Wall clock time and date at job start Tue Mar 31 2020 05:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46889 * 2 1 4 4 C 1.50698 * 109.46825 * 119.99889 * 2 1 3 5 5 O 1.34749 * 126.44793 * 300.02023 * 4 2 1 6 6 C 1.33960 * 107.76150 * 179.97438 * 5 4 2 7 7 N 1.30256 * 108.76040 * 359.97438 * 6 5 4 8 8 C 1.34329 * 126.44286 * 119.71448 * 4 2 1 9 9 C 1.50700 * 126.16491 * 359.97438 * 8 4 2 10 10 S 1.81399 * 109.47477 * 90.00155 * 9 8 4 11 11 C 1.81396 * 103.00080 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47109 * 179.97438 * 11 10 9 13 13 C 1.50701 * 115.55130 * 65.33300 * 12 11 10 14 14 H 1.08001 * 119.99972 * 265.65692 * 13 12 11 15 15 C 1.37878 * 120.00005 * 85.65542 * 13 12 11 16 16 N 1.31514 * 119.99682 * 353.69353 * 15 13 12 17 17 Si 1.86795 * 120.00029 * 173.69700 * 15 13 12 18 18 H 1.48505 * 109.47197 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47258 * 120.00036 * 17 15 13 20 20 H 1.48497 * 109.47039 * 239.99927 * 17 15 13 21 21 C 1.53002 * 117.49942 * 279.66607 * 12 11 10 22 22 C 1.53002 * 117.49895 * 211.00512 * 12 11 10 23 23 H 1.09005 * 109.47166 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47126 * 60.00042 * 1 2 3 25 25 H 1.09000 * 109.46866 * 300.00209 * 1 2 3 26 26 H 1.09000 * 109.46866 * 239.99791 * 2 1 3 27 27 H 1.08997 * 109.47064 * 59.99989 * 3 2 1 28 28 H 1.09003 * 109.46694 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47056 * 299.99410 * 3 2 1 30 30 H 1.07998 * 125.62209 * 179.97438 * 6 5 4 31 31 H 1.09003 * 109.47165 * 209.99988 * 9 8 4 32 32 H 1.09001 * 109.46847 * 329.99955 * 9 8 4 33 33 H 1.08997 * 109.47365 * 299.99533 * 11 10 9 34 34 H 1.09005 * 109.47020 * 59.99782 * 11 10 9 35 35 H 0.97004 * 119.99773 * 174.97412 * 16 15 13 36 36 H 1.08999 * 117.49777 * 359.97438 * 21 12 11 37 37 H 1.08997 * 117.50376 * 145.02071 * 21 12 11 38 38 H 1.08998 * 117.49494 * 214.97487 * 22 12 11 39 39 H 1.08997 * 117.49775 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.7878 -0.3653 2.5099 6 6 2.4127 -1.2499 3.2983 7 7 3.0270 -2.1194 2.5477 8 6 2.8032 -1.8101 1.2582 9 6 3.3247 -2.5609 0.0601 10 16 4.9344 -1.8806 -0.4263 11 6 5.3911 -2.8966 -1.8580 12 6 6.7490 -2.4401 -2.3950 13 6 7.9188 -2.6515 -1.4686 14 1 8.2426 -1.8534 -0.8170 15 6 8.5755 -3.8637 -1.4530 16 7 8.1075 -4.8741 -2.1528 17 14 10.1298 -4.0708 -0.4380 18 1 10.4446 -2.7938 0.2516 19 1 9.9233 -5.1408 0.5709 20 1 11.2576 -4.4424 -1.3297 21 6 6.7736 -1.2011 -3.2925 22 6 7.0012 -2.5891 -3.8967 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 2.4080 -1.2433 4.3782 31 1 3.4373 -3.6153 0.3129 32 1 2.6221 -2.4585 -0.7669 33 1 5.4520 -3.9424 -1.5568 34 1 4.6368 -2.7862 -2.6372 35 1 8.6076 -5.7039 -2.2006 36 1 5.8222 -0.7116 -3.5006 37 1 7.6359 -0.5392 -3.2132 38 1 8.0133 -2.8396 -4.2146 39 1 6.1998 -3.0127 -4.5020 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333737378.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:23 Heat of formation + Delta-G solvation = 11.503074 kcal Electronic energy + Delta-G solvation = -19582.398795 eV Core-core repulsion = 16617.576083 eV Total energy + Delta-G solvation = -2964.822711 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.35973 -38.40532 -36.74382 -36.14720 -33.99109 -32.03030 -29.49337 -28.26349 -28.05528 -27.30562 -24.39844 -22.90943 -22.65467 -21.26812 -20.96417 -18.39019 -17.91771 -17.70602 -16.73996 -16.58788 -16.35530 -15.91738 -15.67820 -15.06004 -15.01222 -14.81826 -14.14353 -14.08319 -14.04706 -13.54007 -13.18744 -13.05219 -13.00387 -12.82284 -12.58251 -12.39879 -12.21963 -12.16660 -11.96353 -11.91822 -11.52708 -11.39604 -10.99359 -10.71229 -10.45966 -9.84980 -9.59184 -8.40603 -8.11513 -6.20651 0.28450 0.89459 1.37344 1.41244 1.51374 1.77796 1.83581 2.04076 2.43408 3.17626 3.20716 3.55426 3.58809 3.68162 3.92755 4.14309 4.21366 4.25930 4.36970 4.43067 4.46494 4.62559 4.69990 4.73781 4.77704 4.87759 4.93478 4.96098 4.99877 5.02306 5.14447 5.25107 5.32818 5.34040 5.35497 5.61132 5.64927 5.78261 6.39448 6.74939 6.83393 7.47236 8.96975 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.021272 B = 0.004627 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.980175 B = 6049.503746 C = 6808.647795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.012 4.012 3 C -0.143 4.143 4 C -0.009 4.009 5 O -0.202 6.202 6 C 0.179 3.821 7 N -0.520 5.520 8 C -0.022 4.022 9 C -0.006 4.006 10 S -0.259 6.259 11 C -0.017 4.017 12 C 0.024 3.976 13 C -0.494 4.494 14 H 0.043 0.957 15 C 0.030 3.970 16 N -0.905 5.905 17 Si 0.940 3.060 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.276 1.276 21 C -0.180 4.180 22 C -0.148 4.148 23 H 0.056 0.944 24 H 0.087 0.913 25 H 0.061 0.939 26 H 0.103 0.897 27 H 0.061 0.939 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.296 0.704 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.259 0.741 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.020 9.805 4.798 20.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.031 4.031 3 C -0.200 4.200 4 C -0.066 4.066 5 O -0.088 6.088 6 C -0.048 4.048 7 N -0.248 5.248 8 C -0.141 4.141 9 C -0.154 4.154 10 S -0.030 6.030 11 C -0.165 4.165 12 C 0.023 3.977 13 C -0.532 4.532 14 H 0.061 0.939 15 C -0.170 4.170 16 N -0.543 5.543 17 Si 0.766 3.234 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.202 1.202 21 C -0.218 4.218 22 C -0.188 4.188 23 H 0.075 0.925 24 H 0.106 0.894 25 H 0.080 0.920 26 H 0.121 0.879 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.107 0.893 30 H 0.310 0.690 31 H 0.096 0.904 32 H 0.129 0.871 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.113 0.887 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.107 9.922 5.509 19.704 hybrid contribution 0.363 -1.290 -0.100 1.344 sum -15.745 8.632 5.409 18.753 Atomic orbital electron populations 1.21851 0.91696 1.02618 1.03695 1.19953 0.97615 0.96385 0.89142 1.21826 1.00912 0.93741 1.03558 1.23527 1.01308 0.96849 0.84939 1.84416 1.59447 1.48803 1.16180 1.28999 0.91465 0.84066 1.00241 1.70285 1.23006 1.28953 1.02569 1.20607 1.02941 0.98422 0.92083 1.21451 0.97081 1.00784 0.96125 1.87098 1.23608 1.49520 1.42733 1.22830 0.99324 0.99236 0.95126 1.18545 0.91478 0.97711 0.89993 1.20584 1.13585 0.97550 1.21439 0.93860 1.25528 0.99757 0.95267 0.96476 1.70093 1.38125 1.03412 1.42715 0.85782 0.80687 0.77887 0.79012 1.19719 1.21078 1.20170 1.23003 1.01469 0.90780 1.06524 1.22502 1.00089 0.99046 0.97175 0.92524 0.89379 0.91992 0.87912 0.91972 0.93675 0.89323 0.68955 0.90374 0.87052 0.93013 0.91068 0.93172 0.88685 0.90666 0.92018 0.90161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.18 71.98 0.66 -1.40 16 2 C -0.01 -0.24 3.27 -11.54 -0.04 -0.28 16 3 C -0.14 -2.62 9.18 71.98 0.66 -1.96 16 4 C -0.01 -0.24 5.89 24.79 0.15 -0.10 16 5 O -0.20 -4.75 10.77 -3.63 -0.04 -4.79 16 6 C 0.18 3.99 13.23 130.48 1.73 5.72 16 7 N -0.52 -16.59 11.29 -304.08 -3.43 -20.03 16 8 C -0.02 -0.68 6.37 41.26 0.26 -0.42 16 9 C -0.01 -0.22 6.12 71.24 0.44 0.22 16 10 S -0.26 -10.71 21.41 -56.49 -1.21 -11.92 16 11 C -0.02 -0.75 5.80 71.98 0.42 -0.33 16 12 C 0.02 1.19 1.34 -52.93 -0.07 1.12 16 13 C -0.49 -27.62 8.49 25.60 0.22 -27.40 16 14 H 0.04 2.52 7.82 -2.91 -0.02 2.50 16 15 C 0.03 1.67 5.39 84.65 0.46 2.13 16 16 N -0.91 -51.99 12.90 21.45 0.28 -51.71 16 17 Si 0.94 45.01 29.55 68.60 2.03 47.03 16 18 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 19 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 21 C -0.18 -7.64 9.96 30.62 0.30 -7.34 16 22 C -0.15 -6.79 9.40 30.62 0.29 -6.50 16 23 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 24 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.10 2.08 6.82 -2.39 -0.02 2.07 16 27 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.09 1.22 8.14 -2.39 -0.02 1.21 16 30 H 0.30 2.96 8.06 -2.91 -0.02 2.94 16 31 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 32 H 0.11 3.03 7.16 -2.39 -0.02 3.02 16 33 H 0.05 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.07 2.77 8.09 -2.39 -0.02 2.75 16 35 H 0.26 14.24 8.32 -92.71 -0.77 13.47 16 36 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 37 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 38 H 0.06 3.06 8.14 -2.39 -0.02 3.04 16 39 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -68.24 344.83 4.10 -64.14 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 1.02 Total: 13.82 kcal Atomic # 6 Polarization: -42.01 SS G_CDS: 5.47 Total: -36.55 kcal Atomic # 7 Polarization: -68.58 SS G_CDS: -3.16 Total: -71.74 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.04 Total: -4.79 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: -10.71 SS G_CDS: -1.21 Total: -11.92 kcal Total: -68.24 4.10 -64.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333737378.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.642 kcal (2) G-P(sol) polarization free energy of solvation -68.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds