Wall clock time and date at job start Tue Mar 31 2020 05:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00103 * 2 1 4 4 H 1.48495 * 109.47359 * 269.99963 * 3 2 1 5 5 H 1.48501 * 109.47040 * 30.00391 * 3 2 1 6 6 H 1.48506 * 109.46952 * 149.99827 * 3 2 1 7 7 C 1.37884 * 119.99953 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00106 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99677 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47116 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47439 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99879 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00037 * 180.02562 * 11 10 9 14 14 C 1.47150 * 120.98376 * 0.02562 * 13 11 10 15 15 C 1.53296 * 108.38528 * 129.44501 * 14 13 11 16 16 O 1.42964 * 109.22135 * 52.30224 * 15 14 13 17 17 C 1.42960 * 114.16740 * 297.41748 * 16 15 14 18 18 H 1.09002 * 109.51546 * 302.65996 * 17 16 15 19 19 C 1.50697 * 109.55282 * 182.53104 * 17 16 15 20 20 N 1.34501 * 126.28952 * 134.84446 * 19 17 16 21 21 C 1.31133 * 105.61436 * 179.90393 * 20 19 17 22 22 O 1.33638 * 106.90014 * 0.35262 * 21 20 19 23 23 N 1.21303 * 109.81074 * 359.76916 * 22 21 20 24 24 C 1.47152 * 120.98211 * 180.02562 * 13 11 10 25 25 H 0.96993 * 119.99696 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46971 * 60.00521 * 9 7 2 27 27 H 1.08995 * 109.47605 * 299.99977 * 9 7 2 28 28 H 1.08996 * 109.46926 * 59.99411 * 10 9 7 29 29 H 1.09004 * 109.46769 * 300.00032 * 10 9 7 30 30 H 1.08996 * 109.68517 * 249.16927 * 14 13 11 31 31 H 1.08997 * 109.67801 * 9.72289 * 14 13 11 32 32 H 1.08997 * 109.51548 * 172.22770 * 15 14 13 33 33 H 1.09000 * 109.51318 * 292.32957 * 15 14 13 34 34 H 1.08002 * 126.54363 * 180.12146 * 21 20 19 35 35 H 1.08998 * 109.68438 * 110.83151 * 24 13 11 36 36 H 1.09001 * 109.71355 * 350.29011 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4917 -4.9672 -0.0012 12 8 0.2789 -4.9672 -0.0011 13 7 2.1655 -6.1344 -0.0008 14 6 3.6368 -6.1597 0.0009 15 6 4.1031 -7.0924 1.1245 16 8 3.4466 -8.3553 0.9907 17 6 2.0244 -8.2925 1.1223 18 1 1.7669 -7.8570 2.0878 19 6 1.4472 -9.6812 1.0264 20 7 0.5061 -10.2093 1.8292 21 6 0.3063 -11.4270 1.3854 22 8 1.1273 -11.6009 0.3454 23 7 1.7712 -10.5905 0.1564 24 6 1.4517 -7.4212 -0.0019 25 1 -0.4849 0.8400 -0.0004 26 1 0.6240 -2.5567 -0.8904 27 1 0.6247 -2.5572 0.8896 28 1 2.8719 -3.6044 0.8894 29 1 2.8718 -3.6044 -0.8906 30 1 3.9987 -6.5306 -0.9580 31 1 4.0210 -5.1546 0.1749 32 1 5.1817 -7.2338 1.0563 33 1 3.8540 -6.6522 2.0900 34 1 -0.3864 -12.1520 1.7864 35 1 1.5938 -7.9190 -0.9611 36 1 0.3887 -7.2521 0.1700 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327670228.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:19 Heat of formation + Delta-G solvation = -32.441983 kcal Electronic energy + Delta-G solvation = -21701.077860 eV Core-core repulsion = 18188.056334 eV Total energy + Delta-G solvation = -3513.021527 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -46.74869 -41.53421 -39.67959 -37.01297 -35.96193 -35.63250 -34.09215 -33.11277 -32.01690 -29.38566 -27.88059 -26.15892 -25.20897 -24.34261 -23.52706 -22.32130 -20.19546 -19.24508 -19.17763 -18.83411 -17.91389 -17.72308 -17.08721 -16.90786 -16.49545 -16.39027 -16.28520 -15.83272 -15.09264 -14.97155 -14.27023 -14.02216 -13.86863 -13.68581 -13.45466 -13.03719 -12.97087 -12.82820 -12.69696 -12.45474 -12.20685 -12.00057 -11.95626 -11.60402 -11.45512 -11.32352 -11.28704 -10.78688 -10.57217 -9.77175 -8.18269 -6.32468 0.18745 1.02051 1.42795 1.45478 1.53801 1.56265 1.72459 1.98143 2.27408 2.42869 2.85075 3.15111 3.21616 3.42186 3.60317 3.70601 3.92314 4.03579 4.14200 4.28487 4.32190 4.41928 4.46391 4.51827 4.68352 4.70456 4.83501 4.94804 5.02522 5.26088 5.49334 5.59943 5.79652 5.83786 6.15402 6.19424 6.85568 7.09055 7.13025 7.38003 8.94553 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.039509 B = 0.003227 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.531366 B = 8673.744863 C = 9148.166200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.974 3.026 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.253 1.253 7 C -0.541 4.541 8 H 0.079 0.921 9 C 0.042 3.958 10 C -0.114 4.114 11 C 0.515 3.485 12 O -0.584 6.584 13 N -0.618 5.618 14 C 0.064 3.936 15 C 0.048 3.952 16 O -0.379 6.379 17 C 0.181 3.819 18 H 0.091 0.909 19 C 0.155 3.845 20 N -0.515 5.515 21 C 0.191 3.809 22 O 0.089 5.911 23 N -0.377 5.377 24 C 0.096 3.904 25 H 0.262 0.738 26 H -0.020 1.020 27 H -0.018 1.018 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.123 0.877 32 H 0.149 0.851 33 H 0.067 0.933 34 H 0.325 0.675 35 H 0.078 0.922 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.773 -23.954 3.251 25.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.798 3.202 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.176 1.176 7 C -0.579 4.579 8 H 0.098 0.902 9 C 0.004 3.996 10 C -0.153 4.153 11 C 0.306 3.694 12 O -0.463 6.463 13 N -0.353 5.353 14 C -0.057 4.057 15 C -0.028 4.028 16 O -0.297 6.297 17 C 0.120 3.880 18 H 0.109 0.891 19 C -0.118 4.118 20 N -0.247 5.247 21 C -0.047 4.047 22 O 0.025 5.975 23 N -0.082 5.082 24 C -0.028 4.028 25 H 0.071 0.929 26 H -0.001 1.001 27 H 0.001 0.999 28 H 0.129 0.871 29 H 0.126 0.874 30 H 0.112 0.888 31 H 0.141 0.859 32 H 0.167 0.833 33 H 0.085 0.915 34 H 0.340 0.660 35 H 0.096 0.904 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.675 -23.481 2.872 25.196 hybrid contribution -0.700 0.960 0.058 1.190 sum 7.975 -22.521 2.930 24.070 Atomic orbital electron populations 1.70183 1.08384 1.27812 1.51488 1.26155 0.95706 1.04020 0.94653 0.85309 0.78736 0.77651 0.78482 1.19802 1.21360 1.17641 1.21701 0.94096 0.91362 1.50731 0.90250 1.18709 0.93710 0.92492 0.94693 1.21672 0.99359 0.89213 1.05054 1.21586 0.87711 0.86355 0.73767 1.90656 1.16678 1.87780 1.51201 1.48290 1.08350 1.04340 1.74324 1.22835 0.77453 1.03930 1.01483 1.23362 0.99516 0.82253 0.97678 1.87964 1.16231 1.32040 1.93512 1.20077 0.82628 0.85983 0.99267 0.89104 1.25148 0.96422 0.98632 0.91569 1.71833 1.16420 1.09226 1.27270 1.31763 0.93887 0.94593 0.84498 1.85309 1.39037 1.30683 1.42466 1.74699 1.15867 0.95219 1.22385 1.21986 0.98074 0.83996 0.98744 0.92886 1.00106 0.99926 0.87108 0.87414 0.88845 0.85941 0.83312 0.91517 0.66048 0.90418 0.89975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.55 13.29 21.45 0.28 -59.27 16 2 C -0.01 -0.46 5.46 84.66 0.46 0.00 16 3 Si 0.97 43.86 29.54 68.60 2.03 45.89 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.25 -10.45 7.11 99.48 0.71 -9.74 16 7 C -0.54 -30.34 9.11 25.60 0.23 -30.11 16 8 H 0.08 3.99 7.74 -2.91 -0.02 3.97 16 9 C 0.04 2.30 4.26 29.85 0.13 2.43 16 10 C -0.11 -4.47 4.01 29.85 0.12 -4.35 16 11 C 0.51 20.51 7.71 87.66 0.68 21.18 16 12 O -0.58 -29.45 15.45 -3.03 -0.05 -29.50 16 13 N -0.62 -18.48 3.02 -817.32 -2.47 -20.95 16 14 C 0.06 1.28 6.54 86.35 0.56 1.84 16 15 C 0.05 0.82 6.99 72.08 0.50 1.32 16 16 O -0.38 -8.92 10.37 -148.98 -1.54 -10.47 16 17 C 0.18 4.67 3.33 29.96 0.10 4.77 16 18 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 19 C 0.16 3.86 7.11 138.46 0.98 4.84 16 20 N -0.51 -10.87 11.55 -315.34 -3.64 -14.51 16 21 C 0.19 2.03 13.40 130.51 1.75 3.78 16 22 O 0.09 1.45 11.31 74.88 0.85 2.29 16 23 N -0.38 -8.99 12.16 -60.36 -0.73 -9.73 16 24 C 0.10 2.83 5.91 86.36 0.51 3.34 16 25 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 26 H -0.02 -1.23 8.10 -2.39 -0.02 -1.25 16 27 H -0.02 -1.11 8.10 -2.39 -0.02 -1.13 16 28 H 0.11 3.70 7.65 -2.39 -0.02 3.69 16 29 H 0.11 3.68 8.02 -2.39 -0.02 3.66 16 30 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.12 2.06 6.05 -2.39 -0.01 2.05 16 32 H 0.15 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.33 -1.35 8.06 -2.91 -0.02 -1.37 16 35 H 0.08 2.21 8.14 -2.39 -0.02 2.20 16 36 H 0.08 2.80 7.08 -2.39 -0.02 2.78 16 Total: -1.00 -86.15 311.65 1.85 -84.30 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: 1.10 Total: 2.89 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 6.03 Total: 9.04 kcal Atomic # 7 Polarization: -97.89 SS G_CDS: -6.56 Total: -104.45 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -0.75 Total: -37.67 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -86.15 1.85 -84.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327670228.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.855 kcal (2) G-P(sol) polarization free energy of solvation -86.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds