Wall clock time and date at job start Tue Mar 31 2020 05:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34650 * 126.10965 * 2 1 4 4 C 1.30959 * 108.62023 * 180.02562 * 3 2 1 5 5 N 1.38635 * 125.70054 * 180.02562 * 4 3 2 6 6 C 1.34776 * 120.00173 * 180.02562 * 5 4 3 7 7 O 1.21578 * 119.99934 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99796 * 179.97438 * 6 5 4 9 9 C 1.47585 * 134.48714 * 180.02562 * 8 6 5 10 10 C 1.53946 * 86.11303 * 155.35829 * 9 8 6 11 11 O 1.42897 * 113.74194 * 269.15036 * 10 9 8 12 12 C 1.50705 * 113.74193 * 137.95267 * 10 9 8 13 13 H 1.08000 * 119.99753 * 17.18899 * 12 10 9 14 14 C 1.37873 * 119.99893 * 197.19270 * 12 10 9 15 15 N 1.31512 * 119.99488 * 194.35249 * 14 12 10 16 16 Si 1.86797 * 120.00211 * 14.35029 * 14 12 10 17 17 H 1.48498 * 109.46923 * 180.02562 * 16 14 12 18 18 H 1.48497 * 109.47361 * 300.00177 * 16 14 12 19 19 H 1.48501 * 109.47273 * 60.00378 * 16 14 12 20 20 C 1.47807 * 134.46136 * 359.86830 * 8 6 5 21 21 O 1.34191 * 108.60102 * 0.26380 * 4 3 2 22 22 C 1.34156 * 126.11296 * 180.02562 * 2 1 3 23 23 C 1.50702 * 126.36863 * 359.97438 * 22 2 1 24 24 H 1.08997 * 109.47437 * 89.97120 * 1 2 3 25 25 H 1.09002 * 109.47048 * 209.97366 * 1 2 3 26 26 H 1.08998 * 109.47206 * 329.96604 * 1 2 3 27 27 H 0.97002 * 119.99494 * 0.02562 * 5 4 3 28 28 H 1.08992 * 113.77064 * 41.05629 * 9 8 6 29 29 H 1.08997 * 113.76476 * 269.65826 * 9 8 6 30 30 H 0.96694 * 114.00247 * 174.14979 * 11 10 9 31 31 H 0.97001 * 120.00716 * 354.86282 * 15 14 12 32 32 H 1.08994 * 113.77033 * 90.37473 * 20 8 6 33 33 H 1.09004 * 113.83092 * 318.91824 * 20 8 6 34 34 H 1.09000 * 109.47161 * 90.00432 * 23 22 2 35 35 H 1.09004 * 109.46936 * 210.00046 * 23 22 2 36 36 H 1.08999 * 109.47129 * 329.99606 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0878 0.0000 4 6 3.5496 0.6943 -0.0006 5 7 4.6595 1.5249 -0.0002 6 6 5.8984 0.9942 -0.0014 7 8 6.0426 -0.2130 -0.0023 8 7 6.9774 1.8018 -0.0016 9 6 8.4363 1.5786 -0.0032 10 6 8.5437 2.9750 -0.6423 11 8 8.5195 2.9573 -2.0710 12 6 9.6649 3.8132 -0.0841 13 1 10.4621 3.3456 0.4747 14 6 9.6728 5.1769 -0.2867 15 7 10.7669 5.8694 -0.0566 16 14 8.1297 6.0409 -0.8880 17 1 8.3981 7.4950 -1.0252 18 1 7.7327 5.4847 -2.2064 19 1 7.0316 5.8299 0.0892 20 6 7.1741 3.2667 -0.0032 21 8 3.5756 -0.6474 -0.0068 22 6 2.2977 -1.0838 -0.0005 23 6 1.8441 -2.5209 -0.0006 24 1 -0.3634 0.0005 -1.0276 25 1 -0.3633 -0.8902 0.5134 26 1 -0.3633 0.8897 0.5143 27 1 4.5444 2.4881 0.0008 28 1 8.7562 0.7693 -0.6594 29 1 8.8723 1.5171 0.9939 30 1 8.4967 3.8355 -2.4749 31 1 11.5450 5.4344 0.3259 32 1 7.2384 3.7025 0.9937 33 1 6.4883 3.8025 -0.6596 34 1 1.7344 -2.8672 -1.0283 35 1 2.5836 -3.1354 0.5129 36 1 0.8862 -2.5996 0.5136 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327728154.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:22 Heat of formation + Delta-G solvation = -29.515266 kcal Electronic energy + Delta-G solvation = -21979.514864 eV Core-core repulsion = 18466.620249 eV Total energy + Delta-G solvation = -3512.894615 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.44461 -41.80561 -39.86177 -36.55871 -36.19735 -36.06624 -34.65496 -33.37372 -30.66392 -29.99051 -27.69904 -27.03879 -25.98338 -23.35844 -23.16429 -21.63904 -20.62234 -19.99037 -19.48859 -18.92030 -18.23086 -17.54479 -16.97430 -16.79586 -16.58314 -15.98639 -15.27053 -15.01686 -14.90977 -14.61203 -14.32346 -14.19650 -14.08953 -13.94140 -13.82571 -13.13866 -12.98758 -12.94548 -12.64164 -12.50297 -12.18497 -11.96987 -11.65835 -11.63264 -11.53941 -11.28312 -10.93247 -10.42837 -9.91913 -9.10546 -8.83089 -6.59746 0.30943 0.51087 1.34259 1.43358 1.50846 1.59504 1.71966 1.93844 2.42204 2.45318 2.90490 3.32575 3.54322 3.68273 3.78340 4.01112 4.16573 4.25056 4.30434 4.42032 4.53826 4.60792 4.63850 4.69046 4.82723 4.90778 4.93954 4.96482 5.10738 5.16770 5.41765 5.57232 5.62466 5.92166 6.40814 6.43690 6.76264 6.92947 7.01571 7.26892 8.52863 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.034083 B = 0.004057 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.324409 B = 6900.617303 C = 7464.746414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.009 4.009 3 N -0.514 5.514 4 C 0.422 3.578 5 N -0.612 5.612 6 C 0.724 3.276 7 O -0.602 6.602 8 N -0.639 5.639 9 C 0.149 3.851 10 C 0.195 3.805 11 O -0.572 6.572 12 C -0.621 4.621 13 H 0.036 0.964 14 C -0.007 4.007 15 N -0.920 5.920 16 Si 1.068 2.932 17 H -0.290 1.290 18 H -0.245 1.245 19 H -0.232 1.232 20 C 0.063 3.937 21 O -0.209 6.209 22 C -0.081 4.081 23 C -0.060 4.060 24 H 0.088 0.912 25 H 0.104 0.896 26 H 0.075 0.925 27 H 0.444 0.556 28 H 0.071 0.929 29 H 0.104 0.896 30 H 0.375 0.625 31 H 0.258 0.742 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.010 -8.816 0.254 22.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.129 4.129 3 N -0.253 5.253 4 C 0.125 3.875 5 N -0.274 5.274 6 C 0.426 3.574 7 O -0.480 6.480 8 N -0.376 5.376 9 C 0.027 3.973 10 C 0.153 3.847 11 O -0.382 6.382 12 C -0.659 4.659 13 H 0.054 0.946 14 C -0.208 4.208 15 N -0.554 5.554 16 Si 0.887 3.113 17 H -0.217 1.217 18 H -0.170 1.170 19 H -0.155 1.155 20 C -0.059 4.059 21 O -0.095 6.095 22 C -0.134 4.134 23 C -0.116 4.116 24 H 0.107 0.893 25 H 0.123 0.877 26 H 0.094 0.906 27 H 0.287 0.713 28 H 0.089 0.911 29 H 0.122 0.878 30 H 0.226 0.774 31 H 0.068 0.932 32 H 0.130 0.870 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -21.683 -8.420 -0.104 23.261 hybrid contribution 2.047 -0.868 0.609 2.305 sum -19.636 -9.288 0.505 21.728 Atomic orbital electron populations 1.20283 0.82879 1.04751 1.04145 1.22071 0.99550 0.86221 1.05034 1.70643 0.97257 1.31987 1.25460 1.21043 0.87346 0.78491 1.00594 1.41177 1.00066 1.09702 1.76437 1.15386 0.79594 0.84377 0.78022 1.90957 1.84753 1.13476 1.58816 1.49182 1.05036 1.08811 1.74590 1.23251 0.75307 0.97803 1.00901 1.20296 0.91513 0.93253 0.79621 1.86370 1.96907 1.34703 1.20196 1.22252 1.09782 0.94317 1.39529 0.94588 1.27316 1.03751 0.95567 0.94153 1.70950 1.03016 1.41297 1.40175 0.83905 0.72594 0.75792 0.79042 1.21668 1.17027 1.15505 1.24785 0.98524 0.79334 1.03282 1.84637 1.32125 1.21307 1.71459 1.24039 0.78745 1.00521 1.10094 1.20477 1.02813 0.83371 1.04936 0.89317 0.87705 0.90560 0.71297 0.91053 0.87793 0.77376 0.93209 0.87037 0.88672 0.88539 0.90792 0.85718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.87 10.21 71.24 0.73 -0.15 16 2 C -0.01 -0.22 7.10 41.20 0.29 0.07 16 3 N -0.51 -15.79 11.34 -301.69 -3.42 -19.21 16 4 C 0.42 14.47 8.88 178.95 1.59 16.06 16 5 N -0.61 -20.15 5.39 -437.64 -2.36 -22.51 16 6 C 0.72 28.31 8.72 179.05 1.56 29.87 16 7 O -0.60 -27.77 15.83 16.94 0.27 -27.50 16 8 N -0.64 -24.09 3.61 -857.85 -3.10 -27.19 16 9 C 0.15 6.00 8.23 86.49 0.71 6.71 16 10 C 0.19 8.22 1.07 -10.89 -0.01 8.20 16 11 O -0.57 -24.51 13.47 -148.98 -2.01 -26.52 16 12 C -0.62 -31.08 9.04 25.60 0.23 -30.85 16 13 H 0.04 2.00 8.06 -2.91 -0.02 1.98 16 14 C -0.01 -0.34 5.44 84.65 0.46 0.12 16 15 N -0.92 -51.99 13.70 21.45 0.29 -51.70 16 16 Si 1.07 40.17 24.55 68.60 1.68 41.85 16 17 H -0.29 -11.65 7.11 99.48 0.71 -10.94 16 18 H -0.25 -7.89 5.81 99.48 0.58 -7.31 16 19 H -0.23 -7.21 6.48 99.48 0.64 -6.56 16 20 C 0.06 2.18 5.22 86.43 0.45 2.63 16 21 O -0.21 -7.47 9.09 12.10 0.11 -7.36 16 22 C -0.08 -2.09 7.38 24.75 0.18 -1.91 16 23 C -0.06 -0.86 10.21 71.24 0.73 -0.14 16 24 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.10 0.79 7.15 -2.39 -0.02 0.77 16 26 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.44 11.86 8.43 -92.71 -0.78 11.08 16 28 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 29 H 0.10 3.94 8.09 -2.39 -0.02 3.92 16 30 H 0.38 14.48 6.07 -74.06 -0.45 14.03 16 31 H 0.26 14.94 8.73 -92.71 -0.81 14.13 16 32 H 0.11 3.67 7.97 -2.39 -0.02 3.65 16 33 H 0.10 2.81 6.87 -2.38 -0.02 2.79 16 34 H 0.10 1.12 8.14 -2.39 -0.02 1.11 16 35 H 0.07 1.14 8.14 -2.38 -0.02 1.13 16 36 H 0.12 0.90 7.15 -2.39 -0.02 0.88 16 Total: -1.00 -71.98 307.09 -1.92 -73.91 By element: Atomic # 1 Polarization: 35.91 SS G_CDS: -0.32 Total: 35.59 kcal Atomic # 6 Polarization: 23.72 SS G_CDS: 6.92 Total: 30.64 kcal Atomic # 7 Polarization: -112.01 SS G_CDS: -8.59 Total: -120.60 kcal Atomic # 8 Polarization: -59.76 SS G_CDS: -1.63 Total: -61.39 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 1.68 Total: 41.85 kcal Total: -71.98 -1.92 -73.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327728154.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.392 kcal (2) G-P(sol) polarization free energy of solvation -71.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds