Wall clock time and date at job start Tue Mar 31 2020 05:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34650 * 126.10965 * 2 1 4 4 C 1.30959 * 108.62023 * 180.02562 * 3 2 1 5 5 N 1.38635 * 125.70054 * 180.02562 * 4 3 2 6 6 C 1.34776 * 120.00173 * 180.02562 * 5 4 3 7 7 O 1.21578 * 119.99934 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99796 * 179.97438 * 6 5 4 9 9 C 1.47585 * 134.48714 * 180.02562 * 8 6 5 10 10 C 1.53946 * 86.11303 * 155.35829 * 9 8 6 11 11 O 1.42897 * 113.74194 * 269.15036 * 10 9 8 12 12 C 1.50705 * 113.74193 * 137.95267 * 10 9 8 13 13 H 1.08000 * 119.99753 * 17.18899 * 12 10 9 14 14 C 1.37873 * 119.99893 * 197.19270 * 12 10 9 15 15 N 1.31512 * 119.99488 * 194.35249 * 14 12 10 16 16 Si 1.86797 * 120.00211 * 14.35029 * 14 12 10 17 17 H 1.48498 * 109.46923 * 180.02562 * 16 14 12 18 18 H 1.48497 * 109.47361 * 300.00177 * 16 14 12 19 19 H 1.48501 * 109.47273 * 60.00378 * 16 14 12 20 20 C 1.47807 * 134.46136 * 359.86830 * 8 6 5 21 21 O 1.34191 * 108.60102 * 0.26380 * 4 3 2 22 22 C 1.34156 * 126.11296 * 180.02562 * 2 1 3 23 23 C 1.50702 * 126.36863 * 359.97438 * 22 2 1 24 24 H 1.08997 * 109.47437 * 89.97120 * 1 2 3 25 25 H 1.09002 * 109.47048 * 209.97366 * 1 2 3 26 26 H 1.08998 * 109.47206 * 329.96604 * 1 2 3 27 27 H 0.97002 * 119.99494 * 0.02562 * 5 4 3 28 28 H 1.08992 * 113.77064 * 41.05629 * 9 8 6 29 29 H 1.08997 * 113.76476 * 269.65826 * 9 8 6 30 30 H 0.96694 * 114.00247 * 174.14979 * 11 10 9 31 31 H 0.97001 * 120.00716 * 354.86282 * 15 14 12 32 32 H 1.08994 * 113.77033 * 90.37473 * 20 8 6 33 33 H 1.09004 * 113.83092 * 318.91824 * 20 8 6 34 34 H 1.09000 * 109.47161 * 90.00432 * 23 22 2 35 35 H 1.09004 * 109.46936 * 210.00046 * 23 22 2 36 36 H 1.08999 * 109.47129 * 329.99606 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0878 0.0000 4 6 3.5496 0.6943 -0.0006 5 7 4.6595 1.5249 -0.0002 6 6 5.8984 0.9942 -0.0014 7 8 6.0426 -0.2130 -0.0023 8 7 6.9774 1.8018 -0.0016 9 6 8.4363 1.5786 -0.0032 10 6 8.5437 2.9750 -0.6423 11 8 8.5195 2.9573 -2.0710 12 6 9.6649 3.8132 -0.0841 13 1 10.4621 3.3456 0.4747 14 6 9.6728 5.1769 -0.2867 15 7 10.7669 5.8694 -0.0566 16 14 8.1297 6.0409 -0.8880 17 1 8.3981 7.4950 -1.0252 18 1 7.7327 5.4847 -2.2064 19 1 7.0316 5.8299 0.0892 20 6 7.1741 3.2667 -0.0032 21 8 3.5756 -0.6474 -0.0068 22 6 2.2977 -1.0838 -0.0005 23 6 1.8441 -2.5209 -0.0006 24 1 -0.3634 0.0005 -1.0276 25 1 -0.3633 -0.8902 0.5134 26 1 -0.3633 0.8897 0.5143 27 1 4.5444 2.4881 0.0008 28 1 8.7562 0.7693 -0.6594 29 1 8.8723 1.5171 0.9939 30 1 8.4967 3.8355 -2.4749 31 1 11.5450 5.4344 0.3259 32 1 7.2384 3.7025 0.9937 33 1 6.4883 3.8025 -0.6596 34 1 1.7344 -2.8672 -1.0283 35 1 2.5836 -3.1354 0.5129 36 1 0.8862 -2.5996 0.5136 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327728154.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:23 Heat of formation + Delta-G solvation = -2.579921 kcal Electronic energy + Delta-G solvation = -21978.346860 eV Core-core repulsion = 18466.620249 eV Total energy + Delta-G solvation = -3511.726610 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.28499 -40.24799 -38.26657 -35.23599 -34.99077 -34.36835 -32.71320 -32.35491 -29.33138 -28.94477 -26.15732 -25.52001 -24.64781 -22.14197 -21.85114 -20.09947 -19.19425 -18.25919 -17.98487 -17.47241 -17.01114 -15.87906 -15.66398 -15.40620 -15.04742 -14.32233 -14.03653 -13.71403 -13.61240 -13.39629 -13.31508 -13.14531 -12.90856 -12.44957 -12.38842 -12.17897 -12.13125 -11.41506 -11.35490 -10.90402 -10.52729 -10.49992 -10.37196 -10.35681 -9.88748 -9.57865 -9.13405 -8.66288 -8.30234 -7.95527 -6.81438 -4.55815 1.47847 1.80323 2.51533 2.87608 3.01846 3.09571 3.28023 3.38240 3.77724 4.10817 4.54762 4.71427 4.74882 4.88309 5.02423 5.13558 5.23812 5.34827 5.43475 5.51945 5.53155 5.63637 5.73473 5.76928 5.96234 6.05227 6.10934 6.16584 6.18516 6.46650 6.56318 6.87300 7.44221 7.78470 8.00594 8.12189 8.48643 8.51424 8.60950 9.20253 10.55441 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.034083 B = 0.004057 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.324409 B = 6900.617303 C = 7464.746414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.004 3.996 3 N -0.513 5.513 4 C 0.456 3.544 5 N -0.624 5.624 6 C 0.721 3.279 7 O -0.566 6.566 8 N -0.641 5.641 9 C 0.153 3.847 10 C 0.203 3.797 11 O -0.565 6.565 12 C -0.618 4.618 13 H 0.072 0.928 14 C 0.037 3.963 15 N -0.884 5.884 16 Si 1.039 2.961 17 H -0.277 1.277 18 H -0.279 1.279 19 H -0.273 1.273 20 C 0.051 3.949 21 O -0.178 6.178 22 C -0.075 4.075 23 C -0.059 4.059 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.433 0.567 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.368 0.632 31 H 0.275 0.725 32 H 0.100 0.900 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.201 -8.395 0.635 19.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.116 4.116 3 N -0.252 5.252 4 C 0.158 3.842 5 N -0.285 5.285 6 C 0.423 3.577 7 O -0.441 6.441 8 N -0.379 5.379 9 C 0.031 3.969 10 C 0.162 3.838 11 O -0.373 6.373 12 C -0.656 4.656 13 H 0.090 0.910 14 C -0.172 4.172 15 N -0.516 5.516 16 Si 0.867 3.133 17 H -0.202 1.202 18 H -0.206 1.206 19 H -0.199 1.199 20 C -0.071 4.071 21 O -0.064 6.064 22 C -0.129 4.129 23 C -0.116 4.116 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.273 0.727 28 H 0.096 0.904 29 H 0.114 0.886 30 H 0.218 0.782 31 H 0.086 0.914 32 H 0.118 0.882 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.845 -7.988 0.271 19.553 hybrid contribution 0.863 -0.882 0.482 1.325 sum -16.982 -8.870 0.753 19.173 Atomic orbital electron populations 1.20083 0.86362 1.03165 1.02761 1.21267 0.97568 0.87172 1.05599 1.70638 0.97524 1.30717 1.26329 1.20831 0.86971 0.78330 0.98029 1.41527 1.00955 1.09182 1.76827 1.15400 0.78962 0.84923 0.78367 1.90988 1.84011 1.11884 1.57232 1.49346 1.05466 1.08498 1.74546 1.23257 0.74347 0.98652 1.00607 1.20357 0.90750 0.92885 0.79853 1.86384 1.96819 1.33991 1.20104 1.22165 1.09606 0.93705 1.40137 0.90984 1.25837 1.01924 0.94569 0.94867 1.70800 1.02338 1.40865 1.37598 0.84153 0.74930 0.77562 0.76695 1.20218 1.20603 1.19866 1.24873 1.00313 0.79479 1.02469 1.84651 1.29688 1.20851 1.71161 1.22980 0.80059 0.98230 1.11671 1.20177 1.01466 0.86539 1.03447 0.90742 0.90758 0.90642 0.72682 0.90386 0.88635 0.78208 0.91421 0.88196 0.91527 0.90144 0.90471 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.21 36.01 0.37 -0.21 16 2 C 0.00 0.05 7.10 -82.79 -0.59 -0.54 16 3 N -0.51 -8.31 11.34 -10.57 -0.12 -8.43 16 4 C 0.46 8.04 8.88 -86.61 -0.77 7.27 16 5 N -0.62 -10.68 5.39 -17.47 -0.09 -10.77 16 6 C 0.72 14.41 8.72 -86.92 -0.76 13.66 16 7 O -0.57 -13.02 15.83 -16.56 -0.26 -13.28 16 8 N -0.64 -12.53 3.61 -183.91 -0.66 -13.20 16 9 C 0.15 3.09 8.23 -2.96 -0.02 3.06 16 10 C 0.20 4.40 1.07 -90.86 -0.10 4.30 16 11 O -0.56 -12.53 13.47 -35.23 -0.47 -13.01 16 12 C -0.62 -15.30 9.04 -34.44 -0.31 -15.61 16 13 H 0.07 1.92 8.06 -52.49 -0.42 1.50 16 14 C 0.04 0.92 5.44 -17.82 -0.10 0.82 16 15 N -0.88 -24.30 13.70 55.43 0.76 -23.54 16 16 Si 1.04 21.14 24.55 -169.99 -4.17 16.97 16 17 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 18 H -0.28 -5.13 5.81 56.52 0.33 -4.80 16 19 H -0.27 -4.97 6.48 56.52 0.37 -4.61 16 20 C 0.05 0.96 5.22 -2.85 -0.01 0.95 16 21 O -0.18 -3.23 9.09 -17.92 -0.16 -3.40 16 22 C -0.08 -1.04 7.38 -35.75 -0.26 -1.31 16 23 C -0.06 -0.52 10.21 36.01 0.37 -0.15 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.46 7.15 -51.93 -0.37 0.09 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.43 6.25 8.43 -40.82 -0.34 5.91 16 28 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 29 H 0.10 1.80 8.09 -51.93 -0.42 1.38 16 30 H 0.37 7.54 6.07 45.56 0.28 7.81 16 31 H 0.28 7.56 8.73 -40.82 -0.36 7.21 16 32 H 0.10 1.81 7.97 -51.93 -0.41 1.39 16 33 H 0.07 1.14 6.87 -51.93 -0.36 0.78 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.53 7.15 -51.93 -0.37 0.16 16 LS Contribution 307.09 15.07 4.63 4.63 Total: -1.00 -31.92 307.09 -6.55 -38.47 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -3.80 Total: 13.33 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: -2.19 Total: 12.24 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: -0.12 Total: -55.94 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -0.90 Total: -29.69 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.17 Total: 16.97 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.92 -6.55 -38.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327728154.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.895 kcal (2) G-P(sol) polarization free energy of solvation -31.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds