Wall clock time and date at job start Tue Mar 31 2020 05:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30176 * 126.80680 * 2 1 4 4 O 1.20892 * 111.74319 * 180.30220 * 3 2 1 5 5 C 1.34299 * 111.62742 * 359.72766 * 4 3 2 6 6 C 1.50698 * 126.81823 * 180.02562 * 5 4 3 7 7 C 1.35848 * 106.35533 * 359.97438 * 5 4 3 8 8 N 1.40784 * 128.05387 * 179.97438 * 7 5 4 9 9 C 1.34776 * 119.99845 * 126.97338 * 8 7 5 10 10 O 1.21606 * 119.99889 * 0.90102 * 9 8 7 11 11 N 1.34774 * 119.99871 * 180.90800 * 9 8 7 12 12 C 1.47070 * 136.05451 * 179.97438 * 11 9 8 13 13 C 1.53506 * 87.98212 * 152.84400 * 12 11 9 14 14 O 1.42892 * 114.20930 * 272.48381 * 13 12 11 15 15 C 1.50700 * 114.20237 * 139.65462 * 13 12 11 16 16 H 1.08001 * 120.00553 * 359.97438 * 15 13 12 17 17 C 1.37876 * 119.99742 * 180.02562 * 15 13 12 18 18 N 1.31521 * 120.00203 * 359.97438 * 17 15 13 19 19 Si 1.86805 * 120.00188 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47128 * 59.99485 * 19 17 15 21 21 H 1.48496 * 109.47134 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46914 * 299.99801 * 19 17 15 23 23 C 1.47063 * 136.05868 * 359.94541 * 11 9 8 24 24 H 1.08988 * 109.47195 * 277.85029 * 1 2 3 25 25 H 1.09003 * 109.46829 * 37.85502 * 1 2 3 26 26 H 1.09002 * 109.46788 * 157.84505 * 1 2 3 27 27 H 1.08997 * 109.47243 * 269.97399 * 6 5 4 28 28 H 1.09002 * 109.47282 * 29.97962 * 6 5 4 29 29 H 1.09003 * 109.46520 * 149.97745 * 6 5 4 30 30 H 0.96997 * 120.00270 * 306.96922 * 8 7 5 31 31 H 1.08996 * 113.47003 * 267.62099 * 12 11 9 32 32 H 1.09002 * 113.46740 * 38.07154 * 12 11 9 33 33 H 0.96696 * 114.00449 * 179.97438 * 14 13 12 34 34 H 0.97000 * 120.00229 * 179.97438 * 18 17 15 35 35 H 1.09004 * 113.46825 * 321.93488 * 23 11 9 36 36 H 1.09002 * 113.46948 * 92.37532 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4543 0.7281 -0.0059 5 6 3.6078 -0.6061 -0.0049 6 6 4.9095 -1.3654 -0.0103 7 6 2.3566 -1.1351 0.0033 8 7 1.9891 -2.4941 0.0070 9 6 1.1412 -2.9603 0.9452 10 8 0.6808 -2.2038 1.7785 11 7 0.8036 -4.2651 0.9598 12 6 -0.0551 -5.1275 1.7855 13 6 -0.2312 -6.0340 0.5593 14 8 -1.3075 -5.6541 -0.3004 15 6 -0.2061 -7.5080 0.8720 16 1 -0.0720 -7.8419 1.8903 17 6 -0.3532 -8.4303 -0.1422 18 7 -0.5160 -8.0238 -1.3824 19 14 -0.3228 -10.2575 0.2453 20 1 -1.4234 -10.5820 1.1879 21 1 -0.4998 -11.0325 -1.0089 22 1 0.9798 -10.6104 0.8650 23 6 1.1314 -5.4527 0.1569 24 1 -0.3633 0.1403 1.0179 25 1 -0.3633 0.8114 -0.6307 26 1 -0.3633 -0.9518 -0.3876 27 1 5.2180 -1.5502 -1.0393 28 1 5.6745 -0.7788 0.4985 29 1 4.7776 -2.3163 0.5059 30 1 2.3460 -3.0950 -0.6657 31 1 0.4748 -5.6079 2.6079 32 1 -0.9785 -4.6436 2.1037 33 1 -1.4155 -6.2268 -1.0720 34 1 -0.6192 -8.6728 -2.0959 35 1 1.2171 -5.2454 -0.9099 36 1 1.9772 -6.0198 0.5458 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328100555.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:28 Heat of formation + Delta-G solvation = 4.055618 kcal Electronic energy + Delta-G solvation = -22253.405899 eV Core-core repulsion = 18741.967027 eV Total energy + Delta-G solvation = -3511.438872 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -46.03074 -41.52705 -39.63918 -36.77070 -35.88300 -34.99918 -34.10327 -33.41055 -30.34372 -29.71158 -28.44597 -27.10950 -26.80659 -24.01105 -22.16714 -21.56158 -20.63335 -19.53091 -18.98520 -18.71205 -18.43795 -17.26503 -16.95983 -16.60199 -16.37271 -15.79095 -15.26917 -15.07053 -14.47566 -14.44000 -14.39670 -14.12781 -13.94396 -13.77316 -13.56530 -13.37923 -13.36195 -12.77397 -12.75044 -12.44057 -12.21309 -12.15966 -11.73318 -11.44762 -11.10915 -10.72939 -10.65702 -10.24512 -9.93254 -9.42743 -8.25799 -6.42472 0.31958 0.93274 1.31696 1.50834 1.54033 1.60450 2.01779 2.14908 2.42453 2.78269 2.98430 3.23563 3.39756 3.73390 3.91401 4.13385 4.24936 4.33918 4.45443 4.51316 4.61900 4.63737 4.69169 4.71419 4.80578 4.86447 4.91867 5.01353 5.11999 5.25051 5.42694 5.74908 5.91515 6.07226 6.63735 6.96602 7.16871 7.30852 7.43713 7.51169 8.80072 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.032504 B = 0.004040 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.217535 B = 6929.458860 C = 7268.743408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.017 3.983 3 N -0.381 5.381 4 O 0.104 5.896 5 C -0.026 4.026 6 C -0.069 4.069 7 C 0.026 3.974 8 N -0.643 5.643 9 C 0.730 3.270 10 O -0.621 6.621 11 N -0.653 5.653 12 C 0.131 3.869 13 C 0.220 3.780 14 O -0.586 6.586 15 C -0.552 4.552 16 H 0.076 0.924 17 C 0.035 3.965 18 N -0.917 5.917 19 Si 0.968 3.032 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.266 1.266 23 C 0.088 3.912 24 H 0.072 0.928 25 H 0.091 0.909 26 H 0.061 0.939 27 H 0.115 0.885 28 H 0.108 0.892 29 H 0.091 0.909 30 H 0.420 0.580 31 H 0.105 0.895 32 H 0.053 0.947 33 H 0.389 0.611 34 H 0.276 0.724 35 H 0.063 0.937 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.496 6.659 -1.217 12.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.143 4.143 3 N -0.089 5.089 4 O 0.043 5.957 5 C -0.093 4.093 6 C -0.125 4.125 7 C -0.073 4.073 8 N -0.297 5.297 9 C 0.434 3.566 10 O -0.502 6.502 11 N -0.389 5.389 12 C 0.008 3.992 13 C 0.178 3.822 14 O -0.399 6.399 15 C -0.590 4.590 16 H 0.094 0.906 17 C -0.166 4.166 18 N -0.558 5.558 19 Si 0.794 3.206 20 H -0.201 1.201 21 H -0.210 1.210 22 H -0.190 1.190 23 C -0.035 4.035 24 H 0.090 0.910 25 H 0.110 0.890 26 H 0.080 0.920 27 H 0.133 0.867 28 H 0.126 0.874 29 H 0.110 0.890 30 H 0.258 0.742 31 H 0.123 0.877 32 H 0.071 0.929 33 H 0.245 0.755 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.903 9.115 -0.365 13.464 hybrid contribution -0.289 -2.303 -0.639 2.407 sum 9.615 6.812 -1.004 11.826 Atomic orbital electron populations 1.19988 0.85634 1.02917 1.03087 1.23754 0.99710 0.88797 1.02042 1.73763 0.89736 1.23529 1.21860 1.84820 1.20741 1.22100 1.68066 1.24827 0.98392 0.83610 1.02484 1.20574 0.87754 0.98225 1.05988 1.17865 0.92004 0.85184 1.12282 1.41329 1.49593 1.06026 1.32740 1.15307 0.79265 0.80759 0.81302 1.90866 1.60038 1.56545 1.42775 1.48691 1.49862 1.04193 1.36199 1.23254 0.92519 0.87548 0.95901 1.19796 0.83906 0.91353 0.87134 1.86040 1.53116 1.59250 1.41525 1.21631 1.51622 0.90312 0.95407 0.90586 1.25722 0.92675 1.03691 0.94465 1.69316 1.49442 1.36653 1.00416 0.85441 0.78982 0.78766 0.77459 1.20139 1.21000 1.19049 1.24023 1.01974 0.82127 0.95374 0.90952 0.89040 0.92004 0.86725 0.87370 0.89040 0.74156 0.87745 0.92886 0.75503 0.91375 0.91863 0.88504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.88 9.08 71.24 0.65 -1.23 16 2 C 0.02 0.57 6.96 43.68 0.30 0.88 16 3 N -0.38 -12.09 12.06 -48.97 -0.59 -12.68 16 4 O 0.10 2.82 11.20 69.19 0.78 3.59 16 5 C -0.03 -0.63 7.51 25.13 0.19 -0.44 16 6 C -0.07 -0.90 10.45 71.24 0.74 -0.15 16 7 C 0.03 0.78 6.36 38.02 0.24 1.02 16 8 N -0.64 -20.12 5.48 -316.42 -1.73 -21.86 16 9 C 0.73 28.83 8.37 179.06 1.50 30.33 16 10 O -0.62 -28.54 15.51 -4.05 -0.06 -28.61 16 11 N -0.65 -25.87 3.69 -876.85 -3.23 -29.10 16 12 C 0.13 5.43 8.03 83.18 0.67 6.10 16 13 C 0.22 9.95 1.58 -11.20 -0.02 9.93 16 14 O -0.59 -29.49 13.54 -148.98 -2.02 -31.50 16 15 C -0.55 -25.94 8.69 25.60 0.22 -25.71 16 16 H 0.08 3.44 7.81 -2.91 -0.02 3.41 16 17 C 0.04 1.63 5.40 84.65 0.46 2.09 16 18 N -0.92 -44.15 11.01 21.45 0.24 -43.91 16 19 Si 0.97 37.40 29.54 68.60 2.03 39.42 16 20 H -0.28 -10.74 7.11 99.48 0.71 -10.03 16 21 H -0.28 -10.91 7.11 99.48 0.71 -10.21 16 22 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 23 C 0.09 3.39 7.70 83.19 0.64 4.03 16 24 H 0.07 2.47 8.09 -2.39 -0.02 2.45 16 25 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.06 2.13 7.90 -2.39 -0.02 2.11 16 27 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.42 10.93 8.54 -92.71 -0.79 10.14 16 31 H 0.10 3.87 8.10 -2.39 -0.02 3.85 16 32 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.39 19.86 6.33 -74.06 -0.47 19.40 16 34 H 0.28 12.67 8.31 -92.71 -0.77 11.90 16 35 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 36 H 0.10 3.43 8.10 -2.39 -0.02 3.41 16 Total: -1.00 -61.19 315.53 0.87 -60.32 By element: Atomic # 1 Polarization: 37.62 SS G_CDS: -0.13 Total: 37.49 kcal Atomic # 6 Polarization: 21.24 SS G_CDS: 5.59 Total: 26.83 kcal Atomic # 7 Polarization: -102.23 SS G_CDS: -5.32 Total: -107.55 kcal Atomic # 8 Polarization: -55.21 SS G_CDS: -1.31 Total: -56.52 kcal Atomic # 14 Polarization: 37.40 SS G_CDS: 2.03 Total: 39.42 kcal Total: -61.19 0.87 -60.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328100555.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.375 kcal (2) G-P(sol) polarization free energy of solvation -61.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds