Wall clock time and date at job start Tue Mar 31 2020 06:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47527 * 2 1 4 4 C 1.52997 * 109.47032 * 239.99786 * 2 1 3 5 5 F 1.39898 * 109.47317 * 60.00263 * 4 2 1 6 6 N 1.46499 * 109.47000 * 119.99994 * 2 1 3 7 7 C 1.34776 * 120.00532 * 299.99847 * 6 2 1 8 8 O 1.21596 * 119.99483 * 0.02562 * 7 6 2 9 9 C 1.47529 * 120.00576 * 179.97438 * 7 6 2 10 10 C 1.39668 * 120.19410 * 0.02562 * 9 7 6 11 11 C 1.37835 * 119.91853 * 179.97438 * 10 9 7 12 12 C 1.38573 * 120.31903 * 0.02562 * 11 10 9 13 13 C 1.38022 * 120.40696 * 0.02562 * 12 11 10 14 14 C 1.38831 * 120.06839 * 359.95623 * 13 12 11 15 15 O 1.35527 * 120.16025 * 180.02562 * 14 13 12 16 16 C 1.34817 * 116.99627 * 354.39561 * 15 14 13 17 17 H 1.07998 * 120.00286 * 5.06815 * 16 15 14 18 18 C 1.38705 * 119.99676 * 185.06799 * 16 15 14 19 19 N 1.31514 * 119.99991 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99619 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47413 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47271 * 120.00166 * 20 18 16 23 23 H 1.48507 * 109.46838 * 239.99679 * 20 18 16 24 24 H 1.09000 * 109.47286 * 300.00007 * 1 2 3 25 25 H 1.08994 * 109.46975 * 59.99991 * 1 2 3 26 26 H 1.09003 * 109.46921 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47344 * 179.97438 * 3 2 1 28 28 H 1.09004 * 109.46805 * 300.00752 * 3 2 1 29 29 H 1.09000 * 109.46843 * 59.99722 * 3 2 1 30 30 H 1.09004 * 109.47234 * 180.02562 * 4 2 1 31 31 H 1.09000 * 109.47621 * 300.00307 * 4 2 1 32 32 H 0.97003 * 120.00039 * 120.00228 * 6 2 1 33 33 H 1.07997 * 120.04248 * 0.26955 * 10 9 7 34 34 H 1.07992 * 119.83718 * 179.97438 * 11 10 9 35 35 H 1.08000 * 119.79251 * 179.97438 * 12 11 10 36 36 H 1.07996 * 119.96390 * 179.97438 * 13 12 11 37 37 H 0.96997 * 120.00153 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 9 1.5737 -0.0618 -2.3915 6 7 2.0183 -0.6906 1.1962 7 6 1.6928 -0.2302 2.4203 8 8 0.9933 0.7582 2.5319 9 6 2.1840 -0.9260 3.6249 10 6 2.9872 -2.0619 3.5015 11 6 3.4435 -2.7073 4.6307 12 6 3.1088 -2.2349 5.8898 13 6 2.3151 -1.1142 6.0272 14 6 1.8468 -0.4511 4.9009 15 8 1.0677 0.6498 5.0337 16 6 0.6872 0.9832 6.2833 17 1 1.0695 0.4316 7.1295 18 6 -0.1953 2.0347 6.4823 19 7 -0.6604 2.7068 5.4519 20 14 -0.7219 2.4971 8.2138 21 1 -0.0613 1.5938 9.1900 22 1 -0.3277 3.9014 8.4927 23 1 -2.1959 2.3634 8.3351 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 -0.7217 -1.2490 31 1 1.6766 -1.7489 -1.2493 32 1 2.5760 -1.4793 1.1072 33 1 3.2544 -2.4315 2.5225 34 1 4.0641 -3.5857 4.5338 35 1 3.4707 -2.7474 6.7688 36 1 2.0583 -0.7525 7.0118 37 1 -1.2777 3.4418 5.5909 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333303809.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:05 Heat of formation + Delta-G solvation = -86.036919 kcal Electronic energy + Delta-G solvation = -22280.945904 eV Core-core repulsion = 18745.680365 eV Total energy + Delta-G solvation = -3535.265539 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -47.73644 -39.82000 -38.50896 -36.40550 -35.54344 -32.36538 -31.89921 -29.73013 -28.93220 -27.03221 -26.89177 -25.40656 -23.30821 -21.63505 -20.43027 -19.20883 -18.07767 -17.77987 -16.49505 -16.21093 -15.97144 -15.09429 -14.78930 -14.51295 -14.37308 -14.14810 -13.94986 -13.76180 -13.50991 -12.90137 -12.86667 -12.60689 -12.51957 -11.79868 -11.73129 -11.61205 -11.35261 -11.13979 -11.13098 -10.94932 -10.83991 -10.82816 -10.59644 -10.45761 -9.55099 -8.90257 -8.72314 -8.62477 -8.30091 -7.33452 -6.46617 -4.06296 1.68772 2.29217 3.10594 3.11532 3.17235 3.48210 3.71269 3.91866 4.46594 4.58598 4.70450 4.85839 5.04365 5.14109 5.16644 5.39483 5.47244 5.48911 5.56507 5.69948 5.91214 5.97307 6.05821 6.09755 6.14006 6.14288 6.53360 6.63148 6.66893 6.67675 6.90025 6.97015 7.03892 7.21506 7.27316 7.66836 7.89891 8.08606 8.93328 9.07667 9.65140 10.67136 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017279 B = 0.005521 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.040021 B = 5070.541823 C = 6496.350479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.150 3.850 3 C -0.165 4.165 4 C 0.063 3.937 5 F -0.208 7.208 6 N -0.738 5.738 7 C 0.560 3.440 8 O -0.492 6.492 9 C -0.228 4.228 10 C -0.039 4.039 11 C -0.231 4.231 12 C -0.051 4.051 13 C -0.238 4.238 14 C 0.189 3.811 15 O -0.123 6.123 16 C -0.403 4.403 17 H 0.094 0.906 18 C 0.045 3.955 19 N -0.832 5.832 20 Si 0.940 3.060 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.275 1.275 24 H 0.090 0.910 25 H 0.062 0.938 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.391 0.609 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.132 0.868 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.261 -8.479 -7.557 12.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.063 3.937 3 C -0.223 4.223 4 C 0.008 3.992 5 F -0.189 7.189 6 N -0.394 5.394 7 C 0.350 3.650 8 O -0.366 6.366 9 C -0.233 4.233 10 C -0.058 4.058 11 C -0.250 4.250 12 C -0.069 4.069 13 C -0.257 4.257 14 C 0.129 3.871 15 O -0.021 6.021 16 C -0.479 4.479 17 H 0.112 0.888 18 C -0.163 4.163 19 N -0.463 5.463 20 Si 0.765 3.235 21 H -0.190 1.190 22 H -0.200 1.200 23 H -0.200 1.200 24 H 0.109 0.891 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.225 0.775 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.149 0.851 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.429 -7.294 -7.706 11.919 hybrid contribution 0.139 -0.330 0.822 0.896 sum 5.568 -7.624 -6.884 11.684 Atomic orbital electron populations 1.22227 0.93573 1.02235 1.04316 1.20670 0.95529 0.93391 0.84069 1.22225 1.00570 0.95236 1.04298 1.22120 0.99680 0.95767 0.81654 1.92756 1.90791 1.83418 1.51900 1.45867 1.56049 1.32559 1.04941 1.18138 0.80391 0.84320 0.82171 1.90888 1.35459 1.24534 1.85737 1.18840 1.11635 1.01866 0.90923 1.20754 0.94317 0.93003 0.97702 1.20460 1.08513 1.03512 0.92519 1.20899 0.94749 0.94529 0.96769 1.21163 1.05650 0.99843 0.99024 1.19270 0.89594 0.86318 0.91875 1.84170 1.53893 1.33473 1.30576 1.21541 1.27496 1.16974 0.81915 0.88850 1.25378 0.95633 0.95551 0.99727 1.70127 1.27772 1.18449 1.29932 0.85666 0.78805 0.78868 0.80185 1.18981 1.20016 1.20014 0.89127 0.91880 0.92906 0.92911 0.91870 0.89170 0.90422 0.90420 0.77489 0.87118 0.87300 0.87203 0.85081 0.91906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.61 8.28 37.16 0.31 -2.30 16 2 C 0.15 2.16 0.91 -131.82 -0.12 2.04 16 3 C -0.17 -2.59 8.28 37.16 0.31 -2.28 16 4 C 0.06 0.68 6.48 37.16 0.24 0.92 16 5 F -0.21 -2.62 16.32 2.25 0.04 -2.58 16 6 N -0.74 -11.30 5.06 -48.64 -0.25 -11.55 16 7 C 0.56 11.71 7.18 -12.47 -0.09 11.62 16 8 O -0.49 -12.65 11.37 -16.57 -0.19 -12.84 16 9 C -0.23 -4.78 5.89 -104.81 -0.62 -5.40 16 10 C -0.04 -0.64 9.54 -39.20 -0.37 -1.01 16 11 C -0.23 -3.67 10.03 -39.61 -0.40 -4.07 16 12 C -0.05 -0.88 10.03 -39.54 -0.40 -1.28 16 13 C -0.24 -5.01 9.16 -39.44 -0.36 -5.37 16 14 C 0.19 4.59 6.66 -38.60 -0.26 4.34 16 15 O -0.12 -3.55 7.84 -21.08 -0.17 -3.72 16 16 C -0.40 -11.25 9.49 30.90 0.29 -10.96 16 17 H 0.09 2.37 5.21 -52.49 -0.27 2.10 16 18 C 0.04 1.24 5.49 -17.51 -0.10 1.14 16 19 N -0.83 -24.72 13.67 55.48 0.76 -23.96 16 20 Si 0.94 20.34 29.55 -169.99 -5.02 15.31 16 21 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 22 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 23 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 24 H 0.09 1.80 6.16 -51.93 -0.32 1.48 16 25 H 0.06 0.91 7.80 -51.93 -0.41 0.50 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.90 7.80 -51.93 -0.41 0.50 16 29 H 0.09 1.78 6.16 -51.93 -0.32 1.46 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.39 4.61 6.50 -40.82 -0.27 4.35 16 33 H 0.11 1.37 6.40 -52.49 -0.34 1.03 16 34 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.13 2.74 5.64 -52.49 -0.30 2.45 16 37 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 311.21 15.07 4.69 4.69 Total: -1.00 -33.03 311.21 -5.99 -39.02 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -4.29 Total: 8.25 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -1.56 Total: -12.62 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: 0.51 Total: -35.51 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.35 Total: -16.56 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.04 Total: -2.58 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.03 -5.99 -39.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333303809.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.017 kcal (2) G-P(sol) polarization free energy of solvation -33.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds