Wall clock time and date at job start Tue Mar 31 2020 05:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 120.00325 * 2 1 4 4 H 1.48504 * 109.47348 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47309 * 299.99907 * 3 2 1 6 6 H 1.48502 * 109.47205 * 60.00352 * 3 2 1 7 7 C 1.37883 * 119.99536 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99591 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00307 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47085 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.46623 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00734 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99605 * 180.02562 * 11 10 9 14 14 C 1.47148 * 120.98247 * 5.70834 * 13 11 10 15 15 C 1.53296 * 108.38681 * 230.56140 * 14 13 11 16 16 O 1.42965 * 109.21905 * 307.69861 * 15 14 13 17 17 C 1.42958 * 114.16704 * 62.58275 * 16 15 14 18 18 C 1.47151 * 120.98084 * 185.73592 * 13 11 10 19 19 H 1.08994 * 109.71128 * 249.18020 * 18 13 11 20 20 C 1.50701 * 109.68325 * 9.71845 * 18 13 11 21 21 N 1.34491 * 126.28839 * 244.08481 * 20 18 13 22 22 C 1.31131 * 105.61869 * 180.02562 * 21 20 18 23 23 O 1.33642 * 106.89211 * 0.02562 * 22 21 20 24 24 N 1.21297 * 109.81683 * 359.97438 * 23 22 21 25 25 H 0.97005 * 119.99889 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47051 * 59.99992 * 9 7 2 27 27 H 1.08999 * 109.47208 * 300.00269 * 9 7 2 28 28 H 1.08996 * 109.47015 * 60.00167 * 10 9 7 29 29 H 1.08999 * 109.46838 * 299.99908 * 10 9 7 30 30 H 1.09001 * 109.68299 * 110.83552 * 14 13 11 31 31 H 1.09007 * 109.68439 * 350.28395 * 14 13 11 32 32 H 1.08998 * 109.51397 * 187.77534 * 15 14 13 33 33 H 1.09001 * 109.55494 * 67.64990 * 15 14 13 34 34 H 1.08997 * 109.51162 * 177.49082 * 17 16 15 35 35 H 1.09003 * 109.55316 * 57.36808 * 17 16 15 36 36 H 1.08000 * 126.55370 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4915 -4.9672 -0.0012 12 8 0.2788 -4.9672 -0.0011 13 7 2.1654 -6.1345 -0.0008 14 6 3.6312 -6.1629 0.1258 15 6 4.1966 -7.0391 -0.9978 16 8 3.5336 -8.3056 -0.9859 17 6 2.1284 -8.2331 -1.2388 18 6 1.4571 -7.4181 -0.1274 19 1 1.5145 -7.9641 0.8141 20 6 0.0139 -7.1685 -0.4823 21 7 -1.0558 -7.4717 0.2745 22 6 -2.0996 -7.0833 -0.4177 23 8 -1.6372 -6.5636 -1.5588 24 7 -0.4258 -6.6217 -1.5760 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8896 28 1 2.8718 -3.6045 0.8894 29 1 2.8718 -3.6044 -0.8905 30 1 3.9081 -6.5823 1.0930 31 1 4.0271 -5.1512 0.0369 32 1 5.2654 -7.1861 -0.8421 33 1 4.0325 -6.5512 -1.9587 34 1 1.7093 -9.2391 -1.2564 35 1 1.9553 -7.7497 -2.2002 36 1 -3.1349 -7.1674 -0.1222 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330127650.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:22 Heat of formation + Delta-G solvation = 9.974215 kcal Electronic energy + Delta-G solvation = -22753.638637 eV Core-core repulsion = 19242.456415 eV Total energy + Delta-G solvation = -3511.182222 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.25675 -40.40842 -38.25321 -35.75656 -34.65978 -33.65364 -32.81880 -31.04318 -30.75063 -28.11560 -25.84368 -25.04112 -23.92938 -22.64754 -22.50250 -20.82364 -18.98864 -17.94850 -17.70849 -16.99095 -16.52962 -16.21792 -15.79895 -15.57399 -15.35421 -14.90277 -14.82596 -14.43486 -13.84316 -13.44705 -13.00858 -12.49569 -12.24648 -12.22985 -12.11563 -11.61126 -11.54715 -11.18879 -11.08425 -10.99031 -10.80968 -10.61661 -10.40856 -10.21242 -10.03938 -9.61811 -9.15262 -8.75663 -8.59202 -8.36905 -6.00741 -4.05566 1.55486 2.37628 3.00018 3.08834 3.28983 3.29507 3.36651 3.39715 3.42879 3.85663 4.28304 4.42934 4.56960 4.72566 4.83352 4.94507 5.02963 5.23493 5.29845 5.33205 5.34489 5.54597 5.58712 5.73962 5.91042 6.07858 6.09218 6.23894 6.37725 6.75777 6.78759 7.49224 7.68461 7.78452 8.00774 8.30932 8.47839 8.53469 9.02315 9.58337 11.10294 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.018549 B = 0.005257 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.167228 B = 5325.380671 C = 6556.773450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.040 3.960 10 C -0.124 4.124 11 C 0.518 3.482 12 O -0.520 6.520 13 N -0.627 5.627 14 C 0.077 3.923 15 C 0.043 3.957 16 O -0.374 6.374 17 C 0.060 3.940 18 C 0.205 3.795 19 H 0.105 0.895 20 C 0.192 3.808 21 N -0.483 5.483 22 C 0.157 3.843 23 O 0.086 5.914 24 N -0.361 5.361 25 H 0.261 0.739 26 H 0.023 0.977 27 H 0.022 0.978 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.061 0.939 34 H 0.108 0.892 35 H 0.066 0.934 36 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.772 -17.968 -1.577 18.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.566 4.566 8 H 0.075 0.925 9 C 0.002 3.998 10 C -0.164 4.164 11 C 0.310 3.690 12 O -0.392 6.392 13 N -0.366 5.366 14 C -0.046 4.046 15 C -0.035 4.035 16 O -0.292 6.292 17 C -0.018 4.018 18 C 0.100 3.900 19 H 0.123 0.877 20 C -0.080 4.080 21 N -0.218 5.218 22 C -0.084 4.084 23 O 0.025 5.975 24 N -0.068 5.068 25 H 0.070 0.930 26 H 0.041 0.959 27 H 0.040 0.960 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.124 0.876 32 H 0.128 0.872 33 H 0.079 0.921 34 H 0.126 0.874 35 H 0.084 0.916 36 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 3.819 -17.875 -1.821 18.369 hybrid contribution -0.048 1.352 0.240 1.374 sum 3.772 -16.523 -1.581 17.022 Atomic orbital electron populations 1.70009 1.06102 1.26539 1.50106 1.25027 0.94827 0.99290 0.95196 0.86521 0.79987 0.83737 0.77637 1.19716 1.20959 1.20963 1.21222 0.92921 0.90899 1.51531 0.92545 1.18888 0.93073 0.89315 0.98511 1.21890 1.00781 0.91396 1.02342 1.21678 0.88435 0.85220 0.73712 1.90613 1.14627 1.85667 1.48324 1.48514 1.07251 1.04726 1.76114 1.22466 0.79414 1.02903 0.99771 1.23094 0.97566 0.84531 0.98281 1.87972 1.19528 1.29134 1.92517 1.22932 0.81587 1.00885 0.96427 1.19801 0.83074 0.86475 1.00699 0.87684 1.24647 0.97053 0.97832 0.88441 1.71643 0.97604 1.23538 1.28987 1.30112 1.01862 0.93103 0.83312 1.85232 1.15714 1.58703 1.37842 1.74466 0.91141 1.17327 1.23915 0.92961 0.95886 0.95981 0.90097 0.90108 0.90299 0.87554 0.87180 0.92090 0.87397 0.91610 0.72810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.52 13.29 55.43 0.74 -26.78 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.53 -14.98 9.11 -34.44 -0.31 -15.30 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.04 1.08 4.26 -27.88 -0.12 0.96 16 10 C -0.12 -2.56 4.01 -27.88 -0.11 -2.67 16 11 C 0.52 10.37 7.49 -10.98 -0.08 10.29 16 12 O -0.52 -12.24 12.05 5.47 0.07 -12.17 16 13 N -0.63 -9.72 3.02 -166.06 -0.50 -10.22 16 14 C 0.08 0.87 6.55 -3.53 -0.02 0.84 16 15 C 0.04 0.42 6.99 37.31 0.26 0.68 16 16 O -0.37 -4.28 10.74 -35.23 -0.38 -4.66 16 17 C 0.06 0.72 6.27 37.31 0.23 0.95 16 18 C 0.20 2.96 3.62 -68.57 -0.25 2.71 16 19 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 20 C 0.19 3.22 4.28 -156.37 -0.67 2.55 16 21 N -0.48 -7.70 11.54 -13.72 -0.16 -7.86 16 22 C 0.16 2.03 13.40 51.99 0.70 2.73 16 23 O 0.09 1.37 11.31 18.01 0.20 1.57 16 24 N -0.36 -6.48 10.49 30.87 0.32 -6.16 16 25 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 26 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 27 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 28 H 0.08 1.51 7.79 -51.93 -0.40 1.10 16 29 H 0.08 1.52 7.89 -51.93 -0.41 1.11 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.11 1.12 6.04 -51.92 -0.31 0.81 16 32 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 0.85 8.04 -51.93 -0.42 0.43 16 36 H 0.26 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 305.50 15.07 4.60 4.60 Total: -1.00 -37.33 305.50 -5.06 -42.40 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -4.46 Total: -2.72 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -0.47 Total: 5.35 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: 0.40 Total: -51.02 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.11 Total: -15.26 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -37.33 -5.06 -42.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330127650.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.370 kcal (2) G-P(sol) polarization free energy of solvation -37.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds