.1819 31 1 4.0014 -6.5242 0.9603 32 1 5.1829 -7.2383 -1.0434 33 1 3.8563 -6.6621 -2.0815 34 1 -0.3858 -12.1598 -1.7527 35 1 1.5924 -7.9149 0.9725 36 1 0.3889 -7.2521 -0.1628 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327670227.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:16 Heat of formation + Delta-G solvation = -32.396646 kcal Electronic energy + Delta-G solvation = -21701.591545 eV Core-core repulsion = 18188.571985 eV Total energy + Delta-G solvation = -3513.019561 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.74933 -41.54150 -39.68469 -37.01617 -35.96315 -35.63281 -34.09778 -33.11322 -32.03077 -29.40343 -27.88175 -26.15875 -25.20815 -24.33724 -23.52636 -22.32109 -20.19624 -19.24505 -19.17786 -18.83390 -17.91506 -17.72917 -17.08694 -16.90751 -16.49588 -16.39275 -16.28934 -15.83712 -15.09146 -14.97525 -14.26684 -14.02541 -13.87725 -13.68270 -13.45660 -13.03858 -12.97891 -12.78700 -12.68926 -12.49622 -12.20900 -12.00073 -11.94524 -11.60658 -11.45618 -11.33981 -11.28839 -10.78858 -10.56272 -9.77464 -8.18118 -6.32499 0.18814 1.02040 1.42701 1.47175 1.53677 1.54816 1.72215 1.98044 2.27208 2.42958 2.85047 3.15118 3.21696 3.42050 3.60646 3.70292 3.93208 4.03430 4.13712 4.28406 4.32135 4.41814 4.46262 4.51772 4.68256 4.70403 4.83432 4.94783 5.02452 5.25973 5.49067 5.59896 5.79515 5.83676 6.15360 6.19265 6.85337 7.08907 7.13052 7.38012 8.94477 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.039554 B = 0.003227 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.721786 B = 8674.840422 C = 9151.074099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.007 4.007 3 Si 0.974 3.026 4 H -0.261 1.261 5 H -0.290 1.290 6 H -0.262 1.262 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.042 3.958 10 C -0.114 4.114 11 C 0.515 3.485 12 O -0.584 6.584 13 N -0.618 5.618 14 C 0.064 3.936 15 C 0.048 3.952 16 O -0.379 6.379 17 C 0.181 3.819 18 H 0.091 0.909 19 C 0.155 3.845 20 N -0.515 5.515 21 C 0.192 3.808 22 O 0.089 5.911 23 N -0.377 5.377 24 C 0.096 3.904 25 H 0.263 0.737 26 H -0.018 1.018 27 H -0.020 1.020 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.123 0.877 31 H 0.093 0.907 32 H 0.150 0.850 33 H 0.066 0.934 34 H 0.325 0.675 35 H 0.077 0.923 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.781 -23.951 -3.211 25.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.798 3.202 4 H -0.185 1.185 5 H -0.215 1.215 6 H -0.186 1.186 7 C -0.580 4.580 8 H 0.097 0.903 9 C 0.004 3.996 10 C -0.153 4.153 11 C 0.306 3.694 12 O -0.463 6.463 13 N -0.353 5.353 14 C -0.057 4.057 15 C -0.028 4.028 16 O -0.297 6.297 17 C 0.120 3.880 18 H 0.109 0.891 19 C -0.118 4.118 20 N -0.248 5.248 21 C -0.047 4.047 22 O 0.025 5.975 23 N -0.082 5.082 24 C -0.028 4.028 25 H 0.071 0.929 26 H 0.001 0.999 27 H -0.001 1.001 28 H 0.126 0.874 29 H 0.129 0.871 30 H 0.141 0.859 31 H 0.111 0.889 32 H 0.167 0.833 33 H 0.085 0.915 34 H 0.340 0.660 35 H 0.096 0.904 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.670 -23.470 -2.818 25.178 hybrid contribution -0.686 0.951 -0.079 1.175 sum 7.985 -22.518 -2.897 24.067 Atomic orbital electron populations 1.70180 1.08390 1.27883 1.51413 1.26153 0.95700 1.04016 0.94620 0.85364 0.78028 0.77255 0.79542 1.18534 1.21537 1.18646 1.21674 0.94098 0.91383 1.50881 0.90251 1.18703 0.93703 0.92479 0.94685 1.21674 0.99359 0.89208 1.05053 1.21589 0.87710 0.86352 0.73763 1.90657 1.16675 1.87776 1.51201 1.48288 1.08330 1.04343 1.74328 1.22749 0.77484 1.03911 1.01582 1.23289 0.99537 0.82238 0.97750 1.87966 1.16227 1.32103 1.93436 1.20071 0.82640 0.85965 0.99281 0.89093 1.25144 0.96246 0.98684 0.91694 1.71831 1.16280 1.09103 1.27537 1.31763 0.93818 0.94577 0.84577 1.85310 1.39089 1.30687 1.42414 1.74699 1.15888 0.95313 1.22277 1.21983 0.98068 0.83976 0.98785 0.92875 0.99942 1.00110 0.87404 0.87114 0.85930 0.88863 0.83269 0.91549 0.66047 0.90429 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.60 13.29 21.45 0.28 -59.31 16 2 C -0.01 -0.43 5.46 84.65 0.46 0.03 16 3 Si 0.97 43.84 29.54 68.60 2.03 45.87 16 4 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 7 C -0.54 -30.45 9.11 25.60 0.23 -30.21 16 8 H 0.08 3.98 7.74 -2.91 -0.02 3.96 16 9 C 0.04 2.32 4.26 29.85 0.13 2.45 16 10 C -0.11 -4.48 4.01 29.85 0.12 -4.36 16 11 C 0.51 20.52 7.71 87.66 0.68 21.20 16 12 O -0.58 -29.47 15.45 -3.04 -0.05 -29.51 16 13 N -0.62 -18.49 3.03 -818.14 -2.48 -20.97 16 14 C 0.06 1.27 6.51 86.22 0.56 1.83 16 15 C 0.05 0.81 6.97 71.94 0.50 1.32 16 16 O -0.38 -8.91 10.37 -148.98 -1.54 -10.46 16 17 C 0.18 4.67 3.33 29.95 0.10 4.77 16 18 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 19 C 0.16 3.86 7.10 138.46 0.98 4.84 16 20 N -0.51 -10.87 11.55 -315.37 -3.64 -14.51 16 21 C 0.19 2.03 13.40 130.52 1.75 3.78 16 22 O 0.09 1.45 11.31 74.89 0.85 2.29 16 23 N -0.38 -9.00 12.16 -60.39 -0.73 -9.73 16 24 C 0.10 2.83 5.91 86.35 0.51 3.34 16 25 H 0.26 15.66 8.31 -92.70 -0.77 14.89 16 26 H -0.02 -1.12 8.10 -2.39 -0.02 -1.14 16 27 H -0.02 -1.24 8.10 -2.39 -0.02 -1.26 16 28 H 0.11 3.69 8.02 -2.38 -0.02 3.67 16 29 H 0.11 3.70 7.65 -2.39 -0.02 3.68 16 30 H 0.12 2.07 6.06 -2.39 -0.01 2.05 16 31 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.15 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 34 H 0.33 -1.35 8.06 -2.91 -0.02 -1.37 16 35 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.08 2.80 7.08 -2.39 -0.02 2.79 16 Total: -1.00 -86.17 311.62 1.84 -84.33 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: 1.10 Total: 3.01 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 6.02 Total: 8.99 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -6.57 Total: -104.53 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -0.75 Total: -37.68 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -86.17 1.84 -84.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327670227.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.936 kcal (2) G-P(sol) polarization free energy of solvation -86.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds