Wall clock time and date at job start Tue Mar 31 2020 05:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46889 * 2 1 4 4 C 1.50698 * 109.46825 * 119.99889 * 2 1 3 5 5 O 1.34749 * 126.44793 * 300.02023 * 4 2 1 6 6 C 1.33960 * 107.76150 * 179.97438 * 5 4 2 7 7 N 1.30256 * 108.76040 * 359.97438 * 6 5 4 8 8 C 1.34329 * 126.44286 * 119.71448 * 4 2 1 9 9 C 1.50700 * 126.16491 * 359.97438 * 8 4 2 10 10 S 1.81399 * 109.47477 * 90.00155 * 9 8 4 11 11 C 1.81396 * 103.00080 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47109 * 179.97438 * 11 10 9 13 13 C 1.50701 * 115.55130 * 65.33300 * 12 11 10 14 14 H 1.08001 * 119.99972 * 265.65692 * 13 12 11 15 15 C 1.37878 * 120.00005 * 85.65542 * 13 12 11 16 16 N 1.31514 * 119.99682 * 353.69353 * 15 13 12 17 17 Si 1.86795 * 120.00029 * 173.69700 * 15 13 12 18 18 H 1.48505 * 109.47197 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47258 * 120.00036 * 17 15 13 20 20 H 1.48497 * 109.47039 * 239.99927 * 17 15 13 21 21 C 1.53002 * 117.49942 * 279.66607 * 12 11 10 22 22 C 1.53002 * 117.49895 * 211.00512 * 12 11 10 23 23 H 1.09005 * 109.47166 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47126 * 60.00042 * 1 2 3 25 25 H 1.09000 * 109.46866 * 300.00209 * 1 2 3 26 26 H 1.09000 * 109.46866 * 239.99791 * 2 1 3 27 27 H 1.08997 * 109.47064 * 59.99989 * 3 2 1 28 28 H 1.09003 * 109.46694 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47056 * 299.99410 * 3 2 1 30 30 H 1.07998 * 125.62209 * 179.97438 * 6 5 4 31 31 H 1.09003 * 109.47165 * 209.99988 * 9 8 4 32 32 H 1.09001 * 109.46847 * 329.99955 * 9 8 4 33 33 H 1.08997 * 109.47365 * 299.99533 * 11 10 9 34 34 H 1.09005 * 109.47020 * 59.99782 * 11 10 9 35 35 H 0.97004 * 119.99773 * 174.97412 * 16 15 13 36 36 H 1.08999 * 117.49777 * 359.97438 * 21 12 11 37 37 H 1.08997 * 117.50376 * 145.02071 * 21 12 11 38 38 H 1.08998 * 117.49494 * 214.97487 * 22 12 11 39 39 H 1.08997 * 117.49775 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.7878 -0.3653 2.5099 6 6 2.4127 -1.2499 3.2983 7 7 3.0270 -2.1194 2.5477 8 6 2.8032 -1.8101 1.2582 9 6 3.3247 -2.5609 0.0601 10 16 4.9344 -1.8806 -0.4263 11 6 5.3911 -2.8966 -1.8580 12 6 6.7490 -2.4401 -2.3950 13 6 7.9188 -2.6515 -1.4686 14 1 8.2426 -1.8534 -0.8170 15 6 8.5755 -3.8637 -1.4530 16 7 8.1075 -4.8741 -2.1528 17 14 10.1298 -4.0708 -0.4380 18 1 10.4446 -2.7938 0.2516 19 1 9.9233 -5.1408 0.5709 20 1 11.2576 -4.4424 -1.3297 21 6 6.7736 -1.2011 -3.2925 22 6 7.0012 -2.5891 -3.8967 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 2.4080 -1.2433 4.3782 31 1 3.4373 -3.6153 0.3129 32 1 2.6221 -2.4585 -0.7669 33 1 5.4520 -3.9424 -1.5568 34 1 4.6368 -2.7862 -2.6372 35 1 8.6076 -5.7039 -2.2006 36 1 5.8222 -0.7116 -3.5006 37 1 7.6359 -0.5392 -3.2132 38 1 8.0133 -2.8396 -4.2146 39 1 6.1998 -3.0127 -4.5020 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333737378.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:24 Heat of formation + Delta-G solvation = 29.793574 kcal Electronic energy + Delta-G solvation = -19581.605659 eV Core-core repulsion = 16617.576083 eV Total energy + Delta-G solvation = -2964.029576 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.31382 -36.54885 -35.88101 -35.05770 -31.89839 -30.89472 -27.81386 -27.32951 -26.99819 -25.24864 -23.46722 -21.54301 -21.10370 -20.21110 -19.17012 -17.18738 -16.63655 -16.14864 -15.40963 -15.09401 -14.96798 -14.58689 -14.10315 -13.80790 -13.48258 -13.32300 -13.27575 -12.75294 -12.55583 -12.37681 -11.83658 -11.70074 -11.48287 -11.39499 -11.12056 -11.03858 -10.91005 -10.82484 -10.43933 -10.34510 -10.17228 -9.61610 -9.38689 -8.79414 -8.52193 -8.38857 -7.98671 -6.76921 -6.01232 -4.05903 1.41897 2.18529 2.76780 3.11605 3.32980 3.41686 3.46956 3.52401 4.16636 4.46336 4.52832 4.70269 4.88678 4.92950 5.16546 5.28262 5.39856 5.43173 5.45078 5.58298 5.62246 5.70281 5.82076 5.86839 5.97957 6.03684 6.11043 6.16284 6.22549 6.35110 6.41208 6.54341 6.74385 6.82922 7.07739 7.42209 7.50592 7.79620 7.92731 8.42854 8.96155 9.60406 11.08070 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.021272 B = 0.004627 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.980175 B = 6049.503746 C = 6808.647795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.008 4.008 3 C -0.147 4.147 4 C -0.023 4.023 5 O -0.203 6.203 6 C 0.160 3.840 7 N -0.469 5.469 8 C 0.015 3.985 9 C -0.025 4.025 10 S -0.225 6.225 11 C -0.029 4.029 12 C 0.055 3.945 13 C -0.482 4.482 14 H 0.062 0.938 15 C 0.072 3.928 16 N -0.882 5.882 17 Si 0.888 3.112 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.285 1.285 21 C -0.205 4.205 22 C -0.148 4.148 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.059 0.941 26 H 0.105 0.895 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.248 0.752 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.047 0.953 35 H 0.259 0.741 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.321 8.434 4.444 18.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.027 4.027 3 C -0.204 4.204 4 C -0.079 4.079 5 O -0.090 6.090 6 C -0.067 4.067 7 N -0.198 5.198 8 C -0.105 4.105 9 C -0.173 4.173 10 S 0.004 5.996 11 C -0.178 4.178 12 C 0.054 3.946 13 C -0.520 4.520 14 H 0.080 0.920 15 C -0.131 4.131 16 N -0.519 5.519 17 Si 0.715 3.285 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.242 4.242 22 C -0.188 4.188 23 H 0.077 0.923 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.123 0.877 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.264 0.736 31 H 0.111 0.889 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.425 8.552 5.174 17.549 hybrid contribution -0.091 -0.920 -0.095 0.929 sum -14.516 7.632 5.080 17.168 Atomic orbital electron populations 1.21885 0.93754 1.02340 1.02530 1.19767 0.95972 0.96382 0.90582 1.21850 1.02414 0.93974 1.02194 1.23095 1.02888 0.97957 0.83932 1.84377 1.59454 1.48760 1.16387 1.27950 0.93965 0.85952 0.98834 1.70335 1.20765 1.26753 1.01907 1.20634 1.00833 0.96762 0.92243 1.21529 0.99271 1.01899 0.94621 1.87113 1.19980 1.49603 1.42908 1.23134 0.99640 1.01117 0.93886 1.18446 0.91286 0.95133 0.89776 1.20424 1.12334 0.98054 1.21195 0.91968 1.24931 0.97329 0.95380 0.95433 1.70020 1.37233 1.03182 1.41489 0.86597 0.83328 0.78298 0.80240 1.19610 1.21003 1.21090 1.23019 1.00334 0.91680 1.09205 1.22574 1.00716 0.97746 0.97750 0.92348 0.91452 0.92228 0.87674 0.92438 0.91421 0.91528 0.73608 0.88924 0.89647 0.89761 0.93431 0.93168 0.91434 0.90310 0.89807 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.18 37.16 0.34 -0.95 16 2 C -0.01 -0.09 3.27 -91.77 -0.30 -0.39 16 3 C -0.15 -1.51 9.18 37.16 0.34 -1.17 16 4 C -0.02 -0.31 5.89 -35.69 -0.21 -0.52 16 5 O -0.20 -2.62 10.77 5.39 0.06 -2.56 16 6 C 0.16 1.95 13.23 52.09 0.69 2.64 16 7 N -0.47 -7.66 11.29 -11.18 -0.13 -7.79 16 8 C 0.02 0.25 6.37 -82.81 -0.53 -0.28 16 9 C -0.03 -0.42 6.12 36.01 0.22 -0.20 16 10 S -0.23 -4.64 21.41 -107.50 -2.30 -6.94 16 11 C -0.03 -0.66 5.80 37.16 0.22 -0.44 16 12 C 0.06 1.35 1.34 -155.66 -0.21 1.14 16 13 C -0.48 -13.25 8.49 -34.44 -0.29 -13.54 16 14 H 0.06 1.77 7.82 -52.49 -0.41 1.36 16 15 C 0.07 1.99 5.39 -17.82 -0.10 1.89 16 16 N -0.88 -24.91 12.90 55.43 0.71 -24.20 16 17 Si 0.89 21.61 29.55 -169.99 -5.02 16.59 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 C -0.20 -4.46 9.96 -26.69 -0.27 -4.72 16 22 C -0.15 -3.41 9.40 -26.69 -0.25 -3.66 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.11 1.17 6.82 -51.93 -0.35 0.82 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.25 1.67 8.06 -52.49 -0.42 1.25 16 31 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 32 H 0.09 1.21 7.16 -51.92 -0.37 0.84 16 33 H 0.08 2.07 8.14 -51.93 -0.42 1.64 16 34 H 0.05 0.95 8.09 -51.92 -0.42 0.53 16 35 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 36 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 37 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16 38 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16 39 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 344.83 15.07 5.20 5.20 Total: -1.00 -31.11 344.83 -8.01 -39.12 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -6.19 Total: 0.78 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: -0.34 Total: -20.20 kcal Atomic # 7 Polarization: -32.57 SS G_CDS: 0.59 Total: -31.98 kcal Atomic # 8 Polarization: -2.62 SS G_CDS: 0.06 Total: -2.56 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -4.64 SS G_CDS: -2.30 Total: -6.94 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.11 -8.01 -39.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333737378.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.913 kcal (2) G-P(sol) polarization free energy of solvation -31.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds