Wall clock time and date at job start Tue Mar 31 2020 05:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30176 * 126.80680 * 2 1 4 4 O 1.20892 * 111.74319 * 180.30220 * 3 2 1 5 5 C 1.34299 * 111.62742 * 359.72766 * 4 3 2 6 6 C 1.50698 * 126.81823 * 180.02562 * 5 4 3 7 7 C 1.35848 * 106.35533 * 359.97438 * 5 4 3 8 8 N 1.40784 * 128.05387 * 179.97438 * 7 5 4 9 9 C 1.34776 * 119.99845 * 126.97338 * 8 7 5 10 10 O 1.21606 * 119.99889 * 0.90102 * 9 8 7 11 11 N 1.34774 * 119.99871 * 180.90800 * 9 8 7 12 12 C 1.47070 * 136.05451 * 179.97438 * 11 9 8 13 13 C 1.53506 * 87.98212 * 152.84400 * 12 11 9 14 14 O 1.42892 * 114.20930 * 272.48381 * 13 12 11 15 15 C 1.50700 * 114.20237 * 139.65462 * 13 12 11 16 16 H 1.08001 * 120.00553 * 359.97438 * 15 13 12 17 17 C 1.37876 * 119.99742 * 180.02562 * 15 13 12 18 18 N 1.31521 * 120.00203 * 359.97438 * 17 15 13 19 19 Si 1.86805 * 120.00188 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47128 * 59.99485 * 19 17 15 21 21 H 1.48496 * 109.47134 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46914 * 299.99801 * 19 17 15 23 23 C 1.47063 * 136.05868 * 359.94541 * 11 9 8 24 24 H 1.08988 * 109.47195 * 277.85029 * 1 2 3 25 25 H 1.09003 * 109.46829 * 37.85502 * 1 2 3 26 26 H 1.09002 * 109.46788 * 157.84505 * 1 2 3 27 27 H 1.08997 * 109.47243 * 269.97399 * 6 5 4 28 28 H 1.09002 * 109.47282 * 29.97962 * 6 5 4 29 29 H 1.09003 * 109.46520 * 149.97745 * 6 5 4 30 30 H 0.96997 * 120.00270 * 306.96922 * 8 7 5 31 31 H 1.08996 * 113.47003 * 267.62099 * 12 11 9 32 32 H 1.09002 * 113.46740 * 38.07154 * 12 11 9 33 33 H 0.96696 * 114.00449 * 179.97438 * 14 13 12 34 34 H 0.97000 * 120.00229 * 179.97438 * 18 17 15 35 35 H 1.09004 * 113.46825 * 321.93488 * 23 11 9 36 36 H 1.09002 * 113.46948 * 92.37532 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4543 0.7281 -0.0059 5 6 3.6078 -0.6061 -0.0049 6 6 4.9095 -1.3654 -0.0103 7 6 2.3566 -1.1351 0.0033 8 7 1.9891 -2.4941 0.0070 9 6 1.1412 -2.9603 0.9452 10 8 0.6808 -2.2038 1.7785 11 7 0.8036 -4.2651 0.9598 12 6 -0.0551 -5.1275 1.7855 13 6 -0.2312 -6.0340 0.5593 14 8 -1.3075 -5.6541 -0.3004 15 6 -0.2061 -7.5080 0.8720 16 1 -0.0720 -7.8419 1.8903 17 6 -0.3532 -8.4303 -0.1422 18 7 -0.5160 -8.0238 -1.3824 19 14 -0.3228 -10.2575 0.2453 20 1 -1.4234 -10.5820 1.1879 21 1 -0.4998 -11.0325 -1.0089 22 1 0.9798 -10.6104 0.8650 23 6 1.1314 -5.4527 0.1569 24 1 -0.3633 0.1403 1.0179 25 1 -0.3633 0.8114 -0.6307 26 1 -0.3633 -0.9518 -0.3876 27 1 5.2180 -1.5502 -1.0393 28 1 5.6745 -0.7788 0.4985 29 1 4.7776 -2.3163 0.5059 30 1 2.3460 -3.0950 -0.6657 31 1 0.4748 -5.6079 2.6079 32 1 -0.9785 -4.6436 2.1037 33 1 -1.4155 -6.2268 -1.0720 34 1 -0.6192 -8.6728 -2.0959 35 1 1.2171 -5.2454 -0.9099 36 1 1.9772 -6.0198 0.5458 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328100555.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:28 Heat of formation + Delta-G solvation = 24.710560 kcal Electronic energy + Delta-G solvation = -22252.510234 eV Core-core repulsion = 18741.967027 eV Total energy + Delta-G solvation = -3510.543206 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.83295 -39.94289 -38.04395 -35.39216 -34.10788 -33.79895 -32.27808 -32.20770 -28.77473 -28.46828 -27.38676 -25.41324 -25.17699 -22.67620 -20.65027 -20.34142 -19.08384 -17.88500 -17.60811 -17.45274 -16.87037 -15.88409 -15.24916 -15.08991 -14.82223 -14.14196 -14.05729 -13.49911 -13.42209 -13.08575 -13.02505 -12.82461 -12.70274 -12.45501 -12.31119 -12.09768 -11.61839 -11.25163 -11.11187 -11.08869 -10.56301 -10.34935 -10.25517 -9.98029 -9.52271 -9.38230 -8.85454 -8.63278 -8.47443 -7.87551 -6.47093 -4.57691 1.42647 2.22266 2.64677 3.11679 3.18159 3.20110 3.25992 3.58979 4.09977 4.18934 4.46552 4.48174 4.77567 5.01764 5.22307 5.25906 5.40520 5.48121 5.68217 5.73317 5.77855 5.82026 5.92141 6.05329 6.26757 6.29837 6.35059 6.46168 6.57521 6.72144 7.00659 7.44662 7.56571 7.73302 8.32123 8.45486 8.52561 8.95263 9.14270 9.42016 10.59600 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.032504 B = 0.004040 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.217535 B = 6929.458860 C = 7268.743408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.039 3.961 3 N -0.365 5.365 4 O 0.099 5.901 5 C -0.058 4.058 6 C -0.067 4.067 7 C 0.064 3.936 8 N -0.661 5.661 9 C 0.732 3.268 10 O -0.589 6.589 11 N -0.652 5.652 12 C 0.130 3.870 13 C 0.242 3.758 14 O -0.570 6.570 15 C -0.535 4.535 16 H 0.073 0.927 17 C 0.073 3.927 18 N -0.899 5.899 19 Si 0.910 3.090 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.273 1.273 23 C 0.070 3.930 24 H 0.085 0.915 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.408 0.592 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.394 0.606 34 H 0.275 0.725 35 H 0.061 0.939 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.400 7.154 -1.028 11.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.122 4.122 3 N -0.074 5.074 4 O 0.037 5.963 5 C -0.124 4.124 6 C -0.125 4.125 7 C -0.035 4.035 8 N -0.314 5.314 9 C 0.436 3.564 10 O -0.467 6.467 11 N -0.389 5.389 12 C 0.007 3.993 13 C 0.200 3.800 14 O -0.383 6.383 15 C -0.573 4.573 16 H 0.091 0.909 17 C -0.130 4.130 18 N -0.539 5.539 19 Si 0.736 3.264 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.053 4.053 24 H 0.103 0.897 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.244 0.756 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.250 0.750 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.780 9.596 -0.156 12.354 hybrid contribution 0.325 -2.514 -0.695 2.628 sum 8.105 7.082 -0.851 10.797 Atomic orbital electron populations 1.20082 0.85540 1.03019 1.03581 1.23532 0.99242 0.88047 1.01414 1.73781 0.89195 1.23388 1.20993 1.84835 1.21466 1.21311 1.68669 1.24065 0.97552 0.84354 1.06462 1.20261 0.89786 0.98604 1.03810 1.17679 0.90905 0.85666 1.09235 1.41675 1.50613 1.05595 1.33565 1.15184 0.78984 0.81251 0.80989 1.90891 1.58696 1.55912 1.41218 1.48770 1.49851 1.03955 1.36283 1.23247 0.92477 0.87678 0.95864 1.19511 0.83030 0.91090 0.86372 1.86051 1.51779 1.59138 1.41381 1.21389 1.51231 0.89576 0.95098 0.90891 1.25073 0.92998 1.00284 0.94599 1.69251 1.49124 1.35671 0.99865 0.86357 0.79011 0.83055 0.77937 1.19768 1.20975 1.19855 1.24232 1.03207 0.82590 0.95241 0.89657 0.91131 0.90429 0.89582 0.89713 0.89333 0.75553 0.89739 0.91438 0.74960 0.91471 0.92057 0.90130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.02 9.08 36.01 0.33 -0.69 16 2 C 0.04 0.65 6.96 -81.94 -0.57 0.08 16 3 N -0.37 -5.96 12.06 33.56 0.40 -5.55 16 4 O 0.10 1.43 11.20 16.49 0.18 1.61 16 5 C -0.06 -0.76 7.51 -35.17 -0.26 -1.02 16 6 C -0.07 -0.57 10.45 36.00 0.38 -0.20 16 7 C 0.06 1.02 6.36 -83.24 -0.53 0.49 16 8 N -0.66 -10.69 5.48 -13.99 -0.08 -10.77 16 9 C 0.73 14.59 8.37 -86.92 -0.73 13.87 16 10 O -0.59 -13.41 15.51 5.27 0.08 -13.32 16 11 N -0.65 -13.11 3.69 -190.97 -0.70 -13.81 16 12 C 0.13 2.71 8.03 -8.50 -0.07 2.64 16 13 C 0.24 5.51 1.58 -91.24 -0.14 5.37 16 14 O -0.57 -14.16 13.54 -35.23 -0.48 -14.63 16 15 C -0.53 -12.76 8.69 -34.44 -0.30 -13.06 16 16 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 17 C 0.07 1.74 5.40 -17.82 -0.10 1.64 16 18 N -0.90 -21.82 11.01 55.43 0.61 -21.20 16 19 Si 0.91 18.64 29.54 -169.99 -5.02 13.62 16 20 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 23 C 0.07 1.40 7.70 -8.49 -0.07 1.33 16 24 H 0.08 1.40 8.09 -51.94 -0.42 0.98 16 25 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.08 1.30 7.90 -51.93 -0.41 0.89 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.41 5.65 8.54 -40.82 -0.35 5.30 16 31 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 32 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.39 9.89 6.33 45.56 0.29 10.18 16 34 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.08 1.51 8.10 -51.93 -0.42 1.09 16 LS Contribution 315.53 15.07 4.75 4.75 Total: -1.00 -28.64 315.53 -6.12 -34.75 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -3.81 Total: 14.10 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: -2.06 Total: 10.46 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: 0.23 Total: -51.34 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.21 Total: -26.34 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.02 Total: 13.62 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.64 -6.12 -34.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328100555.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.464 kcal (2) G-P(sol) polarization free energy of solvation -28.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds